View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2710-Insertion-1 (Length: 966)
Name: NF2710-Insertion-1
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710-Insertion-1 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 539; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 360 - 966
Target Start/End: Complemental strand, 29219986 - 29219379
Alignment:
| Q |
360 |
tatggatgcacatgtaatttaatcctatatttattttcattaagtatatatatttttccacctctnnnnnnngtatatatatttttcctataaatttcaa |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29219986 |
tatggatgcacatgtaatttaatcctatatttattttcattaagtatatatatttttccacctctaaaaaaagtatatatatttttcctataaatttcaa |
29219887 |
T |
|
| Q |
460 |
gatgggagctaaatttaacttcaacaaaaattgaacggtgaaatttcttaatcgactggattatgcacatactattatatgattgtactcatcgacaaat |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29219886 |
gatgggagctaaatttaacttcaacaaaaattgaacggtgaaatttcttaatcgactgcattatgcacatactattatatgattgtacttatcgacaaat |
29219787 |
T |
|
| Q |
560 |
ataggaaagccaaccctcaacgcctccttaactagcccnnnnnnnngtaatggagacaaattctacacaggaatcatcggctagcaagcatttctaaatc |
659 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29219786 |
ataggaaagccaaccctcaacgcctccttaactagcccaaaaaaaagtaatggagacaaattctacacaggaatcatcggctagcaagcatttctaaatc |
29219687 |
T |
|
| Q |
660 |
taacatatccccaaatattaacaagcaatactagcgagaccattacaatggcagaatatgcaagaacagtagaccgcatagcgctgatcgaggatgtctt |
759 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29219686 |
taacatatccccaaatattaacaagcaatactagcgagaccattacaatggcagaatatgcaagaacagtagaccgcatagcgctgatcgaggatgtctt |
29219587 |
T |
|
| Q |
760 |
tgaagtgcaccgaaccctgcccaacagaaagtttttcgaccccaagttggattctgcagttgtaacatgttgctcacagatctctcttgctgacatggga |
859 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29219586 |
tgaagtgcaccgaaccctgcccaacagaaagtttttcgaccccgagttggattctgcagttgtaacatgttgctcacagatctctcttgctgacatggga |
29219487 |
T |
|
| Q |
860 |
gatgtcttctctaggacggaagcactctcagcagcagcatggttttcagaagcttccgtctcctgc-aactctcatcttttgtagtctcctcggaaacaa |
958 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29219486 |
gatgtcttctctaggacggaagcactctcagcagcagcatggttttctgaagcttccgtctcctgcaaactctcatcttttgtagtctcctcggaaacaa |
29219387 |
T |
|
| Q |
959 |
gggaatgc |
966 |
Q |
| |
|
|||||||| |
|
|
| T |
29219386 |
gggaatgc |
29219379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 29220337 - 29220189
Alignment:
| Q |
8 |
agattgtgagtacccttgaacaatgaattccaccatcattgtacgcatttgagtcctcattgtacgtgcttaagttcacttttctctctttgattagtaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29220337 |
agattgtgagtacccttgaacaatgaattccaccatcattgtatgcatttgagtcctcattgtacgtgcttaagttcacttttctctctttgcttagtaa |
29220238 |
T |
|
| Q |
108 |
ttgaacttgggtatggtcatatcctgcattatcggaaaacaaaaacgtt |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29220237 |
ttgaacttgggtatggtcatatcctgcattatcggaaaacaaaaacgtt |
29220189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 29220122 - 29220041
Alignment:
| Q |
225 |
caatcaggac-aaagtgatacgatggaaatattataatgagtatgaaaaattgtggtttgtgataaaaatatgaaagtgtac |
305 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29220122 |
caatcaggacgaaagtgatacgatggaaatattataatgagtatgaaaaattgtggtttgtgataaaaatatgaaagtgtac |
29220041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 897 - 965
Target Start/End: Original strand, 32623774 - 32623843
Alignment:
| Q |
897 |
catggttttcagaagcttccgtctcctgcaa-ctctcatcttttgtagtctcctcggaaacaagggaatg |
965 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32623774 |
catggttttctgaagctttcgtctcctgcaaactctcatcttttgtagtctcctcttaaacaagggaatg |
32623843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University