View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710-Insertion-10 (Length: 327)
Name: NF2710-Insertion-10
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 32158259 - 32158489
Alignment:
| Q |
8 |
gacaataatcttaccaataagaccaatcgtttttggcaaaatattatgtcccagtggggtataagtcacattcttaacagacccaaaattcatcacctaa |
107 |
Q |
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| T |
32158259 |
gacaataatcttaccaataagaacaatcgtttttggtaaaatattatgtcccggtggggtataagtcacattcttaacagaaccaaaattcgtcacctaa |
32158358 |
T |
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| Q |
108 |
atcattaatacaattaaatctatctaaactagattcatgtatatcaaattcttctaaatcattattatggtttgaatgaaaaccaaacaagaatcataat |
207 |
Q |
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| T |
32158359 |
atcattaatacaattaaatctatctaaactagattcatgtatatcaaattcttctaaatcattattatggtttgaatgaaaatcaaacaagaatcataat |
32158458 |
T |
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| Q |
208 |
tttgtaagaaataaaatcgaacatgaatcat |
238 |
Q |
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| T |
32158459 |
tttgtaagaaataaaatcgaacatgaatcat |
32158489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 220 - 327
Target Start/End: Original strand, 32158437 - 32158544
Alignment:
| Q |
220 |
aaaatcgaacatgaatcatgattttgtaagaaataaaatcgaacatgaatcatagtttcatagagaaatacataccttattgtatccattctcaacaatt |
319 |
Q |
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| T |
32158437 |
aaaatcaaacaagaatcataattttgtaagaaataaaatcgaacatgaatcatagtttcatagagaaatacataccttattgtatccattatcaacaatt |
32158536 |
T |
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| Q |
320 |
tcttcatc |
327 |
Q |
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| T |
32158537 |
tcttcatc |
32158544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 2821158 - 2821004
Alignment:
| Q |
21 |
ccaataagaccaatcgtttttggcaaaatattatgtcccagtg--gggtataagtcacattcttaaca---gacccaaaattcatcacctaaatcattaa |
115 |
Q |
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| T |
2821158 |
ccaataagaccaatcgtttttggcaaaatattatgcccccgtgtggggtataagtctcattcttaacaacagaaccaaaattcgtcagctaaatcatcca |
2821059 |
T |
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| Q |
116 |
tacaattaaatctatctaaactagattcatgtatatcaaattcttctaaatcatt |
170 |
Q |
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| T |
2821058 |
tacaattatatatatctaaactagattcatgtatatcaaattattctaaatcatt |
2821004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 215 - 304
Target Start/End: Complemental strand, 2820969 - 2820880
Alignment:
| Q |
215 |
gaaataaaatcgaacatgaatcatgattttgtaagaaataaaatcgaacatgaatcatagtttcatagagaaatacataccttattgtat |
304 |
Q |
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| T |
2820969 |
gaaagaaaatcaaacaagattcgtaattttgtaagagagaaaatcaaacatgaatcatagtttcatagagaaatacataccttattgtat |
2820880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 32211790 - 32211749
Alignment:
| Q |
285 |
aaatacataccttattgtatccattctcaacaatttcttcat |
326 |
Q |
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| T |
32211790 |
aaatacataccttattgtatccattatcaacaacttcttcat |
32211749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 2820975 - 2820912
Alignment:
| Q |
175 |
tggtttgaatgaaaaccaaacaagaatcataattttgtaagaaataaaatcgaacatgaatcat |
238 |
Q |
| |
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|||| |||| ||||| ||||||||| || ||||||||||||| | |||||| |||||||||||| |
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| T |
2820975 |
tggtatgaaagaaaatcaaacaagattcgtaattttgtaagagagaaaatcaaacatgaatcat |
2820912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 32110990 - 32111039
Alignment:
| Q |
120 |
attaaatctatctaaactagattcatgtatatcaaattcttctaaatcatt |
170 |
Q |
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| T |
32110990 |
attaaatatatctaa-ctagattcatgtatgtcaaattcttccaaatcatt |
32111039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 32534304 - 32534340
Alignment:
| Q |
290 |
cataccttattgtatccattctcaacaatttcttcat |
326 |
Q |
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| T |
32534304 |
cataccttattgtatccattatcaacaacttcttcat |
32534340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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