View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710-Insertion-2 (Length: 893)
Name: NF2710-Insertion-2
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710-Insertion-2 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 810; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 810; E-Value: 0
Query Start/End: Original strand, 7 - 893
Target Start/End: Original strand, 35242421 - 35243304
Alignment:
| Q |
7 |
accaaaataatcatggatctatggtgttaaccacagagacaatgctnnnnnnncattgctctgaaacagcaaactaaacggcttaaatttg-ctccattt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
35242421 |
accaaaataatcatggatctatggtgttaaccacagagacaatgctaaaaaaacattgctctgaaacagcaaactaaacggcttaagtttgactccattt |
35242520 |
T |
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| Q |
106 |
tcgacagtgcaaacaataaagattttgttgtatatcattccattcaccatatgtgtaacactcaatgggaccaaaggtaagtaactggccacttgctgaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35242521 |
tcgacagtgcaaacaataaagattttgttgtatatcattccattcaccatatgtgtaacactcaatgggaccaaaggtaggtaactggccacttgctgaa |
35242620 |
T |
|
| Q |
206 |
attaaagagtgtcagtcagctcctcttcacaatctttaatagagatgaatatgttccaagggaagcacatactattccaaatgcagcaattaccacactg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35242621 |
attaaagagtgtcagtcagctcctcttcacaatctttaatagagatgaatatgttccaagggaagcacatactattccaaatgcagcaattaccacactg |
35242720 |
T |
|
| Q |
306 |
agaataacctgcagatgatatatagcattatagaaagtaaagtagggagagaaaaattggaaggatagggaaacatgagtaaaatatggatttgtattat |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35242721 |
agaataacctgcagatgatatatagcattatagaaagtaaagtagggagagaaaaattggaaggataggaaaacatgagtaaaatatggatttgtattat |
35242820 |
T |
|
| Q |
406 |
gtaactaaacaatcatataatctaagttatttggtaaagattgaacaattcatatttcatctttgtccaaaatatgaagttgaaacacgagctgtccagt |
505 |
Q |
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| T |
35242821 |
gtaactaaacaatcatataatctaagttatttgataaagatcgaacaattcatatttcatctttgtccaaaatatgaagttgaaacacgagctgtccagt |
35242920 |
T |
|
| Q |
506 |
cttgatctaacagttgactacgtaattacgtgaaaacaaatccttattggagtctcaaaatttgaaaactaggcattgaaattagttttatacaaaaaag |
605 |
Q |
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| T |
35242921 |
cttgatctaacagttgactacgtaattacgtgaaaacaaatccttattggagtctcaaaatttgaaaactaggcattgaaattagttttatacaaaaaag |
35243020 |
T |
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| Q |
606 |
taaataaagaatacataagtgtgtttaaatggttttgctcggacgccaattctgtgcggtaaaacaaaacaagtagttgcacattcaaaaagtaagttga |
705 |
Q |
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| T |
35243021 |
taaataaagaatacataagtgtgtt----tggttttgctcggacgccaattctgtgcggtaaaacaaaacaagtagttgcacattcaaaaaataagttga |
35243116 |
T |
|
| Q |
706 |
atggcacagggaaatgtaatacacaacataaatatatgttgtcatagactctatgttactgtgaaactaacatgaacagttgattattcataattatggc |
805 |
Q |
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| T |
35243117 |
atggcacagggaaatgtaatacacaacataaatatatgttgttatagattctatgttactgtgaaactaacatgaacagttgattattcataattatggc |
35243216 |
T |
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| Q |
806 |
tccgtactaacatgtattcaactgttatttttatgtaccctctcaaggactctcttctaaaattaataatcaaagctactacactgaa |
893 |
Q |
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| T |
35243217 |
tccgtactaacatgtattcaactgttatttttatgtaccctctcaaggactctcttctaaaattaataatcaaagctactacactgaa |
35243304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 35226556 - 35226698
Alignment:
| Q |
177 |
caaaggtaagtaactggccacttgctgaaattaaagagtgtcagtcagctcctcttcacaatctttaatagagatgaatatgttccaagggaagcacata |
276 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35226556 |
caaagataagtaactggccacttgctgaaattaaagagtgtcagtcagcttatctgcaaaatctttaatagagatgaatatgttccaagggaagcacata |
35226655 |
T |
|
| Q |
277 |
ctattccaaatgcagcaattaccacactgagaataacctgcag |
319 |
Q |
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||| ||| |||||||||||||||||||||||| ||||||||| |
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| T |
35226656 |
ctactccccatgcagcaattaccacactgagaacaacctgcag |
35226698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 466 - 677
Target Start/End: Original strand, 35226840 - 35227054
Alignment:
| Q |
466 |
ctttgtccaaaatatgaagttgaaacacgagctgtccagtcttgatctaacagttgactacgtaattac-gtgaaaacaaatccttat--tggagtctca |
562 |
Q |
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||||||||||||||| ||||||||||| |||| ||||| ||||||||||| ||| ||| |||||||| | |||||| ||||||||||| | |||||||| |
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| T |
35226840 |
ctttgtccaaaatataaagttgaaacatgagccgtccaatcttgatctaagagtcgaccacgtaatttccgtgaaaccaaatccttatattagagtctca |
35226939 |
T |
|
| Q |
563 |
aaatttgaaaactaggcattgaaattagttttatacaaaaaagtaaataaagaatacataagtgtgtttaaatggttttgctcggacgccaattctgtgc |
662 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| ||| ||||||| || |
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| T |
35226940 |
aacattgaaaactaggcattgaaattagttttaaacaaaaaagaaaataaagaatacataagtgtgtttaaatgatttttctcagaccgcaattctctgt |
35227039 |
T |
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| Q |
663 |
ggtaaaacaaaacaa |
677 |
Q |
| |
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||| || |||||||| |
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| T |
35227040 |
ggttaagcaaaacaa |
35227054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 35226423 - 35226538
Alignment:
| Q |
60 |
cattgctctgaaacagcaaactaaacggcttaaatttg-ctccattttcgac-agtgcaaacaataaa-gattttgttgtatatcattccattcaccata |
156 |
Q |
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||||||||| |||||||||||||||||||| || |||| |||||||||| | |||||| ||||||| |||||| | |||||| ||||||||||| |
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| T |
35226423 |
cattgctctcaaacagcaaactaaacggctcaagtttgactccattttcaatgagtgcagtcaataaacgattttact----atcattgcattcaccata |
35226518 |
T |
|
| Q |
157 |
tgtgtaacactcaatgggac |
176 |
Q |
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|||||| ||||||||||||| |
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| T |
35226519 |
tgtgtagcactcaatgggac |
35226538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 829 - 879
Target Start/End: Original strand, 35227387 - 35227436
Alignment:
| Q |
829 |
gttatttttatgtaccctctcaaggactctcttctaaaattaataatcaaa |
879 |
Q |
| |
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||||||||||| |||||||| |||||| ||||||| ||||||||||||||| |
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| T |
35227387 |
gttatttttat-taccctctaaaggaccctcttctgaaattaataatcaaa |
35227436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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