View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710-Insertion-3 (Length: 743)
Name: NF2710-Insertion-3
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 8 - 743
Target Start/End: Complemental strand, 36747009 - 36746267
Alignment:
| Q |
8 |
attcaaccatcacagtcgagattaacctgtcaatgtctttatttcatgtagtttgtgctacatacattgtgttgctcatgtatattttaccttactttca |
107 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| |
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| T |
36747009 |
attcaaccatcgcagtcgagattaacctgtcaatttctttatttcatgtagtttgtgctacatacattgtgttgctcatatctatt--accttactttca |
36746912 |
T |
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| Q |
108 |
ttaattgagaatgcatcttgattaataatgcttagtttttgtttgtgttgaagttggttttgaagnnnnnnnnn-agtttgttgttagtcccacattact |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| || |
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| T |
36746911 |
ttaattgagaatgcatcttgattaataatgcttagtttttgtttatgttgaagttggttttgaagttttttttttagtttgttgttagttccacattgct |
36746812 |
T |
|
| Q |
207 |
cagattctcaggctgttgaatgtataaata--------tgtttgaatacgtttatctacattttatgtaattgcattacatctcttcaatttactgtgtt |
298 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746811 |
cagattctcaggctgtcgaatgtataaataattaaatatgtttgaatacgtttatctacattttatgtaattgcattacatctcttcaatttactgtgtt |
36746712 |
T |
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| Q |
299 |
gaaattctatgtacatttgggtgcaatagagatgatcttgattttaatgattgcatggtgataattgataagatgcaaaattaagaggaaatacttaact |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746711 |
gaaattctatgtacatttgggtgcaatagagatgatcttgattttaatgattgcatggtgataattgataagatgcaaaattaagaggaaatacttaact |
36746612 |
T |
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| Q |
399 |
atgataaatcacatttatttgatcataaacaggacattcatgcataaataaaccaatgttcatctatgcatgtgttatttgaggttacagcaaaagaaaa |
498 |
Q |
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| T |
36746611 |
atgataaatcacacttatttgatcataaacaggacattcatgcataaataaaccaatgttcatctatgcatgtgttatttgaggttacagaaaaagaaaa |
36746512 |
T |
|
| Q |
499 |
ccagactctagaacaccaaaatacaacatttgattaacaaacaaacatacttgtacatagacaagatcagtctcatctatgtattttattgaaagttgca |
598 |
Q |
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| T |
36746511 |
ccagactctagaacaccaaaatacaacatttgattaacaaacaaacatatatgtacatagacaagatcagtctcatctatgtattttattgaaagttgca |
36746412 |
T |
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| Q |
599 |
gcaacaatacttgtagggtagcttaaagagatccttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaa |
698 |
Q |
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| T |
36746411 |
gcaacaatacttgtagggtagcttaaagagatccttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaa |
36746312 |
T |
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| Q |
699 |
agtgtagggcatcttaaccgggccagttcggttaagcaaatctgg |
743 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746311 |
agtgtagggcatcttaaccgggccagttcggttaagcaaatctgg |
36746267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 552 - 595
Target Start/End: Complemental strand, 29014439 - 29014396
Alignment:
| Q |
552 |
tacatagacaagatcagtctcatctatgtattttattgaaagtt |
595 |
Q |
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| T |
29014439 |
tacatagacaacatcagtctcatctatgtattttattgaaagtt |
29014396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 11784993 - 11785054
Alignment:
| Q |
182 |
agtttgttgttagtcccacattactcagattctcaggctgttgaatgtataaatatgtttga |
243 |
Q |
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| T |
11784993 |
agtttgttgttagtcccacattactcaggttctcggactgttgagtgtataaatatgtttga |
11785054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 53089882 - 53089821
Alignment:
| Q |
182 |
agtttgttgttagtcccacattactcagattctcaggctgttgaatgtataaatatgtttga |
243 |
Q |
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| T |
53089882 |
agtttgttgttagtcccactttactcaggttcccagactgttaagtgtataaatatgtttga |
53089821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 35536884 - 35536826
Alignment:
| Q |
182 |
agtttgttgttagtcccacattactcagattctcaggctgttgaatgtataaatatgtt |
240 |
Q |
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| T |
35536884 |
agtttgttgttagttccacattacttaggttctcaaactgttgaatgtataaatatgtt |
35536826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 49292974 - 49293039
Alignment:
| Q |
182 |
agtttgttgttagtcccacattactcagattctcaggctgttgaatgtataaatatgtttgaatac |
247 |
Q |
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| T |
49292974 |
agtttgtttctagtcccacattgctcagattcccaaactattgagtgtataaatatttttgaatac |
49293039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 27134292 - 27134353
Alignment:
| Q |
182 |
agtttgttgttagtcccacattactcagattctcaggctgttgaatgtataaatatgtttga |
243 |
Q |
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| T |
27134292 |
agtttgttgttagtctcacattgcttagattctcgagttgttgagtgtataaatatgtttga |
27134353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 713
Target Start/End: Original strand, 6361701 - 6361781
Alignment:
| Q |
633 |
ttagatagaaacactattgggaattcctctgcaagtcaagccttctccactggtaggtaaaagcaaagtgtagggcatctt |
713 |
Q |
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| T |
6361701 |
ttagatagagacactgttgggaatgcctctgcaagtcaatccttcctcactagaaggataaagcagagtgtaaggcatctt |
6361781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 42042267 - 42042328
Alignment:
| Q |
182 |
agtttgttgttagtcccacattactcagattctcaggctgttgaatgtataaatatgtttga |
243 |
Q |
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| T |
42042267 |
agtttgttgttagtcacacattgcaaaggttcccagactgttgagtgtataaatatgtttga |
42042328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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