View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2710-Insertion-4 (Length: 707)
Name: NF2710-Insertion-4
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710-Insertion-4 |
 | |
|
| [»] scaffold0060 (2 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-129; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 8 - 430
Target Start/End: Complemental strand, 21205649 - 21205245
Alignment:
| Q |
8 |
ttcattgctgcatttatgaacaaagtgtggggat--ccaccactgctgtagaactcattggatgataaatggctgaaacttaactgaaacaa------ct |
99 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |
|
|
| T |
21205649 |
ttcattgctgcatttatgaacaaagtttggggatatccaccactgctgtagaactcattggatgataaatggctgaaacttaattgaaccaagaccaact |
21205550 |
T |
|
| Q |
100 |
tattgaaaatgtagtgtttacagttccagtttcattcactcagttccagtttcattcactcggttgcagtataataccaatcaaggtacaaaaattagag |
199 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||| | |
|
|
| T |
21205549 |
tatagaaaatgtagtgtttacagtt--------------------ccagtttcattcactcggttgcagtttaataccaatcaagacacaaaaatc---g |
21205473 |
T |
|
| Q |
200 |
tgtacaatattgtaccatttccctctctaaatttgtgacttttcggtgagattacggtgtcaattgttttcactccagagttgnnnnnnnctcagtttct |
299 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21205472 |
tgtacaat---gtaccatttccctctctaaatttgtgacttttcggtgaaattacggtgtcaattgttttcactccagagttatttttttctcagtttct |
21205376 |
T |
|
| Q |
300 |
ctttctcttttcacaaaatttaagaagttgaaagttctaaagaatagaatatagaaattgtcagcatcaagacatataaataaaacaaccagaaacatga |
399 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21205375 |
ctttctcttttcacaaaatttaacaagttcaaagttctaaagaatagaatatagaaattgtcagcatcaagacatataaataaaacaaccagaaacatga |
21205276 |
T |
|
| Q |
400 |
gcaaaggaagaagtaaaaccttggagtttgg |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
21205275 |
gcaaaggaagaagtaaaaccttggagtttgg |
21205245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 157 - 422
Target Start/End: Complemental strand, 21189459 - 21189196
Alignment:
| Q |
157 |
actcggttgcagtataataccaatcaaggtacaaaaattagagtgtacaatattgtaccatttccctctctaaatttgtgacttttcggtgagattacgg |
256 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
21189459 |
actcggttgcagtataataccaatcaagatacaaaaattagagtgtacaatattgtaccatttccctctctaaatttgtgacttttcggtgaaattacag |
21189360 |
T |
|
| Q |
257 |
tgtcaattgttttcactccagagttgnnnnnnnctcagtttctctttctcttttcacaaaatttaagaagttgaaagttctaaagaatagaatatagaaa |
356 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||||||||| || ||||| ||||||||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
21189359 |
tgtcaattgttttcact--agagtttttttcttctccgtttctctttttcatttcataaaatttaacaagttcaaagttctaaagaatagaatataacaa |
21189262 |
T |
|
| Q |
357 |
ttgtcagcatcaagacatataaataaaacaaccagaaacatgagcaaaggaagaagtaaaaccttg |
422 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
21189261 |
ttagcagcatcaagacatataaataaaacaactagaaacatgagcaaatgaagaagtaacaccttg |
21189196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 378 - 607
Target Start/End: Complemental strand, 21155478 - 21155254
Alignment:
| Q |
378 |
aataaaacaaccagaaacatgagcaaaggaagaagtaaaaccttggagtttggttcaacagtcccacatcgatgggcttaaaagacaaagaggaagtttt |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |
|
|
| T |
21155478 |
aataaaacaaccagaaacatgagcaaaggaagaagtaacaccttggagtttggttcaacagtcccacatcgatgggcttaaaagaccaagatcatgtttt |
21155379 |
T |
|
| Q |
478 |
acctataaaagatccttctaaacatgtatgctaagtaaattgtttcaacctcaatgtctaacactgtgctatccatttaatttaatatctaatggtggtc |
577 |
Q |
| |
|
|||||||||| | ||||||| |||||| | ||||| || ||| ||||| || ||| |||||||||| | ||| || |||||||||| |||||| |
|
|
| T |
21155378 |
acctataaaacaaccttctatacatgtgaacgaagtatatggttccaaccccattgtttaacactgtgttgtcc-----atctaatatctaaatgtggtc |
21155284 |
T |
|
| Q |
578 |
attattaataattttaggtgcattgattct |
607 |
Q |
| |
|
|||| |||||||||| || | ||||||||| |
|
|
| T |
21155283 |
attagtaataatttttggggtattgattct |
21155254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 368 - 561
Target Start/End: Complemental strand, 21295944 - 21295747
Alignment:
| Q |
368 |
aagacatataaataaaacaaccagaaacatgagcaaaggaa----gaagtaaaaccttggagtttggttcaacagtcccacatcgatgggcttaaaagac |
463 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||| ||||| |||| ||||| |
|
|
| T |
21295944 |
aagatatataaataaaacaaccaaaaacatgagcaaaggaaaaaagaagtaacaccttagagtttagttcaacagtcccacatagatggacttagaagac |
21295845 |
T |
|
| Q |
464 |
aaagaggaagttttacctataaaagatccttctaaacatgtatgctaagtaaattgtttcaacctcaatgtctaacactgtgctatccatttaattta |
561 |
Q |
| |
|
|||||||| |||||||||||||| | | ||||| | |||| ||| |||||||||| ||||| |||||| ||||| ||| || ||||||||||||| |
|
|
| T |
21295844 |
caagaggaaattttacctataaaaaagctttctatatatgtgaactatgtaaattgttccaaccccaatgtttaacattgtactgtccatttaattta |
21295747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 422 - 519
Target Start/End: Complemental strand, 21203504 - 21203407
Alignment:
| Q |
422 |
ggagtttggttcaacagtcccacatcgatgggcttaaaagacaaagaggaagttttacctataaaagatccttctaaacatgtatgctaagtaaattg |
519 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| | |||| ||||||| ||||| |
|
|
| T |
21203504 |
ggagtttggttcaacagtcccacatcgacgggcttaaaagacaaagaggaagttttacctataaaacaaccttctataaatgtgagctaagtcaattg |
21203407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 290 - 370
Target Start/End: Complemental strand, 21203584 - 21203504
Alignment:
| Q |
290 |
ctcagtttctctttctcttttcacaaaatttaagaagttgaaagttctaaagaatagaatatagaaattgtcagcatcaag |
370 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || ||||| |||||| |||| |||||||||||| |||| |||||| |||| |
|
|
| T |
21203584 |
ctcagtttttctttctcttttcacaaaattgaacaagttcaaagttgtaaataatagaatatagcaattctcagcaccaag |
21203504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 642 - 702
Target Start/End: Complemental strand, 21189077 - 21189017
Alignment:
| Q |
642 |
aaattaaattttcatatgtttgggatttcgaaaatcaatatgctaaagtaattcagtgccc |
702 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||| | ||||| ||||||| |
|
|
| T |
21189077 |
aaattaaatttttatatgtttgggatttcgaaaatcaatttgctagaataattgagtgccc |
21189017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 659 - 703
Target Start/End: Complemental strand, 21205250 - 21205206
Alignment:
| Q |
659 |
gtttgggatttcgaaaatcaatatgctaaagtaattcagtgcccg |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21205250 |
gtttgggatttcgaaaatcaatatgctaaaataattcagtgcccg |
21205206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 470 - 608
Target Start/End: Complemental strand, 21117830 - 21117696
Alignment:
| Q |
470 |
gaagttttacctataaaa-gatccttctaaacatgtatgctaagtaaattgtttcaacctcaatgtctaacactgtgctatccatttaatttaatatcta |
568 |
Q |
| |
|
|||||||||||||||||| || || ||| |||||| | ||||||||||||| |||| |||||| ||||| ||| |||||||||||||| | || |
|
|
| T |
21117830 |
gaagttttacctataaaaagacccatctgtacatgttagttaagtaaattgttcaaaccccaatgtttaacattgtcctatccatttaatt-----ttta |
21117736 |
T |
|
| Q |
569 |
atggtggtcattattaataattttaggtgcattgattctt |
608 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||| |||||| |
|
|
| T |
21117735 |
atggtggtcattagtaatattttttagtgcattaattctt |
21117696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 21217236 - 21217184
Alignment:
| Q |
313 |
caaaatttaagaagttgaaagttctaaagaatagaatatagaaattgtcagca |
365 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
21217236 |
caaaatttaacaagttcaaagttctaaagaatagcatatacaaattttcagca |
21217184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 707
Target Start/End: Complemental strand, 21155227 - 21155162
Alignment:
| Q |
642 |
aaattaaattttcatatgtttgggatttcgaaaatcaatatgctaaagtaattcagtgcccggatt |
707 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||||||||| ||||||| ||||| ||| ||| |||| |
|
|
| T |
21155227 |
aaattaaattttcttatgtttggctttttgaaaatcaatctgctaaaataattgagttcccagatt |
21155162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 21185297 - 21185232
Alignment:
| Q |
314 |
aaaatttaagaagttgaaagttctaaagaatagaatatagaaattgtcagcatcaagacatataaa |
379 |
Q |
| |
|
|||||| || ||||| |||||| ||||||||| ||||| ||||| |||||| ||||||||||||| |
|
|
| T |
21185297 |
aaaattgaataagttcaaagttttaaagaataatatatacaaattctcagcaccaagacatataaa |
21185232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 21311322 - 21311286
Alignment:
| Q |
313 |
caaaatttaagaagttgaaagttctaaagaatagaat |
349 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
21311322 |
caaaatttaaaaagttcaaagttctaaagaatagaat |
21311286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 337 - 534
Target Start/End: Original strand, 21645879 - 21646079
Alignment:
| Q |
337 |
taaagaatagaatatagaaattgtcagcatcaagacatataaataaaacaaccagaaacatgagcaaaggaagaa----gtaaaaccttgga-gtttggt |
431 |
Q |
| |
|
|||| |||||||||||| |||| |||||| ||||| ||| |||| |||||| ||||||||||||||||||||| |||| |||||||| |||| || |
|
|
| T |
21645879 |
taaataatagaatatagcaattatcagcaccaagagata--aatagaacaacttgaaacatgagcaaaggaagaaagaagtaacaccttggaagtttagt |
21645976 |
T |
|
| Q |
432 |
tcaacagtcccacatcgatgggcttaaaagacaaagaggaagttttacctataaaagatccttctaaacatgtatgctaagtaaattgtttcaacctcaa |
531 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| || |||||||||||||||||||| | | || || |||||| |||||| ||||||||| ||||||||| |
|
|
| T |
21645977 |
tcaacagtcccacattgatgggcttcaaagaccaataggaagttttacctataaaacaacattttatacatgtgtgctaaataaattgttccaacctcaa |
21646076 |
T |
|
| Q |
532 |
tgt |
534 |
Q |
| |
|
||| |
|
|
| T |
21646077 |
tgt |
21646079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 701
Target Start/End: Original strand, 21658906 - 21658963
Alignment:
| Q |
644 |
attaaattttcatatgtttgggatttcgaaaatcaatatgctaaagtaattcagtgcc |
701 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| | ||||||| ||||| |||||| |
|
|
| T |
21658906 |
attaaattttcagatgtttgggatttcaaaaatcagtctgctaaaataattgagtgcc |
21658963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 421 - 497
Target Start/End: Original strand, 29531 - 29607
Alignment:
| Q |
421 |
tggagtttggttcaacagtcccacatcgatgggcttaaaagacaaagaggaagttttacctataaaagatccttcta |
497 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| | ||||||| |
|
|
| T |
29531 |
tggagtttggttcagcagtcccacatcgatgggcttaaaataccaagaggaagttttacctataaaacacccttcta |
29607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 460
Target Start/End: Original strand, 28400 - 28439
Alignment:
| Q |
421 |
tggagtttggttcaacagtcccacatcgatgggcttaaaa |
460 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
28400 |
tggagtttggttcaagagtcccacatcgaggggcttaaaa |
28439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 452
Target Start/End: Original strand, 62228 - 62262
Alignment:
| Q |
418 |
ccttggagtttggttcaacagtcccacatcgatgg |
452 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
62228 |
ccttagagtttggttcaacagtcccacatcgatgg |
62262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 47880004 - 47879942
Alignment:
| Q |
75 |
tggctgaaacttaactgaaacaacttattgaaaatgtagtgtttacagttccagtttcattca |
137 |
Q |
| |
|
||||||||||| ||||||||| || || ||||||||||||||||||||||||||| |||| |
|
|
| T |
47880004 |
tggctgaaactcaactgaaacgacggataagaaatgtagtgtttacagttccagtttccttca |
47879942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 44728396 - 44728331
Alignment:
| Q |
72 |
aaatggctgaaacttaactgaaacaacttattgaaaatgtagtgtttacagttccagtttcattca |
137 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||||||||||||| |||||||||| |||| |
|
|
| T |
44728396 |
aaatggctgaaactgaactgaaacaacctataagaaatgtagtgtttattattccagtttcgttca |
44728331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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