View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2710-Insertion-5 (Length: 686)

Name: NF2710-Insertion-5
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2710-Insertion-5
NF2710-Insertion-5
[»] chr1 (22 HSPs)
chr1 (8-686)||(1240167-1240860)
chr1 (266-487)||(23897857-23898085)
chr1 (232-379)||(49762375-49762520)
chr1 (273-400)||(35405374-35405500)
chr1 (232-399)||(33735669-33735840)
chr1 (224-399)||(15102967-15103137)
chr1 (234-375)||(22667123-22667261)
chr1 (231-398)||(1153648-1153813)
chr1 (319-487)||(23935127-23935299)
chr1 (229-375)||(29062287-29062432)
chr1 (307-399)||(8246714-8246810)
chr1 (257-352)||(35383763-35383857)
chr1 (277-399)||(3265435-3265555)
chr1 (304-379)||(38742453-38742527)
chr1 (277-390)||(35204188-35204299)
chr1 (290-350)||(45385216-45385276)
chr1 (301-394)||(4626523-4626616)
chr1 (300-390)||(10976110-10976199)
chr1 (350-392)||(34258839-34258881)
chr1 (309-379)||(45012809-45012878)
chr1 (401-487)||(22667683-22667769)
chr1 (296-373)||(34298940-34299015)
[»] chr8 (25 HSPs)
chr8 (243-400)||(13236220-13236376)
chr8 (265-399)||(43872546-43872679)
chr8 (235-399)||(13580286-13580448)
chr8 (269-399)||(26835561-26835684)
chr8 (300-424)||(9191202-9191331)
chr8 (265-399)||(22486550-22486685)
chr8 (264-379)||(31277947-31278062)
chr8 (230-396)||(4350587-4350755)
chr8 (290-395)||(35480984-35481089)
chr8 (312-399)||(22930360-22930446)
chr8 (350-399)||(34142063-34142112)
chr8 (220-337)||(34142152-34142267)
chr8 (232-379)||(21347430-21347574)
chr8 (256-399)||(18987120-18987261)
chr8 (316-379)||(32349535-32349598)
chr8 (316-379)||(32366196-32366259)
chr8 (234-356)||(24606852-24606974)
chr8 (269-379)||(26801911-26802019)
chr8 (296-401)||(36042854-36042957)
chr8 (308-390)||(41849429-41849510)
chr8 (265-380)||(9052935-9053048)
chr8 (294-381)||(12181877-12181962)
chr8 (294-381)||(12426305-12426390)
chr8 (399-431)||(28376652-28376684)
chr8 (275-379)||(39295473-39295575)
[»] chr2 (25 HSPs)
chr2 (223-400)||(36186525-36186701)
chr2 (256-399)||(30257728-30257870)
chr2 (222-400)||(16547702-16547879)
chr2 (265-399)||(16646916-16647049)
chr2 (258-400)||(2886975-2887116)
chr2 (268-395)||(38561885-38562010)
chr2 (273-400)||(37912331-37912457)
chr2 (277-399)||(34345968-34346087)
chr2 (290-399)||(5163831-5163939)
chr2 (230-357)||(34909237-34909364)
chr2 (294-380)||(4206325-4206410)
chr2 (394-487)||(37911371-37911464)
chr2 (267-390)||(44157263-44157384)
chr2 (307-399)||(32415357-32415446)
chr2 (265-378)||(28556563-28556674)
chr2 (273-397)||(38134112-38134234)
chr2 (308-399)||(18829973-18830064)
chr2 (319-399)||(40876936-40877015)
chr2 (307-378)||(17271259-17271329)
chr2 (277-372)||(14952039-14952134)
chr2 (269-336)||(28149029-28149094)
chr2 (264-322)||(15925950-15926008)
chr2 (296-378)||(35280919-35280999)
chr2 (321-378)||(28148948-28149004)
chr2 (308-399)||(45443652-45443747)
[»] chr6 (24 HSPs)
chr6 (233-380)||(33344879-33345024)
chr6 (254-379)||(34329769-34329893)
chr6 (233-380)||(35121874-35122018)
chr6 (256-399)||(9815621-9815762)
chr6 (237-487)||(12174259-12174520)
chr6 (229-400)||(34573109-34573277)
chr6 (243-399)||(31787854-31788006)
chr6 (262-378)||(10668835-10668948)
chr6 (255-360)||(34969844-34969949)
chr6 (235-366)||(4337556-4337686)
chr6 (290-336)||(18991756-18991802)
chr6 (394-487)||(35122048-35122141)
chr6 (265-337)||(13229399-13229467)
chr6 (290-396)||(32331529-32331634)
chr6 (277-390)||(11274601-11274712)
chr6 (226-398)||(21954402-21954571)
chr6 (394-434)||(33344788-33344828)
chr6 (301-374)||(31153630-31153702)
chr6 (227-324)||(31236880-31236976)
chr6 (296-399)||(34540848-34540950)
chr6 (243-380)||(9524773-9524906)
chr6 (399-466)||(10668980-10669047)
chr6 (294-331)||(19638395-19638432)
chr6 (401-478)||(13229255-13229332)
[»] chr7 (27 HSPs)
chr7 (222-399)||(21828200-21828375)
chr7 (224-399)||(3351119-3351292)
chr7 (231-400)||(12177846-12178010)
chr7 (232-400)||(26448410-26448578)
chr7 (234-373)||(40351695-40351831)
chr7 (278-399)||(35812653-35812774)
chr7 (275-399)||(3940619-3940741)
chr7 (255-378)||(26914291-26914412)
chr7 (307-399)||(21129326-21129417)
chr7 (251-399)||(42335888-42336035)
chr7 (233-378)||(15133233-15133376)
chr7 (264-378)||(22318620-22318733)
chr7 (266-399)||(26912366-26912497)
chr7 (245-391)||(48008521-48008661)
chr7 (277-399)||(9429306-9429426)
chr7 (295-399)||(13431651-13431754)
chr7 (308-380)||(30095739-30095810)
chr7 (235-399)||(33480418-33480580)
chr7 (402-487)||(15134556-15134641)
chr7 (289-337)||(37996569-37996617)
chr7 (296-374)||(36066176-36066252)
chr7 (264-423)||(49164733-49164892)
chr7 (398-464)||(30095861-30095927)
chr7 (276-399)||(48393248-48393372)
chr7 (399-434)||(21292832-21292867)
chr7 (229-307)||(31799670-31799748)
chr7 (399-432)||(37996503-37996536)
[»] chr4 (27 HSPs)
chr4 (223-487)||(23869986-23870259)
chr4 (234-399)||(43515782-43515947)
chr4 (230-399)||(12320443-12320611)
chr4 (229-424)||(35372031-35372230)
chr4 (223-399)||(3643060-3643235)
chr4 (236-434)||(5627488-5627691)
chr4 (308-399)||(36071557-36071647)
chr4 (259-399)||(7102182-7102322)
chr4 (265-378)||(55147627-55147739)
chr4 (251-378)||(7853355-7853480)
chr4 (229-399)||(2113878-2114047)
chr4 (272-400)||(20811471-20811598)
chr4 (292-399)||(29118510-29118617)
chr4 (296-377)||(40807834-40807914)
chr4 (296-400)||(4596447-4596550)
chr4 (277-336)||(48653769-48653828)
chr4 (349-399)||(15986910-15986960)
chr4 (349-395)||(29369937-29369983)
chr4 (272-336)||(7745943-7746008)
chr4 (220-267)||(32554527-32554574)
chr4 (230-329)||(37226342-37226441)
chr4 (264-326)||(8733031-8733093)
chr4 (313-366)||(6137756-6137808)
chr4 (307-378)||(7540403-7540474)
chr4 (363-399)||(40807924-40807960)
chr4 (363-399)||(55147880-55147916)
chr4 (442-486)||(55236220-55236264)
[»] chr5 (18 HSPs)
chr5 (223-399)||(18626697-18626868)
chr5 (264-399)||(32257641-32257775)
chr5 (223-400)||(20870668-20870842)
chr5 (223-399)||(3193437-3193612)
chr5 (233-399)||(7886539-7886702)
chr5 (264-399)||(16570452-16570586)
chr5 (308-399)||(502843-502931)
chr5 (300-390)||(12263638-12263727)
chr5 (237-399)||(25034282-25034442)
chr5 (223-378)||(10325515-10325672)
chr5 (276-399)||(3596880-3597002)
chr5 (264-366)||(39542481-39542581)
chr5 (254-298)||(20017605-20017649)
chr5 (293-378)||(37147841-37147925)
chr5 (399-434)||(7887289-7887324)
chr5 (296-373)||(16569290-16569364)
chr5 (276-313)||(39790027-39790064)
chr5 (296-336)||(14499064-14499104)
[»] chr3 (16 HSPs)
chr3 (231-399)||(33510019-33510187)
chr3 (229-399)||(27538708-27538875)
chr3 (275-380)||(11365105-11365209)
chr3 (277-399)||(15670957-15671075)
chr3 (251-399)||(33682605-33682752)
chr3 (266-390)||(47000824-47000946)
chr3 (235-380)||(11383651-11383791)
chr3 (278-376)||(168656-168752)
chr3 (252-387)||(33290750-33290883)
chr3 (265-337)||(52704608-52704680)
chr3 (253-399)||(19149800-19149940)
chr3 (318-379)||(54417032-54417092)
chr3 (295-390)||(17713321-17713414)
chr3 (295-390)||(19014550-19014643)
chr3 (308-378)||(46744007-46744076)
chr3 (310-376)||(39838529-39838593)
[»] scaffold0527 (2 HSPs)
scaffold0527 (266-372)||(1711-1816)
scaffold0527 (266-372)||(9774-9879)
[»] scaffold1173 (1 HSPs)
scaffold1173 (266-379)||(387-499)
[»] scaffold0777 (1 HSPs)
scaffold0777 (229-399)||(5884-6053)
[»] scaffold0531 (1 HSPs)
scaffold0531 (264-399)||(9740-9876)
[»] scaffold0001 (1 HSPs)
scaffold0001 (352-390)||(65088-65126)
[»] scaffold0031 (1 HSPs)
scaffold0031 (296-390)||(47535-47628)


Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 8 - 686
Target Start/End: Complemental strand, 1240860 - 1240167
Alignment:
Q  8 atttgttcaagtatctgcttcttctcctgaagttgatcctatctccttgaacaagcttgttcaaatacctgaatctgcacttgccatcatttccttcttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1240860 atttgttcaagtatctgcttcttctcctgaagttgatcctatctccttgaacaagcttgttcaaatacctgaatctgcacttgccatcatttccttcttc 1240761  T
Q  108 actctccaccgtttcttccgaaggtacgtaccaaaacaaattaatctcagcatagttttgcatgcatgtgtgtatactatcatggttttaaattgcaatt 207  Q
    |||||| |||| ||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1240760 actctctaccgcttcttccgaaggtacgcgccaaaacaaattaatctcatcatagttttgcatgcatgtgtgtatactatcatggttttaaattgcaatt 1240661  T
Q  208 gtgatcatagctatgcagggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgca 307  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  1240660 gtgatcacagctgcgcagggacggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctgatatttttcttcttgca 1240561  T
Q  308 ttttttgttgcaaaagattcatttataatcgaagttctctaa---aaaatatattttcaatagaattaatcaaagcagattaaaaagaaatata------ 398  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||||||||||          
T  1240560 ttttttgttgcaaaagattcatttataatcgaagttctctaaaaaaaaatatattttcaatagaattaatcaaagcggattaaaaagaaatatatttata 1240461  T
Q  399 ------taactactaagtaaaaataataatttcggtgcccctnnnnnnntggtgtcctgggctgctgcccctccatcccgccctcagggccaccctacat 492  Q
          ||||||||||||||||||||||||||  ||||||||       |||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  1240460 tagtactaactactaagtaaaaataataattttagtgcccctaaaaaaatggtgtcctgggctgccgcccctccatcccgccctcagggccaccctacgt 1240361  T
Q  493 tacaaacatatactctaaaccatgtaatgtgttatggtgcaggtatggcctaaggcaacttctactcttagatgcactgcaagatgacactacatatgtt 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1240360 tacaaacatatactctaaaccatgtaatgtgttatggtgcaggtatggcctaaggcaacttctattcttagatgcactgcaagatgacactacatatgtt 1240261  T
Q  593 cgtcgtggctacgcccgcgagctagagaaagcattcagatacttagcatacataatcctaccttctttctttgtagaacttgctcacaaaatca 686  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1240260 cgtcgcggctacgcccgcgagctagagaaagcattcagatacttagcatacataatcctaccttctttctttgtagaacttgctcacaaaatca 1240167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 266 - 487
Target Start/End: Original strand, 23897857 - 23898085
Alignment:
Q  266 aaattgtgcccttttaatt-atcctaatatttttcttcttgcatttt--ttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttc 362  Q
    ||||||||||||||||||| || | ||||||||||||||||||||||  ||||||||||| |||||||||||||| ||||| ||| |||||||| ||||     
T  23897857 aaattgtgcccttttaatttattcaaatatttttcttcttgcattttttttgttgcaaaatattcatttataatcaaagttatct-aaaaatat-tttta 23897954  T
Q  363 aatagaattaatcaaagcagattaaaaagaaatata------taactactaagtaaaaataataatttcggtgcccctnnnnnnntggtgtcctgggctg 456  Q
    ||||||||||||||||||| ||||||||| ||||||      |||||||||||||||||| ||||||| |||||||||       ||||  |||||||||    
T  23897955 aatagaattaatcaaagcaaattaaaaaggaatatatattactaactactaagtaaaaatgataattttggtgcccctaaaaaaatggttccctgggctg 23898054  T
Q  457 ctgcccctccatcccgccctcagggccaccc 487  Q
    | ||||||| | ||| |||||||||||||||    
T  23898055 ccgcccctcaagcccaccctcagggccaccc 23898085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 232 - 379
Target Start/End: Original strand, 49762375 - 49762520
Alignment:
Q  232 tcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcattt 331  Q
    |||||||||| ||| |||||||||||||||| |||||||||| | |||||||||| |||||| ||||||||||  |||||||||| || || | ||||||    
T  49762375 tcctaagatttttgatgccttggacgaaacaataaaattgtgtctttttaattattctaata-ttttcttcttatattttttgttacacaaaactcattt 49762473  T
Q  332 ataatcgaagttctctaaaaaatatattttcaatagaattaatcaaag 379  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  49762474 ataatcaaagttctct-aaaaatatattttcaatagaattaatcaaag 49762520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 273 - 400
Target Start/End: Complemental strand, 35405500 - 35405374
Alignment:
Q  273 gcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaatta 372  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||| |||||||| |||| |||| |||||    
T  35405500 gcccttttaattattcaaatatttttcttcttgcattttttgttgcaaaatattcatttctaatcaaagttatct-aaaaatattttttaaatataatta 35405402  T
Q  373 atcaaagcagattaaaaagaaatatata 400  Q
    ||||||||  ||||||||||||||||||    
T  35405401 atcaaagcgaattaaaaagaaatatata 35405374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 232 - 399
Target Start/End: Original strand, 33735669 - 33735840
Alignment:
Q  232 tcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgtt-----gcaaaagatt 326  Q
    |||||| ||| |||||| |||||   ||||| |||||||||||||||||||||||  ||||| ||||||||| |  |||||| ||     ||||||||||    
T  33735669 tcctaaaatttttggtgtcttgggtaaaacaataaaattgtgcccttttaattattttaatagttttcttctcgtttttttttttttttggcaaaagatt 33735768  T
Q  327 catttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||| ||||| ||||||| |||||||||||||| ||||||||||| || |||||||||||||||||    
T  33735769 catttataatcaaagttgtctaaaa-atatattttcaatataattaatcaaaccaaattaaaaagaaatatat 33735840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 224 - 399
Target Start/End: Original strand, 15102967 - 15103137
Alignment:
Q  224 agggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaag 323  Q
    |||| |||||||||| || |||||||| | | ||||||| ||||||||||  |||||||||||   ||||||    |||||| ||||||||||||| |||    
T  15102967 agggccggtcctaagttttttggtgccataggcgaaacaataaaattgtgttcttttaattatttcaatatt----ttcttgtattttttgttgcacaag 15103062  T
Q  324 attcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||||||||||| ||||||||| ||||||||   ||||||||||||||||||| || | |||||||||||||||    
T  15103063 attcatttataatcaaagttctct-aaaaatattacttcaatagaattaatcaaaacaaagtaaaaagaaatatat 15103137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 234 - 375
Target Start/End: Original strand, 22667123 - 22667261
Alignment:
Q  234 ctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttat 333  Q
    |||||||| |||||||| |||| |||||| |||| || | ||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||    
T  22667123 ctaagatttttggtgccatgga-gaaacaataaa-ttatacccttttaattattcaaatatttttcttcttgcattttttattgcaaaatattcatttat 22667220  T
Q  334 aatcgaagttctctaaaaaatatattttcaatagaattaatc 375  Q
    |||| ||||| ||  ||||||| |||||||||||||||||||    
T  22667221 aatcaaagttatc-caaaaataaattttcaatagaattaatc 22667261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 231 - 398
Target Start/End: Original strand, 1153648 - 1153813
Alignment:
Q  231 gtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatt 330  Q
    ||||||||||| |||||| | ||  |||| || |||| |||| || |||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||    
T  1153648 gtcctaagatttttggtgtcctgtgcgaatcaataaagttgtaccgttttaattatccgaatatctttcttcttgcgttttttgttgcaaaagattaatt 1153747  T
Q  331 tataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatata 398  Q
     | |||| |||||||||  |||| ||||||| |||||||||||| |||| || ||||||| |||||||    
T  1153748 gaaaatcaaagttctct-taaaacatatttttaatagaattaattaaaggag-ttaaaaacaaatata 1153813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 319 - 487
Target Start/End: Complemental strand, 23935299 - 23935127
Alignment:
Q  319 aaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatata------taactactaagtaa 412  Q
    |||| |||||||||||||| ||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||      ||||||||||||||    
T  23935299 aaaatattcatttataatcaaagttatctaaaaa-tat-ttttaaatagaattaatcaaagcagattaaaaagaaatatatattactaactactaagtaa 23935202  T
Q  413 aaataataatttcggtgcccctnnnnnnntggtgtcctgggctgctgcccctccatcccgccctcagggccaccc 487  Q
    ||||  |||||| |||| ||||       ||||| |||||||||| ||||||| | ||| || ||||||||||||    
T  23935201 aaatgttaattttggtgaccctaaaaaaatggtgccctgggctgccgcccctcaagcccaccttcagggccaccc 23935127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 229 - 375
Target Start/End: Original strand, 29062287 - 29062432
Alignment:
Q  229 cggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattca 328  Q
    ||||| ||||||| ||||||  ||  |||||||| ||||||  ||| ||||||||||  | ||||| |||||||||| |||||||||||||||||||| |    
T  29062287 cggtcttaagatttttggtgttttaaacgaaacaataaaataatgctcttttaattactccaatatatttcttcttgtattttttgttgcaaaagattta 29062386  T
Q  329 tttataatcgaagttctctaaaaaatatattttcaatagaattaatc 375  Q
    ||||||||  ||||||||| || |||||||||| ||| |||||||||    
T  29062387 tttataataaaagttctct-aacaatatattttaaattgaattaatc 29062432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 8246714 - 8246810
Alignment:
Q  307 attttttgttgcaaa--agattcatttataatcgaagttctctaaaa--aatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||||| |  |||||||||||||||  ||||||| |||||  ||||||||||||||||||||||||||| || |||||||||||||||||    
T  8246714 attttttgttgcatataagattcatttataattaaagttctataaaaaaaatatattttcaatagaattaatcaaatcaaattaaaaagaaatatat 8246810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 257 - 352
Target Start/End: Original strand, 35383763 - 35383857
Alignment:
Q  257 gaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaa 352  Q
    |||||| | |||||||| | |||||||||| ||||||| ||||| ||| |||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  35383763 gaaacaatcaaattgtgtcattttaattattctaatatatttctacttacatttt-tgttgcaaaagtttcatttataatcaaagttctctaaaaa 35383857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 277 - 399
Target Start/End: Original strand, 3265435 - 3265555
Alignment:
Q  277 ttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatca 376  Q
    |||||||||| | ||| | ||||||| ||||||||||||||||||||||||||| |||||  |||||||||  |||| |||||||||  |||||| ||||    
T  3265435 ttttaattattcgaatgtctttcttcgtgcattttttgttgcaaaagattcattgataataaaagttctct-taaaacatattttcataagaatt-atca 3265532  T
Q  377 aagcagattaaaaagaaatatat 399  Q
    |||    ||||||||||||||||    
T  3265533 aagggagttaaaaagaaatatat 3265555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 38742527 - 38742453
Alignment:
Q  304 tgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaag 379  Q
    |||||||||| ||| |||||||| ||| |||||| |||||||||| |||||||||||||||||||  |||||||||    
T  38742527 tgcatttttttttgtaaaagattaattcataatcaaagttctcta-aaaatatattttcaatagatataatcaaag 38742453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 390
Target Start/End: Original strand, 35204188 - 35204299
Alignment:
Q  277 ttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatca 376  Q
    |||||||||| | ||| ||||| |||||| | ||||| |||||||| ||||||| |||||| || |||||| |||||||| || |||||| |||||||||    
T  35204188 ttttaattattccaatgttttttttcttgtactttttattgcaaaatattcattcataatcaaaattctct-aaaaatat-ttgtcaatataattaatca 35204285  T
Q  377 aagcagattaaaaa 390  Q
    |||||  |||||||    
T  35204286 aagcaatttaaaaa 35204299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 350
Target Start/End: Original strand, 45385216 - 45385276
Alignment:
Q  290 aatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaa 350  Q
    |||||||||| ||||| |||||||||||||||||||||||| | |||| | ||||||||||    
T  45385216 aatatttttcctcttgtattttttgttgcaaaagattcattgaaaatcaaggttctctaaa 45385276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 301 - 394
Target Start/End: Original strand, 4626523 - 4626616
Alignment:
Q  301 tcttgcattttttgttgcaaaagat-tcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaa 394  Q
    ||||| ||||||| ||||||||||| ||||| |||||  ||| | | | |||||||||||||||||||||||||||||||   ||||||||||||    
T  4626523 tcttgtattttttattgcaaaagatctcattcataat-taaggttttttaaaaatatattttcaatagaattaatcaaagagaattaaaaagaaa 4626616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 300 - 390
Target Start/End: Original strand, 10976110 - 10976199
Alignment:
Q  300 ttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaa 390  Q
    ||||| |||||||| ||| |||||||| |||||||||| ||||| | ||||| |||||||||||||| |||  || |||||| ||||||||    
T  10976110 ttcttacattttttattgtaaaagatttatttataatcaaagttttataaaa-atatattttcaatataatcgatgaaagcaaattaaaaa 10976199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 350 - 392
Target Start/End: Complemental strand, 34258881 - 34258839
Alignment:
Q  350 aaaatatattttcaatagaattaatcaaagcagattaaaaaga 392  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||    
T  34258881 aaaatattttttcaatagaattaatcaaaacaggttaaaaaga 34258839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 45012809 - 45012878
Alignment:
Q  309 tttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaag 379  Q
    ||||||||| |||||||||||| |||||| |  | |||  ||||||| |||||||||||||||||||||||    
T  45012809 tttttgttgtaaaagattcattcataatcaagatactc-gaaaaataaattttcaatagaattaatcaaag 45012878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 487
Target Start/End: Original strand, 22667683 - 22667769
Alignment:
Q  401 actactaagtaaaaataataatttcggtgcccctnnnnnnntggtgtcctgggctgctgcccctccatcccgccctcagggccaccc 487  Q
    |||||||| |||||||||||||||  ||||||||       ||||| ||| |||||| ||||||| | ||||||||||| |||||||    
T  22667683 actactaaataaaaataataatttttgtgcccctaaataaatggtgccctaggctgccgcccctcaaacccgccctcagagccaccc 22667769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 34298940 - 34299015
Alignment:
Q  296 tttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaa 373  Q
    ||||||||| | ||||||| || |||||||| ||| |||||| ||||||| |||||| ||||| ||||||||||||||    
T  34298940 tttcttcttacgttttttgctggaaaagatttattcataatc-aagttctttaaaaa-tatatgttcaatagaattaa 34299015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 13236376 - 13236220
Alignment:
Q  243 ttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagt 342  Q
    |||||||| |||| |||||| ||||||| |||| |||||||||| | |||||||||||||||||||| |||||||||||| |||| ||||||||| ||||    
T  13236376 ttggtgccctggatgaaacaataaaattatgccattttaattattccaatatttttcttcttgcattatttgttgcaaaaaattcgtttataatcaaagt 13236277  T
Q  343 tctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatata 400  Q
    |||||| |||||||||||||| ||||||||||||||||  ||||||||||||||||||    
T  13236276 tctcta-aaaatatattttcattagaattaatcaaagcgaattaaaaagaaatatata 13236220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 265 - 399
Target Start/End: Complemental strand, 43872679 - 43872546
Alignment:
Q  265 aaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaa 364  Q
    |||||||| ||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||| | |||||||||||| |||    
T  43872679 aaaattgtacccttttaattattctaatatttttctttttgtattttttgttgcacaagattcatttataatcaaagttct-ttaaaaatatatttacaa 43872581  T
Q  365 tagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||||||| |||||| ||||| |||||||||||    
T  43872580 tagaattaatgaaagcaaattaagaagaaatatat 43872546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 235 - 399
Target Start/End: Original strand, 13580286 - 13580448
Alignment:
Q  235 taagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttata 334  Q
    ||||||| |||||| | ||||||||||| |||| || ||  ||||||||||| |||||||||||  |||||||||||||||||||||| |||||||||||    
T  13580286 taagatttttggtgtcctggacgaaacaataaa-ttatgttcttttaattattctaatattttttgtcttgcattttttgttgcaaaatattcatttata 13580384  T
Q  335 atcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    | | ||||| | | ||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  13580385 accaaagttat-ttaaaaatatattttcaatagaattaatcaaagcgaattaaaaagaaatatat 13580448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 269 - 399
Target Start/End: Original strand, 26835561 - 26835684
Alignment:
Q  269 ttgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaataga 368  Q
    |||||||||||||||||| ||||||||||| |      ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  26835561 ttgtgcccttttaattattctaatatttttgt------attttttgttgcacaagattcatttataatcaaagttctctaaaa-atatattttcaataga 26835653  T
Q  369 attaatcaaagcagattaaaaagaaatatat 399  Q
    |||||| |||| | |||||||||||||||||    
T  26835654 attaataaaagaaaattaaaaagaaatatat 26835684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 300 - 424
Target Start/End: Complemental strand, 9191331 - 9191202
Alignment:
Q  300 ttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaa----- 394  Q
    |||||||||| ||||||| |||||||||||||||||||  ||||||||| |||||||||||| |||||||||||||||||   |||||||| |||         
T  9191331 ttcttgcattatttgttgtaaaagattcatttataatcatagttctcta-aaaatatattttgaatagaattaatcaaagtgaattaaaaataaatatat 9191233  T
Q  395 -tatataactactaagtaaaaataataattt 424  Q
     ||||||||||||||||||||||||||||||    
T  9191232 ctatataactactaagtaaaaataataattt 9191202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 265 - 399
Target Start/End: Original strand, 22486550 - 22486685
Alignment:
Q  265 aaaattgtgcccttttaattatcctaatatttt---tcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatatttt 361  Q
    |||||||| ||||||||||||| ||||||||||   |||| ||  ||||||| ||||| ||||||||||||||||| ||||||||| ||||  |||||||    
T  22486550 aaaattgtacccttttaattattctaatattttttgtctttttttatttttt-ttgcacaagattcatttataatcaaagttctct-aaaatgatatttt 22486647  T
Q  362 caatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||||||||| || |||||||||||| ||||    
T  22486648 caatagaattaatcaaaacaaattaaaaagaaacatat 22486685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 31278062 - 31277947
Alignment:
Q  264 taaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttca 363  Q
    |||| ||||||| |||| ||||| | ||| | |||||||||| |||||| | |||||||||||||||||||||| | ||||||||||| | |||||||||    
T  31278062 taaagttgtgccatttttattattcgaatctctttcttcttgaatttttaggtgcaaaagattcatttataatcaaggttctctaaaataaatattttca 31277963  T
Q  364 atagaattaatcaaag 379  Q
    ||||||||||||||||    
T  31277962 atagaattaatcaaag 31277947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 230 - 396
Target Start/End: Original strand, 4350587 - 4350755
Alignment:
Q  230 ggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattc-- 327  Q
    ||||||| |||| || ||| | ||||||||||| |||| |||| |||||||||||||  |||||||||| |||||||||||||||||| |||| ||||      
T  4350587 ggtcctaggatttttcgtgtcctggacgaaacaataaa-ttgtacccttttaattattttaatattttttttcttgcattttttgttgaaaaatattcgt 4350685  T
Q  328 --atttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaata 396  Q
      || ||||||| ||||| | | ||||||||||||||||||||||||| ||||||  |||||||| |||||    
T  4350686 ttatatataatcaaagttatat-aaaaatatattttcaatagaattaaccaaagcgaattaaaaaaaaata 4350755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 290 - 395
Target Start/End: Original strand, 35480984 - 35481089
Alignment:
Q  290 aatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatat-attttcaatagaattaatcaaagcagattaaa 388  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||| | ||||||| |||||||| |||||||||||||||| | ||||| | ||||     
T  35480984 aatatttttcttcttgtattttttgttgcaaaagatttttttataatcaatgttctct-aaaaatatcattttcaatagaattattgaaagcgggttaat 35481082  T
Q  389 aagaaat 395  Q
    |||||||    
T  35481083 aagaaat 35481089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 312 - 399
Target Start/End: Complemental strand, 22930446 - 22930360
Alignment:
Q  312 ttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||| |||| |||||||||||||| ||||| |||||||| ||| |||||||||||||||||||||||  |||||||||| ||||||    
T  22930446 ttgttgtaaaatattcatttataatcaaagttatctaaaaa-tattttttcaatagaattaatcaaagcgaattaaaaagatatatat 22930360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 34142112 - 34142063
Alignment:
Q  350 aaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34142112 aaaatatattttcaatagaattaatcaaagcggattaaaaagaaatatat 34142063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 220 - 337
Target Start/End: Complemental strand, 34142267 - 34142152
Alignment:
Q  220 atgcagggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgca 319  Q
    |||||||| ||||||||||||| ||| |||  ||||||||||| |||| |||| |||||||||||||  |||| ||||| ||| ||||||||||||||      
T  34142267 atgcagggccggtcctaagatttttgatgctctggacgaaacaataaa-ttgtacccttttaattattttaattttttt-ttcgtgcattttttgttgat 34142170  T
Q  320 aaagattcatttataatc 337  Q
    ||| ||||||||||||||    
T  34142169 aaatattcatttataatc 34142152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 232 - 379
Target Start/End: Original strand, 21347430 - 21347574
Alignment:
Q  232 tcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcattt 331  Q
    |||||| ||| ||||| || ||| | ||||| ||||||||||  |||||||||||  |   |||||| || ||| ||||||  ||||| |||||||||||    
T  21347430 tcctaacatttttggtaccatgggccaaacaataaaattgtggtcttttaattat--ttcgatttttttttttgtatttttgattgcacaagattcattt 21347527  T
Q  332 ataatcgaagttctctaaaaaatatattttcaatagaattaatcaaag 379  Q
    |||||| || || | ||||| |||||||||||||||||||||||||||    
T  21347528 ataatcaaatttatttaaaa-atatattttcaatagaattaatcaaag 21347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 256 - 399
Target Start/End: Original strand, 18987120 - 18987261
Alignment:
Q  256 cgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaata 355  Q
    ||||||| |||||||||| |||||||| | | ||||||| ||| ||||| ||  |||| || ||||||||| ||| || ||| |||||||||||||| ||    
T  18987120 cgaaacaataaaattgtgtccttttaaatcttctaatatatttattctttcaaattttttt-caaaagattaattcattatcaaagttctctaaaaa-ta 18987217  T
Q  356 tattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    || |||||||| |||||||||||    |||| ||||||||||||    
T  18987218 taatttcaatataattaatcaaacataattacaaagaaatatat 18987261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 32349598 - 32349535
Alignment:
Q  316 tgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaag 379  Q
    ||||||||||||||  |||||| | ||||||||||| | |||||||||||||||||||||||||    
T  32349598 tgcaaaagattcatccataatcaatgttctctaaaagaaatattttcaatagaattaatcaaag 32349535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 32366259 - 32366196
Alignment:
Q  316 tgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaag 379  Q
    ||||||||||||||  |||||| | ||||||||||| | |||||||||||||||||||||||||    
T  32366259 tgcaaaagattcatccataatcaatgttctctaaaagaaatattttcaatagaattaatcaaag 32366196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 356
Target Start/End: Complemental strand, 24606974 - 24606852
Alignment:
Q  234 ctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttat 333  Q
    |||||||| |||||| ||| | |||| ||  ||| ||||| ||||||| ||||   ||| | ||||||||| ||||||||| ||||||||||||||||||    
T  24606974 ctaagatttttggtgtcttaggcgaatcaacaaagttgtgtccttttagttatttaaatgtctttcttcttacattttttgctgcaaaagattcatttat 24606875  T
Q  334 aatcgaagttctctaaaaaatat 356  Q
    ||   ||||||| ||||||||||    
T  24606874 aaataaagttctttaaaaaatat 24606852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 379
Target Start/End: Complemental strand, 26802019 - 26801911
Alignment:
Q  269 ttgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaataga 368  Q
    ||||||||||||||||||   ||| |||||||| ||  ||||||||||||||| || || ||||||||| | ||||||| || |||||| |||||||| |    
T  26802019 ttgtgcccttttaattatttgaatgtttttcttattaaattttttgttgcaaaggactcgtttataatcaatgttctct-aataatata-tttcaatata 26801922  T
Q  369 attaatcaaag 379  Q
    |||||||||||    
T  26801921 attaatcaaag 26801911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 401
Target Start/End: Original strand, 36042854 - 36042957
Alignment:
Q  296 tttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaat 395  Q
    |||||||||| |||||||||||||||| ||| ||| |||||| | ||||| |  |||||||||||| |||| ||||||||||| || ||||| || | ||    
T  36042854 tttcttcttgtattttttgttgcaaaaaattaattcataatcaaggttcttt--aaaatatattttaaataaaattaatcaaaacaaattaagaaaatat 36042951  T
Q  396 atataa 401  Q
    ||||||    
T  36042952 atataa 36042957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 41849510 - 41849429
Alignment:
Q  308 ttttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaa 390  Q
    |||||||||| |||||||||||| |||||| |  |||| |||||| |||||||||||||||||||||||| |||  |||||||    
T  41849510 ttttttgttgaaaaagattcattaataatcaagattctttaaaaa-tatattttcaatagaattaatcaatgcaagttaaaaa 41849429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 265 - 380
Target Start/End: Complemental strand, 9053048 - 9052935
Alignment:
Q  265 aaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaa 364  Q
    ||||||||  ||||||||||||   ||| | |||||| |  |||||||||||| |||||| ||||| |||||| | ||||||| ||| ||||||||||||    
T  9053048 aaaattgtttccttttaattatttaaatgtatttcttttcacattttttgttgtaaaagaatcattcataatcaaggttctct-aaatatatattttcaa 9052950  T
Q  365 tagaattaatcaaagc 380  Q
    || ||||||| |||||    
T  9052949 ta-aattaattaaagc 9052935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 12181962 - 12181877
Alignment:
Q  294 tttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagca 381  Q
    ||||| |||||| | |||||||||||||| ||||||| |||||| || ||||||| ||||||| || |||||| ||||| ||||||||    
T  12181962 ttttttttcttgtactttttgttgcaaaatattcattcataatcaaaattctcta-aaaatat-ttgtcaatataattagtcaaagca 12181877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 12426390 - 12426305
Alignment:
Q  294 tttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagca 381  Q
    ||||| |||||| | |||||||||||||| ||||||| |||||| || ||||||| ||||||| || |||||| ||||| ||||||||    
T  12426390 ttttttttcttgtactttttgttgcaaaatattcattcataatcaaaattctcta-aaaatat-ttgtcaatataattagtcaaagca 12426305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 399 - 431
Target Start/End: Complemental strand, 28376684 - 28376652
Alignment:
Q  399 taactactaagtaaaaataataatttcggtgcc 431  Q
    |||||||||||||||||||||||||| ||||||    
T  28376684 taactactaagtaaaaataataattttggtgcc 28376652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 39295473 - 39295575
Alignment:
Q  275 ccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaat 374  Q
    |||||||||||| | ||| | ||||||| || | |||||||||||||| || ||||| ||||  | ||| ||| |||||| ||||||||||||||| |||    
T  39295473 ccttttaattattcgaatgtgtttcttcatgtaatttttgttgcaaaaaatccatttgtaat-aaggttttct-aaaaatgtattttcaatagaatcaat 39295570  T
Q  375 caaag 379  Q
    |||||    
T  39295571 caaag 39295575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 2e-45; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 223 - 400
Target Start/End: Original strand, 36186525 - 36186701
Alignment:
Q  223 cagggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaa 322  Q
    ||||| || |||||||||| |||||||| |  ||||||| |||||||| || |||||||||||| ||||| ||||||||| | |||||||||||||||||    
T  36186525 cagggtcgatcctaagatttttggtgccctaaacgaaacggtaaaattttgtccttttaattattctaatgtttttcttcatacattttttgttgcaaaa 36186624  T
Q  323 gattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatata 400  Q
    |||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||||   ||||||||||||||||||    
T  36186625 gatttatttataatcaaagttctct-aaaaatatattttcaatataattaatcaaagagaattaaaaagaaatatata 36186701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 256 - 399
Target Start/End: Original strand, 30257728 - 30257870
Alignment:
Q  256 cgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaata 355  Q
    ||||||| ||| ||||||||||||||| |||  ||||||||||  |||||||||||||||| ||||||||| |||||||||| ||||||||| |||||||    
T  30257728 cgaaacaataagattgtgcccttttaaatattttaatattttttatcttgcattttttgtttcaaaagatttatttataatcaaagttctct-aaaaata 30257826  T
Q  356 tattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||| ||||||||||| |  ||| |||||||||||||    
T  30257827 tattttcaatataattaatcaaaccgaattgaaaagaaatatat 30257870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 222 - 400
Target Start/End: Complemental strand, 16547879 - 16547702
Alignment:
Q  222 gcagggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaa 321  Q
    |||||| | ||||||||||| || ||||  ||||||||||| |||||||||| |||||||||  |   |||| |||||||||| |||||||||||| |||    
T  16547879 gcagggtcagtcctaagattttttgtgctctggacgaaacaataaaattgtgtccttttaatagtttcaatagttttcttcttacattttttgttgtaaa 16547780  T
Q  322 agattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatata 400  Q
    |||| ||||||||||| ||||| ||||||| | |||||||||||| ||||||||||| || |||||||| |||||||||    
T  16547779 agatccatttataatcaaagttttctaaaata-atattttcaatataattaatcaaaccaaattaaaaaaaaatatata 16547702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 265 - 399
Target Start/End: Original strand, 16646916 - 16647049
Alignment:
Q  265 aaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaa 364  Q
    |||||| | |||||||||||||  ||||||||||||||||  ||||||||||||| ||||||||||||||||  || |||||| ||||| ||||||||||    
T  16646916 aaaattatacccttttaattattttaatatttttcttcttttattttttgttgcacaagattcatttataattaaaattctct-aaaaagatattttcaa 16647014  T
Q  365 tagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||||||||||| || |||||||||||||||||    
T  16647015 tagaattaatcaaaacaaattaaaaagaaatatat 16647049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 258 - 400
Target Start/End: Original strand, 2886975 - 2887116
Alignment:
Q  258 aaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatata 357  Q
    ||||| ||||||||| || |||||||||| |||||| ||||||||||||||||||||||| | | |||| |||||||||| ||||||||| ||||||||     
T  2886975 aaacaataaaattgtacctttttaattattctaatacttttcttcttgcattttttgttgtagatgatttatttataatcaaagttctct-aaaaatatt 2887073  T
Q  358 ttttcaatagaattaatcaaagcagattaaaaagaaatatata 400  Q
    |||| |||||||||||||||| |  |||||||| |||| ||||    
T  2887074 tttttaatagaattaatcaaaacgaattaaaaaaaaatctata 2887116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 268 - 395
Target Start/End: Complemental strand, 38562010 - 38561885
Alignment:
Q  268 attgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatag 367  Q
    |||||||| |||||| | | |||||||||||||| ||| ||||||||||||| || |||||||||||||  ||||||||||||||| ||||||||||| |    
T  38562010 attgtgccattttaactgttctaatatttttctttttgtattttttgttgcacaatattcatttataatgaaagttctctaaaaaa-atattttcaat-g 38561913  T
Q  368 aattaatcaaagcagattaaaaagaaat 395  Q
    ||||||||||| || |||||||||||||    
T  38561912 aattaatcaaaacaaattaaaaagaaat 38561885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 273 - 400
Target Start/End: Complemental strand, 37912457 - 37912331
Alignment:
Q  273 gcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaatta 372  Q
    |||||||||||||| | ||||||||||| ||| |||| |||||||||||| |||||||||||||| |||||  |  |||||||||||||||| ||||| |    
T  37912457 gcccttttaattattcaaatatttttctccttacattgtttgttgcaaaatattcatttataatcaaagtt-acccaaaaatatattttcaagagaataa 37912359  T
Q  373 atcaaagcagattaaaaagaaatatata 400  Q
    ||||||||  |||||||||| |||||||    
T  37912358 atcaaagcgaattaaaaagatatatata 37912331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 277 - 399
Target Start/End: Complemental strand, 34346087 - 34345968
Alignment:
Q  277 ttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatca 376  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||| |||| || |||| | |||||||||||||||||| || ||||||    
T  34346087 ttttaaatattctaatatttttcttcttgtattttttgttgcaaaag-ttcatttagaatcaaaattctat-aaaaatatattttcaatataactaatca 34345990  T
Q  377 aagcagattaaaaagaaatatat 399  Q
    || || ||| |||||||||||||    
T  34345989 aaccaaatt-aaaagaaatatat 34345968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 290 - 399
Target Start/End: Complemental strand, 5163939 - 5163831
Alignment:
Q  290 aatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaa 389  Q
    |||| |||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||| | ||||| |||||| ||||||||||| |  |||||||    
T  5163939 aatagttttcttcttacattttttgttacaaaagattcatttataatcaaagttttctaaaata-atattctcaatataattaatcaaaccgaattaaaa 5163841  T
Q  390 agaaatatat 399  Q
    ||| ||||||    
T  5163840 agatatatat 5163831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 230 - 357
Target Start/End: Original strand, 34909237 - 34909364
Alignment:
Q  230 ggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcat 329  Q
    |||||||||||| ||| || ||| | | ||||| ||||||| || ||||||||||||   |||| |||||||||| ||||||||||||||||| ||||||    
T  34909237 ggtcctaagatttttgatgtcttaggcaaaacaataaaattttgtccttttaattatttcaataattttcttcttacattttttgttgcaaaatattcat 34909336  T
Q  330 ttataatcgaagttctctaaaaaatata 357  Q
    ||||| || ||||| | | |||||||||    
T  34909337 ttatagtcaaagtttttttaaaaatata 34909364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 380
Target Start/End: Original strand, 4206325 - 4206410
Alignment:
Q  294 tttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagc 380  Q
    ||||| ||||||||||||||||||||||| |||||||||||||  ||||| ||| |||| ||| |||| ||||||||||||||||||    
T  4206325 ttttttttcttgcattttttgttgcaaaatattcatttataattaaagttatct-aaaagtattttttaaatagaattaatcaaagc 4206410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 394 - 487
Target Start/End: Complemental strand, 37911464 - 37911371
Alignment:
Q  394 atatataactactaagtaaaaataataatttcggtgcccctnnnnnnntggtgtcctgggctgctgcccctccatcccgccctcagggccaccc 487  Q
    |||||||||||||||| |||||||||||||| |||||||||       |||||||||||||||| ||||||| |  |||| |||||||||||||    
T  37911464 atatataactactaagcaaaaataataattttggtgcccctaaataaatggtgtcctgggctgccgcccctcaaggccgcgctcagggccaccc 37911371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 267 - 390
Target Start/End: Complemental strand, 44157384 - 44157263
Alignment:
Q  267 aattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaata 366  Q
    ||||||| ||||||||||||   ||||| |||||||||| | |||||| |||||||  |||||| |||||| |  ||||||||||| |||||||  ||||    
T  44157384 aattgtgtccttttaattatttgaatatatttcttcttgtaatttttgctgcaaaat-ttcattcataatcaagtttctctaaaaa-tatatttctaata 44157287  T
Q  367 gaattaatcaaagcagattaaaaa 390  Q
    ||||||||||||||| ||| ||||    
T  44157286 gaattaatcaaagcaaattgaaaa 44157263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 307 - 399
Target Start/End: Complemental strand, 32415446 - 32415357
Alignment:
Q  307 attttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||   |||| ||||||| |||||||||||     ||||||||||||||||    
T  32415446 attttttgttgcaaaagatgcattcataatcgaggttctctaaaa---atatattcaataaaattaatcaaaatgagttaaaaagaaatatat 32415357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 265 - 378
Target Start/End: Original strand, 28556563 - 28556674
Alignment:
Q  265 aaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaa 364  Q
    ||||||||||||||||||||||   ||| ||||| || || |||||||| || | |||||||| ||||| ||| ||||||| | ||||||||||||| ||    
T  28556563 aaaattgtgcccttttaattatttcaat-tttttttttttacattttttatttccaaagattcgtttatcatcaaagttct-ttaaaaatatatttttaa 28556660  T
Q  365 tagaattaatcaaa 378  Q
    || |||||||||||    
T  28556661 tataattaatcaaa 28556674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 273 - 397
Target Start/End: Complemental strand, 38134234 - 38134112
Alignment:
Q  273 gcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaatta 372  Q
    ||||||||| |||| | ||| | ||| ||||| |||||||||||||||||||||||||  |||   | ||||||||||||  ||||||| |||| |||||    
T  38134234 gcccttttagttattcaaatgtcttttttcttacattttttgttgcaaaagattcattcgtaaataaggttctctaaaaa--atatttttaatataatta 38134137  T
Q  373 atcaaagcagattaaaaagaaatat 397  Q
    |||||| |   ||||||||||||||    
T  38134136 atcaaatcgagttaaaaagaaatat 38134112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 18829973 - 18830064
Alignment:
Q  308 ttttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagca-gattaaaaagaaatatat 399  Q
    |||||| |||||||| ||||||| ||||||   ||||||||||| |||||||||||||| ||||||||| |||| | | ||||||||||||||    
T  18829973 tttttttttgcaaaaaattcattcataatcattgttctctaaaa-atatattttcaataaaattaatcatagcatgttaaaaaagaaatatat 18830064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 40876936 - 40877015
Alignment:
Q  319 aaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||||||| | |||||| | ||||| ||||| ||||||||||||||||||||||| || ||  ||||||||||||||||    
T  40876936 aaaagattcactcataatcaaggttctataaaa-atatattttcaatagaattaatccaaacaagttaaaaagaaatatat 40877015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 17271259 - 17271329
Alignment:
Q  307 attttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaa 378  Q
    ||||||| | ||| ||||||||||||||||| |||||  |||||| |||||||||||||| |||||||||||    
T  17271259 attttttatcgcacaagattcatttataatcaaagtttgctaaaa-atatattttcaatataattaatcaaa 17271329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 372
Target Start/End: Complemental strand, 14952134 - 14952039
Alignment:
Q  277 ttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaa-gttctctaaaaaatatattttcaatagaatta 372  Q
    |||||||||| | ||||| |||||| || || |||||||||||||| |||||||  ||||| || ||||||| |||||| |||||||||||| ||||    
T  14952134 ttttaattattcgaatatctttctttttacaatttttgttgcaaaatattcattcctaatcaaaggttctct-aaaaatgtattttcaataggatta 14952039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 28149094 - 28149029
Alignment:
Q  269 ttgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataat 336  Q
    ||||||||||| |||||| ||||||||||| |||||| ||||||||||| |||| ||| |||||||||    
T  28149094 ttgtgccctttaaattattctaatattttt-ttcttgtattttttgttggaaaaaatt-atttataat 28149029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 15926008 - 15925950
Alignment:
Q  264 taaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaa 322  Q
    ||||||||| || || |||||||   ||||||||||||||| |||||||||||||||||    
T  15926008 taaaattgtacctttataattatttaaatatttttcttcttacattttttgttgcaaaa 15925950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 35280919 - 35280999
Alignment:
Q  296 tttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaa 378  Q
    ||||||||||||||||||  || |||||||||||| |||||   | || | | ||||||||||||||||||||||||||||||    
T  35280919 tttcttcttgcatttttt-atgaaaaagattcattcataatgataattat-ttaaaaatatattttcaatagaattaatcaaa 35280999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 28149004 - 28148948
Alignment:
Q  321 aagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaa 378  Q
    |||||| |||||||||| ||||||| |||||| | ||||||||||| |||||||||||    
T  28149004 aagattaatttataatcaaagttctttaaaaatt-tattttcaatataattaatcaaa 28148948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 399
Target Start/End: Complemental strand, 45443747 - 45443652
Alignment:
Q  308 ttttttgttgcaaaagattcatttataatcg---aagttctctaaaaa-atatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||||||| ||||||| ||||||    | ||||||||| || ||||||||||||| |||||||| ||| ||  ||||||| ||||||||    
T  45443747 ttttttgttgcaaaaaattcattcataatcatcaaggttctctaagaatatatattttcaatggaattaattaaaacaagttaaaaaaaaatatat 45443652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 233 - 380
Target Start/End: Complemental strand, 33345024 - 33344879
Alignment:
Q  233 cctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcattta 332  Q
    ||||||||| |||||||| ||||||||||| |||| || ||||||||||||||| | |||||||||||||| |||||||||||||||||| |||||||||    
T  33345024 cctaagatttttggtgccctggacgaaacaataaa-ttatgcccttttaattattcaaatatttttcttctagcattttttgttgcaaaatattcattta 33344926  T
Q  333 taatcgaagttctctaaaaaatatattttcaatagaattaatcaaagc 380  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  33344925 taatcaaagttatct-aaaaatatattttcaatagaattaatcaaagc 33344879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 254 - 379
Target Start/End: Original strand, 34329769 - 34329893
Alignment:
Q  254 gacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaa 353  Q
    ||||||||| ||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||| | ||||||||| |||||    
T  34329769 gacgaaacaataaaatcatgcccttttaattattctaatatttttcttcttgcattttttgttgcaaaagatctatttataagcaaagttctct-aaaaa 34329867  T
Q  354 tatattttcaatagaattaatcaaag 379  Q
    ||||||||||||||||||||||||||    
T  34329868 tatattttcaatagaattaatcaaag 34329893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 233 - 380
Target Start/End: Original strand, 35121874 - 35122018
Alignment:
Q  233 cctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcattta 332  Q
    ||||||||| |||||||| ||||||||||| |||| || ||||||||||||||| | |||||||||||||| ||||||| |||||||||| |||||||||    
T  35121874 cctaagatttttggtgccctggacgaaacaataaa-ttatgcccttttaattattcaaatatttttcttctagcatttt-tgttgcaaaatattcattta 35121971  T
Q  333 taatcgaagttctctaaaaaatatattttcaatagaattaatcaaagc 380  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  35121972 taatcaaagttatct-aaaaatatattttcaatagaattaatcaaagc 35122018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 256 - 399
Target Start/End: Original strand, 9815621 - 9815762
Alignment:
Q  256 cgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaata 355  Q
    ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| | ||||||||||||  |||| ||| |||||||    
T  9815621 cgaaacaataaaattgtgcccttttaattattctaatattattcttcttgcattttttgttacaaaa-actcatttataatcatagttttct-aaaaata 9815718  T
Q  356 tattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||| | |||||||||||  |||||||||||||||||    
T  9815719 tattttcaataaagttaatcaaagcgaattaaaaagaaatatat 9815762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 237 - 487
Target Start/End: Complemental strand, 12174520 - 12174259
Alignment:
Q  237 agattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataat 336  Q
    ||||| |||||| | ||||||||||| ||||||||||   ||||| ||||   |||||||| ||||||||| |||||||| ||||||||||||||| |||    
T  12174520 agatttttggtgtcatggacgaaacaataaaattgtgttgttttatttatttcaatattttccttcttgcagtttttgttacaaaagattcatttacaat 12174421  T
Q  337 cgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatata------------taactactaagtaaaaataataattt 424  Q
      |||||||||| |||||||||||| |||| ||||||||||| |  ||||||||||||||||            ||||||||||||||||||||||||||    
T  12174420 taaagttctcta-aaaatatatttttaatataattaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt 12174322  T
Q  425 cggtgcccctnnnnnnntggtgtcctgggctgctgcccctccatcccgccctcagggccaccc 487  Q
     |||||| ||       ||||| ||| || | ||||||||||  || ||||||||||||||||    
T  12174321 tggtgcctcttaaaaaatggtgccctaggttactgcccctcctgcctgccctcagggccaccc 12174259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 229 - 400
Target Start/End: Original strand, 34573109 - 34573277
Alignment:
Q  229 cggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattca 328  Q
    ||||| ||||||| ||| || | | ||| ||||| |||||||||||||||| || ||| | |||||||||||| ||||||| ||| ||  ||||||||||    
T  34573109 cggtcttaagatttttgatgtcctagacaaaacaataaaattgtgccctttaaaatattcaaatatttttctttttgcattctttttt--aaaagattca 34573206  T
Q  329 tttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatata 400  Q
    ||||||||| ||||||| ||||| |||||||||||||| ||||||||||| |  ||||||||||||||||||    
T  34573207 tttataatcaaagttctttaaaa-atatattttcaataaaattaatcaaaccgaattaaaaagaaatatata 34573277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 243 - 399
Target Start/End: Complemental strand, 31788006 - 31787854
Alignment:
Q  243 ttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagt 342  Q
    |||||| | ||||||||||| |||| |||| || ||||||||||   |||||||||  |||||||||||| ||||||||| |||||||||||||  ||||    
T  31788006 ttggtgtcctggacgaaacaataaa-ttgtacctttttaattatttcaatattttt--tcttgcatttttagttgcaaaatattcatttataattaaagt 31787910  T
Q  343 tctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    | |||| ||| |||||||||||||||||||||||||||  |||||||| ||||||||    
T  31787909 tatctacaaa-tatattttcaatagaattaatcaaagcgaattaaaaataaatatat 31787854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 262 - 378
Target Start/End: Original strand, 10668835 - 10668948
Alignment:
Q  262 agtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatatttt 361  Q
    |||||||||| | |||||||||||| |||||||||||||| ||| |||||||||  ||| |||||||||||||||| | ||| ||||||||  |||||||    
T  10668835 agtaaaattgcgtccttttaattattctaatatttttctttttggattttttgtctcaatagattcatttataatcaacgtt-tctaaaaa--atatttt 10668931  T
Q  362 caatagaattaatcaaa 378  Q
    ||||| |||||||||||    
T  10668932 caatataattaatcaaa 10668948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 255 - 360
Target Start/End: Complemental strand, 34969949 - 34969844
Alignment:
Q  255 acgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaat 354  Q
    ||||||||  ||||| |||||||||| | ||| | |||||||||||||||||||||||||||| |||||||||||||||| || |||||   ||||||||    
T  34969949 acgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcatttatagtcaaagtttcttaaaaaat 34969850  T
Q  355 atattt 360  Q
    ||||||    
T  34969849 atattt 34969844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 235 - 366
Target Start/End: Original strand, 4337556 - 4337686
Alignment:
Q  235 taagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttata 334  Q
    ||||||| |||||| | || || ||| | |||||||||||| |||||||||| ||||||  ||||||||| |||||||||||| |||||||| |||||||    
T  4337556 taagatttttggtgtcctgaacaaaataataaaattgtgccattttaattattctaatagctttcttcttacattttttgttgtaaaagatttatttata 4337655  T
Q  335 atcgaagttctctaaaaaatatattttcaata 366  Q
    ||| ||||| | ||||||||| ||| ||||||    
T  4337656 atcaaagtt-tttaaaaaatacattctcaata 4337686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 18991756 - 18991802
Alignment:
Q  290 aatatttttcttcttgcattttttgttgcaaaagattcatttataat 336  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  18991756 aatatttttcttcttgcattttttgttgcacaagattcatttataat 18991802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 394 - 487
Target Start/End: Original strand, 35122048 - 35122141
Alignment:
Q  394 atatataactactaagtaaaaataataatttcggtgcccctnnnnnnntggtgtcctgggctgctgcccctccatcccgccctcagggccaccc 487  Q
    ||||||||||||||||||||||||||||||| |||||||||       ||||| | || ||||| ||||||| | |||||||||||||| ||||    
T  35122048 atatataactactaagtaaaaataataattttggtgcccctaattaaatggtgccttgtgctgccgcccctcaagcccgccctcagggctaccc 35122141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 13229467 - 13229399
Alignment:
Q  265 aaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatc 337  Q
    |||||| ||||||||||||||| |||||    ||||||||| ||||||||||||| |||||||||||||||||    
T  13229467 aaaattatgcccttttaattattctaat----ttcttcttgtattttttgttgcacaagattcatttataatc 13229399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 32331529 - 32331634
Alignment:
Q  290 aatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaa 389  Q
    |||| ||||||||||  |||||||||||||||||||| ||||||||   |  |||||||||||| |||||||||| ||||||||| ||||   || ||||    
T  32331529 aatacttttcttcttatattttttgttgcaaaagatttatttataaataagattctctaaaaaa-atattttcaaaagaattaattaaagtgaataaaaa 32331627  T
Q  390 agaaata 396  Q
    |||||||    
T  32331628 agaaata 32331634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 390
Target Start/End: Complemental strand, 11274712 - 11274601
Alignment:
Q  277 ttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatca 376  Q
    |||||| ||| | ||| ||||| |||||| | |||||||||||||| ||||||| |||||| || ||||||| ||||||| || |||||| |||||||||    
T  11274712 ttttaactattccaatgttttttttcttgtactttttgttgcaaaatattcattcataatcaaaattctcta-aaaatat-ttgtcaatataattaatca 11274615  T
Q  377 aagcagattaaaaa 390  Q
    |||||  |||||||    
T  11274614 aagcaatttaaaaa 11274601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 226 - 398
Target Start/End: Original strand, 21954402 - 21954571
Alignment:
Q  226 ggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagat 325  Q
    |||||||||||||||| || ||||||| |||||| || |||| || || ||||  | |||| | ||  | ||| || ||| ||||||||||||||||||     
T  21954402 ggacggtcctaagattttttgtgccttagacgaatcaataaagttatgtcctt--agttattccaacgtctttgtttttgtattttttgttgcaaaagac 21954499  T
Q  326 tcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatata 398  Q
    | ||| |||||  | | ||| |||||||||| |||||||| |||||||||||| ||  |||||||||||||||    
T  21954500 ttattcataattaaggctct-taaaaaatattttttcaatggaattaatcaaaacaagttaaaaagaaatata 21954571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 434
Target Start/End: Complemental strand, 33344828 - 33344788
Alignment:
Q  394 atatataactactaagtaaaaataataatttcggtgcccct 434  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  33344828 atatataactactaagtaaaaataataattttggtgcccct 33344788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 374
Target Start/End: Original strand, 31153630 - 31153702
Alignment:
Q  301 tcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaat 374  Q
    ||||||||||||| |||||||||||||||| || ||| ||||| | | ||||| |||||||||||| |||||||    
T  31153630 tcttgcattttttattgcaaaagattcattcatgatcaaagttat-ttaaaaacatattttcaatataattaat 31153702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 31236880 - 31236976
Alignment:
Q  227 gacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaaga 324  Q
    ||||||||||||||| |  ||||| ||||||||  | |||||||||| | ||||||||||  | || | |||||||||||||||||| ||||||||||    
T  31236880 gacggtcctaagattttaagtgccctggacgaattaataaaattgtgtcattttaattatt-tgatgtctttcttcttgcattttttattgcaaaaga 31236976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 399
Target Start/End: Original strand, 34540848 - 34540950
Alignment:
Q  296 tttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaat 395  Q
    ||||||| || |||||||||||||||| ||| ||| |||||| ||| |   | ||||||||||||||||||||| |||||||| |   |||| |||||||    
T  34540848 tttcttcatgtattttttgttgcaaaaaatttattcataatc-aagattatttaaaaatatattttcaatagaactaatcaaaacgagttaataagaaat 34540946  T
Q  396 atat 399  Q
    ||||    
T  34540947 atat 34540950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 380
Target Start/End: Original strand, 9524773 - 9524906
Alignment:
Q  243 ttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagt 342  Q
    |||||| ||| ||||||||| ||||||| |    ||||||||||  ||||||||||  ||||| ||||||  ||| |||||||| |||||||||||||||    
T  9524773 ttggtggctttgacgaaacaataaaattattttattttaattattttaatattttt--tcttgtattttta-ttgtaaaagatttatttataatcgaagt 9524869  T
Q  343 tctctaaaaaatatattttcaatagaattaatcaaagc 380  Q
    ||  | ||||||||| ||| |||| ||||||| |||||    
T  9524870 tc-attaaaaatatagttttaatataattaattaaagc 9524906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 466
Target Start/End: Original strand, 10668980 - 10669047
Alignment:
Q  399 taactactaagtaaaaataataatttcggtgcccctnnnnnnntggtgtcctgggctgctgcccctcc 466  Q
    |||||| ||||||||||||||||||| |||||||||       ||||| ||||| |||||||||||||    
T  10668980 taactaataagtaaaaataataattttggtgcccctaaaaaaatggtgccctggactgctgcccctcc 10669047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 19638395 - 19638432
Alignment:
Q  294 tttttcttcttgcattttttgttgcaaaagattcattt 331  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  19638395 tttttcttcttacattttttgttgtaaaagattcattt 19638432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 401 - 478
Target Start/End: Complemental strand, 13229332 - 13229255
Alignment:
Q  401 actactaagtaaaaataataatttcggtgcccctnnnnnnntggtgtcctgggctgctgcccctccatcccgccctca 478  Q
    |||||||||||||||||||||||| |||||| ||       ||||| | |||||||| ||||||||  ||||||||||    
T  13229332 actactaagtaaaaataataattttggtgcctctaaaaaaatggtgccttgggctgccgcccctcctgcccgccctca 13229255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 222 - 399
Target Start/End: Complemental strand, 21828375 - 21828200
Alignment:
Q  222 gcagggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaa 321  Q
    |||||| ||||||||||||| |||||||||  | ||||| |  |||||||| ||||||||||||| |||||||||||| ||||  ||||||||||||| |    
T  21828375 gcagggccggtcctaagatttttggtgcctgaggcgaaagaaaaaaattgtacccttttaattattctaatatttttcgtcttttattttttgttgcaca 21828276  T
Q  322 agattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||||||||||||| ||||||||||||||   |||||||||||| |||||||||| ||  ||||||||||||||||    
T  21828275 agattcatttataatcaaagttctctaaaaa--gtattttcaatagcattaatcaaaacaagttaaaaagaaatatat 21828200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 224 - 399
Target Start/End: Complemental strand, 3351292 - 3351119
Alignment:
Q  224 agggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaag 323  Q
    |||||||| ||||||||| ||||| || || || ||||| |||| ||||  ||||||||||||   |||||||||||||||||||||||||||| ||||     
T  3351292 agggacggccctaagatttttggtaccctgaacaaaacaataaa-ttgtttccttttaattattaaaatatttttcttcttgcattttttgttgtaaaat 3351194  T
Q  324 attcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  3351193 attcatttataatcaaagttatct-aaaaatataatttcaatagaattaatcaaagcgaattaaaaagaaatatat 3351119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 231 - 400
Target Start/End: Complemental strand, 12178010 - 12177846
Alignment:
Q  231 gtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatt 330  Q
    ||||||||| | |||||||| |||||||||   |||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||     
T  12178010 gtcctaagagttttggtgccctggacgaaa---taaaattgtgccctattaattattctaatagttttcttcttacattttttgttgcaaaagattcatc 12177914  T
Q  331 tataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatata 400  Q
    ||||||  ||||| ||| |||||||||||||||||| ||||||| ||| |  |||||||||| |||||||    
T  12177913 tataat-aaagttttct-aaaaatatattttcaataaaattaattaaaccgaattaaaaagatatatata 12177846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 232 - 400
Target Start/End: Complemental strand, 26448578 - 26448410
Alignment:
Q  232 tcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatc-ctaatatttttcttcttgcattttttgttgcaaaagattcatt 330  Q
    ||||||||||  ||||||||| || |||| | ||||||| || | ||||||||||  | ||||||||| |||||||||||||||||||||||||||||||    
T  26448578 tcctaagatttctggtgcctttgatgaaataataaaattttgtctttttaattatttcaaatattttttttcttgcattttttgttgcaaaagattcatt 26448479  T
Q  331 tataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatata 400  Q
    ||| ||| |||||||||| |||||||| ||| | |||||||||||||||   ||||||||||||||||||    
T  26448478 tattatcaaagttctcta-aaaatatacttttagtagaattaatcaaagtgaattaaaaagaaatatata 26448410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 234 - 373
Target Start/End: Original strand, 40351695 - 40351831
Alignment:
Q  234 ctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttat 333  Q
    |||||||| |||||| ||||||||||||| ||||||| | ||||||||||||| |||  |||||| ||||||||||||||||||  ||||||| ||||||    
T  40351695 ctaagatttttggtgtcttggacgaaacaataaaattcttcccttttaattattcta--attttttttcttgcattttttgttgataaagatttatttat 40351792  T
Q  334 aatcgaagttctctaaaaaatatattttcaatagaattaa 373  Q
    |||| ||||||| | |||||||||||||||||||||||||    
T  40351793 aatcaaagttct-ttaaaaatatattttcaatagaattaa 40351831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 278 - 399
Target Start/End: Complemental strand, 35812774 - 35812653
Alignment:
Q  278 tttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattt-tcaatagaattaatca 376  Q
    ||||||||| | |||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||| ||||||||||| ||||    
T  35812774 tttaattattccaatattattcttcttgcattttttgttgcaaaatattcatttataatcaaagttatct-aaaaatatatttatcaatagaattgatca 35812676  T
Q  377 aagcagattaaaaagaaatatat 399  Q
    ||||  |||||||||||||||||    
T  35812675 aagcgaattaaaaagaaatatat 35812653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 275 - 399
Target Start/End: Original strand, 3940619 - 3940741
Alignment:
Q  275 ccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaat 374  Q
    |||||||||||| |||||||||||||| ||| |||||| |||||| |||||| |||||||||| ||||||| ||||||  ||||||| ||||||||||||    
T  3940619 ccttttaattattctaatatttttctttttgtattttt-gttgcacaagatttatttataatcaaagttctttaaaaag-atattttaaatagaattaat 3940716  T
Q  375 caaagcagattaaaaagaaatatat 399  Q
    ||||| | |||||||||||||||||    
T  3940717 caaagtaaattaaaaagaaatatat 3940741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 255 - 378
Target Start/End: Original strand, 26914291 - 26914412
Alignment:
Q  255 acgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaat 354  Q
    |||||||| |||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||  | ||| | | ||||||    
T  26914291 acgaaacaataaaat-gtgtccttttaattattttaatatttttcttcttgcattttttgttgcaaaatattcatttataattaacgttat-ttaaaaat 26914388  T
Q  355 atattttcaatagaattaatcaaa 378  Q
    |||||||||||| |||||||||||    
T  26914389 atattttcaatataattaatcaaa 26914412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 21129326 - 21129417
Alignment:
Q  307 attttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||| |||||||||||| |||||||||| || |||||||||||| |||||||||||||||||||||||| || |||||||||||||||||    
T  21129326 attttttattgcaaaagattaatttataatcaaaattctctaaaaaa-atattttcaatagaattaatcaaaccaaattaaaaagaaatatat 21129417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 251 - 399
Target Start/End: Original strand, 42335888 - 42336035
Alignment:
Q  251 ttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaa 350  Q
    |||||||||| | ||||||| || | ||||||| ||  ||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||| | | ||    
T  42335888 ttggacgaaataataaaattatgtctttttaatcattttaatagtttttttcttacattttttgttgcaaaagattcatttataatcaaagtt-ttttaa 42335986  T
Q  351 aaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||||| || ||||||| ||| |  |||||||||||||||||    
T  42335987 aaatatattttcactataattaattaaaccgaattaaaaagaaatatat 42336035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 233 - 378
Target Start/End: Original strand, 15133233 - 15133376
Alignment:
Q  233 cctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcattta 332  Q
    ||||||||| ||| |||  ||||||||||  |||| || |||| |||||||||| | ||||||||| ||||| |||||||||||| |||| |||||||||    
T  15133233 cctaagatttttgttgcgctggacgaaactataaa-ttatgcctttttaattattcaaatattttttttcttacattttttgttgtaaaatattcattta 15133331  T
Q  333 taatcgaagttctctaaaaaatatattttcaatagaattaatcaaa 378  Q
    ||||| ||||| ||| |||||||| |||| ||||||||||||||||    
T  15133332 taatcaaagttatct-aaaaatattttttaaatagaattaatcaaa 15133376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 264 - 378
Target Start/End: Original strand, 22318620 - 22318733
Alignment:
Q  264 taaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttca 363  Q
    |||||||||||||||||| ||||   |||| |||| ||||| ||||||||||||||||||||| |||||||||  ||||| ||| ||||||||||| |||    
T  22318620 taaaattgtgcccttttagttatttcaatagtttttttcttacattttttgttgcaaaagatttatttataattaaagttttct-aaaaatatattctca 22318718  T
Q  364 atagaattaatcaaa 378  Q
    ||| |||||||||||    
T  22318719 atataattaatcaaa 22318733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 266 - 399
Target Start/End: Complemental strand, 26912497 - 26912366
Alignment:
Q  266 aaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaat 365  Q
    |||||||  |||||||||||| |||||||| || |||||||||||| |||  ||||  |||||||| ||||| ||||| |||||||| ||||| || |||    
T  26912497 aaattgtatccttttaattattctaatattatttttcttgcattttatgtgacaaat-attcatttgtaatcaaagttatctaaaaa-tatatcttgaat 26912400  T
Q  366 agaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||||||||||||  |||||||||||||||||    
T  26912399 agaattaatcaaagcgaattaaaaagaaatatat 26912366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 245 - 391
Target Start/End: Original strand, 48008521 - 48008661
Alignment:
Q  245 ggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttc 344  Q
    |||||||||||| ||||| |||||| |||  |||||||||||  ||||||||||||| |   ||||||||||| ||| ||||| ||||||||| ||||||    
T  48008521 ggtgccttggacaaaacaataaaat-gtgttcttttaattattttaatatttttcttgt---attttttgttggaaatgattcctttataatcaaagttc 48008616  T
Q  345 tctaaaaaatatattttcaatagaattaatcaaagcagattaaaaag 391  Q
    |||  ||||||| |||| ||||||||||||||||| | |||||||||    
T  48008617 tct--aaaatatttttttaatagaattaatcaaagtaaattaaaaag 48008661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 277 - 399
Target Start/End: Original strand, 9429306 - 9429426
Alignment:
Q  277 ttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatca 376  Q
    ||||||||||  ||||||||| ||||| ||||||  |||||||||| ||| |||||||||||||||||| |||| |  ||||||||||||||||||||||    
T  9429306 ttttaattattttaatattttacttctagcatttgctgttgcaaaaaatttatttataatcgaagttctttaaata--atattttcaatagaattaatca 9429403  T
Q  377 aagc-agattaaaaagaaatatat 399  Q
    || | ||| |||||||||||||||    
T  9429404 aaacgaga-taaaaagaaatatat 9429426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 13431651 - 13431754
Alignment:
Q  295 ttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaa 394  Q
    |||| |||||| |||||||||||| ||||||||||| |||||| | ||||||  | |||||||||||||||||||||| |||||  | || ||||| |||    
T  13431651 tttttttcttgtattttttgttgctaaagattcattcataatcaaggttctc-cacaaatatattttcaatagaattattcaaaaaaaatcaaaaataaa 13431749  T
Q  395 tatat 399  Q
    |||||    
T  13431750 tatat 13431754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 30095739 - 30095810
Alignment:
Q  308 ttttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagc 380  Q
    |||||| |||||||| |||||||||||||| ||||| ||| |||||||| ||||||||||||||||| |||||    
T  30095739 ttttttcttgcaaaatattcatttataatcaaagttatct-aaaaatattttttcaatagaattaataaaagc 30095810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 235 - 399
Target Start/End: Original strand, 33480418 - 33480580
Alignment:
Q  235 taagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttata 334  Q
    ||||||| || |||||||| |||||  | ||||||| || ||||||||||||   ||| | |||||||||| ||||||| ||||| |||||| ||| |||    
T  33480418 taagatttttagtgccttgaacgaattaataaaattatgtccttttaattatttgaatgtctttcttcttgtattttttattgcagaagattaattcata 33480517  T
Q  335 atcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||  | ||||| | ||||| ||||||| |||| ||||||||||||||  ||| ||||||||||||    
T  33480518 at-aaggttct-ttaaaaacatatttttaatataattaatcaaagcaatttagaaagaaatatat 33480580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 402 - 487
Target Start/End: Original strand, 15134556 - 15134641
Alignment:
Q  402 ctactaagtaaaaataataatttcggtgcccctnnnnnnntggtgtcctgggctgctgcccctccatcccgccctcagggccaccc 487  Q
    ||||||||||||||||||||||| |||||||||       || || |||||||||| ||||||  | |||||||||||||||||||    
T  15134556 ctactaagtaaaaataataattttggtgcccctaaaaatttgatgccctgggctgccgccccttaagcccgccctcagggccaccc 15134641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 37996617 - 37996569
Alignment:
Q  289 taatatttttcttcttgcattttttgttgcaaaagattcatttataatc 337  Q
    ||||||||| || ||||||||||||||| ||||||||||||||||||||    
T  37996617 taatattttcctccttgcattttttgttacaaaagattcatttataatc 37996569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 36066252 - 36066176
Alignment:
Q  296 tttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaat 374  Q
    |||||||||| |||||| |||| |||||||| ||| |||||| || ||||||| ||||||||||||||||| |||||||    
T  36066252 tttcttcttgtattttt-gttgtaaaagatttattcataatcaaaattctcta-aaaatatattttcaatacaattaat 36066176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 264 - 423
Target Start/End: Original strand, 49164733 - 49164892
Alignment:
Q  264 taaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttca 363  Q
    |||||||||| | ||||||||||   ||| | |||||||||||||||| |  ||||||||||||||| ||||   |  |||||||||||  ||||||| |    
T  49164733 taaaattgtgtcattttaattatgtaaatgtctttcttcttgcattttattctgcaaaagattcattcataaataagattctctaaaaa--atattttta 49164830  T
Q  364 atagaattaatcaaagcagattaaaaagaaata-ta-taactactaagtaaaaataataatt 423  Q
    ||  ||||||||||||   |||||| | | ||| || |||||||||||||||||||||||||    
T  49164831 attaaattaatcaaagagaattaaatatatatactactaactactaagtaaaaataataatt 49164892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 398 - 464
Target Start/End: Original strand, 30095861 - 30095927
Alignment:
Q  398 ataactactaagtaaaaataataatttcggtgcccctnnnnnnntggtgtcctgggctgctgcccct 464  Q
    ||||||||||||||||||||||||||| |||||||||       ||||| |||||||||| ||||||    
T  30095861 ataactactaagtaaaaataataattttggtgcccctaaaaaaatggtgccctgggctgccgcccct 30095927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 399
Target Start/End: Original strand, 48393248 - 48393372
Alignment:
Q  276 cttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaa-atatattttcaatagaattaat 374  Q
    |||||||||||   ||| | |||||||||  |||||||||||  ||||||| |||||||||| || || |||||||| ||||||||| || |||| ||||    
T  48393248 cttttaattatttaaatgtctttcttcttatattttttgttgtgaaagatttatttataatcaaaattatctaaaaatatatatttttaacagaactaat 48393347  T
Q  375 caaagcagattaaaaagaaatatat 399  Q
    | || ||  ||||||||||| ||||    
T  48393348 ctaaacaagttaaaaagaaaaatat 48393372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 434
Target Start/End: Original strand, 21292832 - 21292867
Alignment:
Q  399 taactactaagtaaaaataataatttcggtgcccct 434  Q
    |||||||||||||||||||||||||| |||||||||    
T  21292832 taactactaagtaaaaataataattttggtgcccct 21292867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 31799748 - 31799670
Alignment:
Q  229 cggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgca 307  Q
    ||||||||||||| || ||| | | ||||||||| ||||||| ||| || |||||||| ||||| | ||||||||||||    
T  31799748 cggtcctaagatttttcgtgtcctagacgaaacaataaaattttgctctcttaattattctaatctgtttcttcttgca 31799670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 432
Target Start/End: Complemental strand, 37996536 - 37996503
Alignment:
Q  399 taactactaagtaaaaataataatttcggtgccc 432  Q
    |||||||||||||||||||||||||| |||||||    
T  37996536 taactactaagtaaaaataataattttggtgccc 37996503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 223 - 487
Target Start/End: Complemental strand, 23870259 - 23869986
Alignment:
Q  223 cagggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaa 322  Q
    ||||| ||||||||||||| |||||||||||| ||||||| |||| |||  || ||||||||||   ||| ||||| ||||||| |||||||||||||||    
T  23870259 cagggccggtcctaagatttttggtgccttggccgaaacaataaa-ttgaacctttttaattattacaattttttt-ttcttgctttttttgttgcaaaa 23870162  T
Q  323 gattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatata------------taactactaagt 410  Q
     |||||||||||||| ||||| ||| |||||||||||||||||||||||||||||| |  |||||||| | |||||            ||||||||||||    
T  23870161 tattcatttataatcaaagttatct-aaaaatatattttcaatagaattaatcaaaacgaattaaaaaaatatatatctatatagtactaactactaagt 23870063  T
Q  411 aaaaataataatttcggtgcccctnnnnnnntggtgtcctgggctgctgcccctccatcccgccctcagggccaccc 487  Q
    |||||||||||||| |||||||||       ||||| |||||||||  ||||||| | |||||||||||||||||||    
T  23870062 aaaaataataattttggtgcccctaaaaaagtggtgccctgggctgtcgcccctcgagcccgccctcagggccaccc 23869986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 234 - 399
Target Start/End: Original strand, 43515782 - 43515947
Alignment:
Q  234 ctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgca-ttttttgttgcaaaagattcattta 332  Q
    |||||||| |||||| | ||| ||||||| |||||||||||||||||| |||| |||||| |||||||||| || |||||||||||||||||||||||||    
T  43515782 ctaagatttttggtgtcctgggcgaaacaataaaattgtgcccttttagttattctaatagttttcttcttacatttttttgttgcaaaagattcattta 43515881  T
Q  333 taatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||| ||||| ||| || |||||||| | |||| ||||||||||| || |||||||||| ||||||    
T  43515882 taatcaaagttttct-aacaatatattcttaatataattaatcaaaccaaattaaaaagatatatat 43515947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 230 - 399
Target Start/End: Complemental strand, 12320611 - 12320443
Alignment:
Q  230 ggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcat 329  Q
    ||||| |||||| |||||| | || || ||||| ||||||||||| ||||||||||| | |||| |||||||||| ||||||||||||||||| ||||||    
T  12320611 ggtccgaagatttttggtgtcctgaacaaaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcat 12320512  T
Q  330 ttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||||||||||| | ||||||| ||||| |||||| ||||||||||| |  |||||||||| ||||||    
T  12320511 ttataatcgaagttttttaaaaaa-atattctcaatataattaatcaaaccgaattaaaaagatatatat 12320443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 229 - 424
Target Start/End: Original strand, 35372031 - 35372230
Alignment:
Q  229 cggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattca 328  Q
    ||||| ||| ||| |||||||| ||||| ||||| |||| ||||||| |||||| ||| ||||||||||||||||| ||||||||||||||  ||||||     
T  35372031 cggtcataaaatttttggtgccctggacaaaacaataaagttgtgccattttaaatattctaatatttttcttcttacattttttgttgcatgagattcg 35372130  T
Q  329 tttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaa-atata----taactactaagtaaaaataataatt 423  Q
    ||||||||  ||| ||||| |||||||||||||||||| |||||||||||    |||||||| || |||||    |||||||||||||||||||||||||    
T  35372131 tttataattaaagctctct-aaaaatatattttcaatataattaatcaaactgaattaaaaaaaatatatagtcctaactactaagtaaaaataataatt 35372229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 223 - 399
Target Start/End: Original strand, 3643060 - 3643235
Alignment:
Q  223 cagggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaa 322  Q
    ||||| ||||||||| | |  ||||||| ||  ||||||| |||||||||| | |||||||||| | |||||||||||||||| ||||||||||||| ||    
T  3643060 cagggccggtcctaaaacttatggtgccctgagcgaaacaataaaattgtgtcattttaattattccaatatttttcttcttggattttttgttgcacaa 3643159  T
Q  323 gattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
     |||||||||| ||| ||| ||| | |||||||  ||||||||| |||||||||| ||| |||||||||||||||||    
T  3643160 aattcatttattatcaaagctct-ttaaaaataacttttcaatataattaatcaatgcaaattaaaaagaaatatat 3643235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 236 - 434
Target Start/End: Complemental strand, 5627691 - 5627488
Alignment:
Q  236 aagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataa 335  Q
    |||||| ||| |||| ||||||||||| |||| |  ||||||||||||||| | |||||||||||| |||||||||||||||||||| ||||||||||||    
T  5627691 aagatttttgatgccctggacgaaacaataaa-tcatgcccttttaattattcaaatatttttcttattgcattttttgttgcaaaatattcatttataa 5627593  T
Q  336 tcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaa-atata------taactactaagtaaaaataataatttcggt 428  Q
    ||  |||| | | ||||| || ||||||||| ||||||||||| |  ||||||||||| |||||      ||||||| | |||||||||||||||| |||    
T  5627592 tcagagttatat-aaaaacattttttcaatataattaatcaaaacgaattaaaaagaatatatatattactaactaccatgtaaaaataataattttggt 5627494  T
Q  429 gcccct 434  Q
    ||||||    
T  5627493 gcccct 5627488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 36071557 - 36071647
Alignment:
Q  308 ttttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||||||    
T  36071557 ttttttgttgcataagattcatttataatcaaagttctctaaaa-atatattttcaattgaattaatcaaagaaaattaaaaagaaatatat 36071647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 259 - 399
Target Start/End: Complemental strand, 7102322 - 7102182
Alignment:
Q  259 aacagtaaaattgtgcccttttaattat--cctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatat 356  Q
    |||| ||||||||| ||| |||||||||  || ||| |||||||||||| | ||||||||||| ||||||||||||||||  |||||||||| ||||| |    
T  7102322 aacaataaaattgtacccatttaattattccccaatgtttttcttcttgtactttttgttgcacaagattcatttataataaaagttctcta-aaaatgt 7102224  T
Q  357 attttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||| |||||||||| || |||||||| ||||||||    
T  7102223 attttcaataggattaatcaaaacaaattaaaaa-aaatatat 7102182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 265 - 378
Target Start/End: Original strand, 55147627 - 55147739
Alignment:
Q  265 aaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaa 364  Q
    |||||||||| ||||||||||| |||||||||||| | ||  ||||||||||| | ||||||||||||||||| ||||||||| ||||| | ||||||||    
T  55147627 aaaattgtgctcttttaattattctaatatttttcatattctattttttgttgtacaagattcatttataatcaaagttctct-aaaaagacattttcaa 55147725  T
Q  365 tagaattaatcaaa 378  Q
    || |||||||||||    
T  55147726 taaaattaatcaaa 55147739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 251 - 378
Target Start/End: Complemental strand, 7853480 - 7853355
Alignment:
Q  251 ttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaa 350  Q
    |||||||||||| ||||||||| |||||||||||||   |||| |||||||||| || ||||| |||||||  |||||||||||||| ||||| ||| ||    
T  7853480 ttggacgaaacaataaaattgtacccttttaattatttcaatagttttcttcttaca-tttttattgcaaagaattcatttataatcaaagttttct-aa 7853383  T
Q  351 aaatatattttcaatagaattaatcaaa 378  Q
    ||||||||||||||||  ||||||||||    
T  7853382 aaatatattttcaatatcattaatcaaa 7853355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 229 - 399
Target Start/End: Complemental strand, 2114047 - 2113878
Alignment:
Q  229 cggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattca 328  Q
    ||||||||||||| || ||||| |   |||| || ||||| | || ||||||||||||   ||| | |||||||||| ||||||| |||||||||||| |    
T  2114047 cggtcctaagatttttagtgccctaagcgaatcaataaaactatgtccttttaattatttgaatgtctttcttcttgtattttttattgcaaaagattaa 2113948  T
Q  329 tttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    || |||||| | ||||| ||||||  |||||||||||| ||||||||||||||  ||| ||||||||||||    
T  2113947 ttcataatcaaggttctttaaaaac-atattttcaatataattaatcaaagcaatttagaaagaaatatat 2113878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 272 - 400
Target Start/End: Original strand, 20811471 - 20811598
Alignment:
Q  272 tgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaatt 371  Q
    |||| |||||||||| | ||| |||| |||||| ||||||| |||||||||  |||| | |||||| || |||| ||||| |||||||||||||| || |    
T  20811471 tgccattttaattattcgaatgttttgcttctttcatttttcgttgcaaaaacttcactcataatcaaaattctttaaaa-atatattttcaatataaat 20811569  T
Q  372 aatcaaagcagattaaaaagaaatatata 400  Q
    ||| ||||||  ||||||| |||||||||    
T  20811570 aattaaagcaagttaaaaacaaatatata 20811598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 292 - 399
Target Start/End: Complemental strand, 29118617 - 29118510
Alignment:
Q  292 tatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaa-tcaaagcagattaaaaa 390  Q
    ||||||| || || |||||||| |||||||| ||||||| |||||| ||||||| ||||||  |||||||||||| |||||| | ||||||  |||||||    
T  29118617 tatttttttttttacattttttattgcaaaatattcattcataatcaaagttctttaaaaac-atattttcaatataattaattaaaagcaatttaaaaa 29118519  T
Q  391 gaaatatat 399  Q
    |||||||||    
T  29118518 gaaatatat 29118510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 40807834 - 40807914
Alignment:
Q  296 tttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaa 377  Q
    |||||| ||||||||||||||| | |||||||||| |||||| | ||| ||| ||||| ||||||| |||||||||||||||    
T  40807834 tttctttttgcattttttgttggataagattcattcataatcaatgttatct-aaaaacatatttttaatagaattaatcaa 40807914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 296 - 400
Target Start/End: Original strand, 4596447 - 4596550
Alignment:
Q  296 tttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaat 395  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||| | | |  |  |||||||||||||| ||| ||||||||   |||||||| ||||    
T  4596447 tttctttttgcattttttgttgcaaaagattcattcataatc-aaggtttttctagtatatattttcaataaaatcaatcaaagtgaattaaaaacaaat 4596545  T
Q  396 atata 400  Q
    |||||    
T  4596546 atata 4596550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 48653828 - 48653769
Alignment:
Q  277 ttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataat 336  Q
    |||||||||| | ||| | ||||||||||||| ||||||||||||||||||||| |||||    
T  48653828 ttttaattattcgaatgtctttcttcttgcatgttttgttgcaaaagattcattcataat 48653769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 399
Target Start/End: Original strand, 15986910 - 15986960
Alignment:
Q  349 aaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||| ||||||||||||||||||||||||| || |||||||| ||||||||    
T  15986910 aaaattatattttcaatagaattaatcaaaacacattaaaaataaatatat 15986960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 395
Target Start/End: Original strand, 29369937 - 29369983
Alignment:
Q  349 aaaaatatattttcaatagaattaatcaaagcagattaaaaagaaat 395  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||    
T  29369937 aaaaatatattttcaatagaattaatcaaaacaaattaaaaataaat 29369983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 7745943 - 7746008
Alignment:
Q  272 tgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaa-gattcatttataat 336  Q
    |||| |||||||||| | ||||| |||||||||||||||||||||| ||||  |||||||||||||    
T  7745943 tgcctttttaattattcaaatatctttcttcttgcattttttgttggaaaataattcatttataat 7746008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 32554527 - 32554574
Alignment:
Q  220 atgcagggacggtcctaagattcttggtgccttggacgaaacagtaaa 267  Q
    |||||||| ||||||||||||| ||||||||||||| |||||| ||||    
T  32554527 atgcagggccggtcctaagatttttggtgccttggaagaaacaataaa 32554574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 329
Target Start/End: Complemental strand, 37226441 - 37226342
Alignment:
Q  230 ggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcat 329  Q
    |||| ||||||  |||||| |||||||||| || |||||| |||  |||||||||||   ||| | ||| || || ||||||||||||||||||||||||    
T  37226441 ggtcttaagatctttggtgtcttggacgaatcaataaaatcgtgttcttttaattatttgaatgtcttttttatttcattttttgttgcaaaagattcat 37226342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 8733031 - 8733093
Alignment:
Q  264 taaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagatt 326  Q
    |||| ||||| | |||| ||||| | ||| |||||||||| ||||||||||||||||||||||    
T  8733031 taaagttgtggcatttttattattcaaatgtttttcttctagcattttttgttgcaaaagatt 8733093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 6137808 - 6137756
Alignment:
Q  313 tgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaata 366  Q
    ||||||| ||||||||||| ||||| ||||||||| ||| ||||||||||||||    
T  6137808 tgttgcataagattcatttctaatcaaagttctct-aaatatatattttcaata 6137756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 7540403 - 7540474
Alignment:
Q  307 attttttgttgcaaaagattcatttataatcgaagttctctaaaaaata-tattttcaatagaattaatcaaa 378  Q
    |||||||||||||||||||||||| ||||   ||| | ||||||||| | |||||| ||||||||||||||||    
T  7540403 attttttgttgcaaaagattcattcataa-ataaggtttctaaaaaaaattatttttaatagaattaatcaaa 7540474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 40807924 - 40807960
Alignment:
Q  363 aatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||||||||||  |||||||||||||||||    
T  40807924 aatagaattaatcaaagcgaattaaaaagaaatatat 40807960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 363 - 399
Target Start/End: Original strand, 55147880 - 55147916
Alignment:
Q  363 aatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||||||||||||| || |||||||||||||||||    
T  55147880 aatagaattaatcaaaacaaattaaaaagaaatatat 55147916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 442 - 486
Target Start/End: Complemental strand, 55236264 - 55236220
Alignment:
Q  442 tggtgtcctgggctgctgcccctccatcccgccctcagggccacc 486  Q
    ||||||||||||||||||||||||   |||||||||| |||||||    
T  55236264 tggtgtcctgggctgctgcccctcgcgcccgccctcaaggccacc 55236220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 223 - 399
Target Start/End: Complemental strand, 18626868 - 18626697
Alignment:
Q  223 cagggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaa 322  Q
    ||||| |||||||||| || |||||||| | | ||||||| |||||||||| ||||||||||||  |||||||||    |||| ||||||||||||| ||    
T  18626868 cagggccggtcctaagttttttggtgccataggcgaaacaataaaattgtgtccttttaattattttaatatttt----cttgtattttttgttgcacaa 18626773  T
Q  323 gattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||||||| |||||||| ||||||||| | ||||||||||||||||||| || | |||||||||||||||    
T  18626772 gattcatttataatcaaagttctc-aaaaaatatttcttcaatagaattaatcaaaacaaagtaaaaagaaatatat 18626697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 264 - 399
Target Start/End: Original strand, 32257641 - 32257775
Alignment:
Q  264 taaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttca 363  Q
    ||||| ||||||||||||||||| | ||| ||||| ||||||||||||||||| || || |||||||||||||| ||||||||| |||| ||||||||||    
T  32257641 taaaactgtgcccttttaattattccaatttttttgttcttgcattttttgttacacaaaattcatttataatcaaagttctct-aaaagtatattttca 32257739  T
Q  364 atagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||| |||||||||||||| |||||||| ||||||||    
T  32257740 ataaaattaatcaaagcaaattaaaaaaaaatatat 32257775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 223 - 400
Target Start/End: Complemental strand, 20870842 - 20870668
Alignment:
Q  223 cagggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaa 322  Q
    ||||| ||||||||  ||| || ||||| ||||||||||| |||| |||| || ||||||||||  |||||||||| |||||||||||||||||||| ||    
T  20870842 cagggtcggtcctagaatttttagtgccctggacgaaacaataaa-ttgtaccattttaattattttaatattttt-ttcttgcattttttgttgcagaa 20870745  T
Q  323 gattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatata 400  Q
     |||||||||||||| ||||| ||| ||||||||||| |||||| ||||||||||||   ||||||||||||||||||    
T  20870744 tattcatttataatcaaagttatct-aaaaatatattatcaataaaattaatcaaagggaattaaaaagaaatatata 20870668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 223 - 399
Target Start/End: Original strand, 3193437 - 3193612
Alignment:
Q  223 cagggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaa 322  Q
    ||||| ||||||||||||| || | ||| ||| ||||  | ||||||| || ||||||||||||   ||| | |||||||||||||||||| ||||||||    
T  3193437 cagggccggtcctaagatttttagcgccctgggcgaattaataaaattatgtccttttaattatttgaatgtctttcttcttgcattttttattgcaaaa 3193536  T
Q  323 gattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||||| |||||| ||||||| | ||||| |||||||||||| ||||| ||||||||  ||||||||||||||||    
T  3193537 gattcattcataatcaaagttct-ttaaaaacatattttcaatataattattcaaagcaatttaaaaagaaatatat 3193612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 233 - 399
Target Start/End: Original strand, 7886539 - 7886702
Alignment:
Q  233 cctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcattta 332  Q
    ||||||||| |||||| |  || ||||||| |||| ||||||| |||||||||| | || |||||||||||| | ||||||||| ||||| ||||| |||    
T  7886539 cctaagatttttggtgtcccgggcgaaacaataaa-ttgtgccattttaattattcaaacatttttcttcttac-ttttttgttccaaaatattcactta 7886636  T
Q  333 taatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||| ||||| |||||| | |||||||||||||||||||||||||||  |||||||||||| ||||    
T  7886637 taatcaaagttatctaaaca-tatattttcaatagaattaatcaaagcgaattaaaaagaaacatat 7886702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 264 - 399
Target Start/End: Original strand, 16570452 - 16570586
Alignment:
Q  264 taaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttca 363  Q
    ||||||| |||| || |||||||   ||||||||| || ||||||||| ||| |||||||||| |||| ||||| ||||||||| ||||||||||||| |    
T  16570452 taaaattatgccattctaattatttcaatatttttgtttttgcattttctgtggcaaaagattaatttttaatcaaagttctct-aaaaatatattttta 16570550  T
Q  364 atagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||||||||   |||||||||||||||||    
T  16570551 atagaattaatcaaagtgaattaaaaagaaatatat 16570586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 308 - 399
Target Start/End: Complemental strand, 502931 - 502843
Alignment:
Q  308 ttttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||| |||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||    
T  502931 tttttttttgcaaaagattcattcataatcaaagttctcta-aaaatatattttcaatagaattaatcaaag-ag-ttaaaaagaaatatat 502843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 300 - 390
Target Start/End: Original strand, 12263638 - 12263727
Alignment:
Q  300 ttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaa 390  Q
    ||||||||| |||| ||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||  ||||||||    
T  12263638 ttcttgcatcttttattgcaaaagattcatctataatcaaagttctttaaaa-atatattttcaatagaattaatcaaagcgaattaaaaa 12263727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 237 - 399
Target Start/End: Original strand, 25034282 - 25034442
Alignment:
Q  237 agattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataat 336  Q
    ||||| |||||| | ||||||||||| ||||||| || | |||||||||    |||| |||||||||| ||||||||||||||||| |||||||||| ||    
T  25034282 agatttttggtgtcctggacgaaacaataaaattatgtcattttaattacttcaatagttttcttcttacattttttgttgcaaaaaattcatttattat 25034381  T
Q  337 cgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
      ||||| ||| ||||||| ||||| |||| ||||||||||| || ||| |||||||||||||    
T  25034382 taaagttttct-aaaaatacatttttaatacaattaatcaaacca-atttaaaagaaatatat 25034442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 223 - 378
Target Start/End: Original strand, 10325515 - 10325672
Alignment:
Q  223 cagggacggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcatttt---ttgttgca 319  Q
    ||||| |||| |||||||  |||||| | ||||||||||| ||||||||||||||||||||||| |  ||| ||||  || | | ||||   ||||||||    
T  10325515 cagggtcggttctaagatatttggtgtcctggacgaaacaataaaattgtgcccttttaattattccgatagttttaatcctacttttttttttgttgca 10325614  T
Q  320 aaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaa 378  Q
    |||||||||||||| ||| ||||| ||| |||||| |||| |||||| |||||||||||    
T  10325615 aaagattcatttatgatcaaagttttct-aaaaatgtattctcaatataattaatcaaa 10325672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 276 - 399
Target Start/End: Original strand, 3596880 - 3597002
Alignment:
Q  276 cttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatc 375  Q
    ||||||||||| |||||| |||| || ||  ||||||| || ||||||||||| ||||| || || || | ||||| ||||||||| |||||||||||||    
T  3596880 cttttaattattctaatacttttatttttatattttttttttcaaaagattcacttatattcaaatttttataaaa-atatatttttaatagaattaatc 3596978  T
Q  376 aaagcagattaaaaagaaatatat 399  Q
    ||| |  |||||||||||||||||    
T  3596979 aaaacgaattaaaaagaaatatat 3597002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 366
Target Start/End: Complemental strand, 39542581 - 39542481
Alignment:
Q  264 taaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttca 363  Q
    |||||||||||||||||||||||   ||| | |||||||||||||||||| ||| ||||| || ||| |||||| ||||||| | ||||| |||||||||    
T  39542581 taaaattgtgcccttttaattatatgaatgtctttcttcttgcattttttattgtaaaag-tttattcataatcaaagttct-ttaaaaacatattttca 39542484  T
Q  364 ata 366  Q
    |||    
T  39542483 ata 39542481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 20017649 - 20017605
Alignment:
Q  254 gacgaaacagtaaaattgtgcccttttaattatcctaatattttt 298  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||    
T  20017649 gacgaaacaataaaattgtgcccttttaattattctaatattttt 20017605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 293 - 378
Target Start/End: Original strand, 37147841 - 37147925
Alignment:
Q  293 atttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaa 378  Q
    |||||| |||||| ||||||| ||| |||| |||||||||||||  ||| | | | |||||||||||||||||| |||||||||||    
T  37147841 attttttttcttgtattttttcttgtaaaatattcatttataat-taaggttttttaaaaatatattttcaatacaattaatcaaa 37147925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 434
Target Start/End: Original strand, 7887289 - 7887324
Alignment:
Q  399 taactactaagtaaaaataataatttcggtgcccct 434  Q
    |||||||||||||||||||||||||| |||||||||    
T  7887289 taactactaagtaaaaataataattttggtgcccct 7887324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 16569290 - 16569364
Alignment:
Q  296 tttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaa 373  Q
    ||||||||||||||||||  ||||| ||||| ||||||| || | ||| ||||||||  |||||||||||||||||||    
T  16569290 tttcttcttgcatttttt--tgcaatagatttatttatattcaaggttttctaaaaac-atattttcaatagaattaa 16569364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 39790027 - 39790064
Alignment:
Q  276 cttttaattatcctaatatttttcttcttgcatttttt 313  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  39790027 cttttaaatattctaatatttttcttcttgcatttttt 39790064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 14499064 - 14499104
Alignment:
Q  296 tttcttcttgcattttttgttgcaaaagattcatttataat 336  Q
    |||||||||| ||||||||||  ||||||||||||||||||    
T  14499064 tttcttcttgtattttttgttcaaaaagattcatttataat 14499104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 231 - 399
Target Start/End: Original strand, 33510019 - 33510187
Alignment:
Q  231 gtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatattt-ttcttcttgcattttttgttgcaaaagattcat 329  Q
    ||||||||||| |||||| |  || ||||||| |||||||||||| ||||||||||  |||| ||  || || ||| |||||||||||||||||||||||    
T  33510019 gtcctaagatttttggtgtccagggcgaaacaataaaattgtgccattttaattattttaattttaattttttttgaattttttgttgcaaaagattcat 33510118  T
Q  330 ttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||||  ||||||||| ||||||||||||||||| |||||||||||| |  |||||||||||||||||    
T  33510119 ttataattaaagttctct-aaaaatatattttcaatggaattaatcaaaacgaattaaaaagaaatatat 33510187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 229 - 399
Target Start/End: Original strand, 27538708 - 27538875
Alignment:
Q  229 cggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattca 328  Q
    ||||||||||||| |||||| |||||| |||||| |||| |||| || |||||| |||   ||||||||| |||||| |||||||||||||||| |||||    
T  27538708 cggtcctaagatttttggtgtcttggatgaaacaataaa-ttgtaccattttaactatttcaatattttt-ttcttgtattttttgttgcaaaatattca 27538805  T
Q  329 tttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||| ||||| ||||| | ||||| |||||||||||||||||||||||||||   |||||||| ||||||||    
T  27538806 tttctaatcaaagttatttaaaa-atatattttcaatagaattaatcaaagagaattaaaaataaatatat 27538875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 275 - 380
Target Start/End: Complemental strand, 11365209 - 11365105
Alignment:
Q  275 ccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaat 374  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | | |||||||| |||||||| ||||||||    
T  11365209 ccttttaattattcaaatatttttcttcttgcattttttgttgcaaaatattcatttataatcaaagttat-ttaaaaatatcttttcaattgaattaat 11365111  T
Q  375 caaagc 380  Q
    ||||||    
T  11365110 caaagc 11365105  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 277 - 399
Target Start/End: Complemental strand, 15671075 - 15670957
Alignment:
Q  277 ttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatca 376  Q
    |||||||||| |||||||||||||| |   || |||||||||| ||||||||||||||||| ||||| ||||||||  ||||||||||||||||||||||    
T  15671075 ttttaattattctaatatttttcttgt---atattttgttgcacaagattcatttataatcaaagttttctaaaaag-atattttcaatagaattaatca 15670980  T
Q  377 aagcagattaaaaagaaatatat 399  Q
    || || |||||||||||||||||    
T  15670979 aaacaaattaaaaagaaatatat 15670957  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 251 - 399
Target Start/End: Original strand, 33682605 - 33682752
Alignment:
Q  251 ttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaa 350  Q
    ||||||||| || |||| |||||||||||||||| | | ||| | |||||||| |||||| ||||| |||||||||| |||||| || | ||||| ||||    
T  33682605 ttggacgaatcaataaagttgtgcccttttaatttttcgaatgtctttcttctagcatttgttgttacaaaagattcctttatagtcaaggttctttaaa 33682704  T
Q  351 aaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||| ||||||| |||||||||||||||||   |||||||||||||||||    
T  33682705 aaa-atatttttaatagaattaatcaaagtgaattaaaaagaaatatat 33682752  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 266 - 390
Target Start/End: Original strand, 47000824 - 47000946
Alignment:
Q  266 aaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaat 365  Q
    |||||||||||||||||| ||   |||||||||||||||  |||||||||||||||| |||||||||||||| || || ||| |||||||| ||||||||    
T  47000824 aaattgtgcccttttaatcatttaaatatttttcttcttatattttttgttgcaaaatattcatttataatcaaaattatct-aaaaatat-ttttcaat 47000921  T
Q  366 agaattaatcaaagcagattaaaaa 390  Q
    |||||||||||||||  ||||||||    
T  47000922 agaattaatcaaagcgaattaaaaa 47000946  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 235 - 380
Target Start/End: Complemental strand, 11383791 - 11383651
Alignment:
Q  235 taagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttata 334  Q
    ||||||| |||||||| ||||||||||  |||| |||| |||||||||||||   ||||||||| ||   |||||||||||||||||| |||||||||||    
T  11383791 taagatttttggtgccctggacgaaactataaa-ttgtacccttttaattatttaaatatttttatt---gcattttttgttgcaaaatattcatttata 11383696  T
Q  335 atcgaagttctctaaaaaatatattttcaatagaattaatcaaagc 380  Q
    ||| ||||| ||| |||||||| |||||||| ||||||||||||||    
T  11383695 atcaaagttatct-aaaaatattttttcaattgaattaatcaaagc 11383651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 278 - 376
Target Start/End: Original strand, 168656 - 168752
Alignment:
Q  278 tttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatca 376  Q
    ||||||||| ||||| | |||||| |||||||||||||| ||||||||||||| |||||| | |||||||  |||||||||||||||||||||||||||    
T  168656 tttaattattctaatttctttcttgttgcattttttgttacaaaagattcattcataatcaaggttctct--aaaatatattttcaatagaattaatca 168752  T

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Target: chr3; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 252 - 387
Target Start/End: Complemental strand, 33290883 - 33290750
Alignment:
Q  252 tggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaa 351  Q
    ||||||||||| |||| || || | ||||||||||   ||||||||||| ||||| |||||||||||| ||||||||||||| ||| |||||||||| ||    
T  33290883 tggacgaaacaataaagttatgtctttttaattatttcaatatttttctccttgcgttttttgttgcacaagattcatttatgatcaaagttctcta-aa 33290785  T
Q  352 aatatattttcaatagaattaatcaaagcagattaa 387  Q
    ||||||  ||||||| |||||||||||||| |||||    
T  33290784 aatata-attcaataaaattaatcaaagcaaattaa 33290750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 52704608 - 52704680
Alignment:
Q  265 aaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatc 337  Q
    |||||||||||||||||||||| |||||||||||| | ||| ||||||||||||| |||||||||||||||||    
T  52704608 aaaattgtgcccttttaattattctaatatttttcattttgtattttttgttgcacaagattcatttataatc 52704680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 253 - 399
Target Start/End: Original strand, 19149800 - 19149940
Alignment:
Q  253 ggacgaaacagtaaaattgtgcccttttaattatcctaatatttttctt-cttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaa 351  Q
    ||||||||||  ||||||  |||||||||||||| | ||||||||| || |||||||||||| ||| |||||||| |||||||||| |    ||||   |    
T  19149800 ggacgaaacaacaaaattacgcccttttaattattccaatatttttttttcttgcattttttattgtaaaagatttatttataatcaa----ctct---a 19149892  T
Q  352 aatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    ||||||||||| ||| |||||||||||||  |||||||||||||||||    
T  19149893 aatatattttcgatataattaatcaaagcgaattaaaaagaaatatat 19149940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 54417032 - 54417092
Alignment:
Q  318 caaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaag 379  Q
    |||||||||||||||||||| || |||| | ||||| ||||||||| |||||||||||||||    
T  54417032 caaaagattcatttataatcaaaattct-ttaaaaacatattttcagtagaattaatcaaag 54417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 17713414 - 17713321
Alignment:
Q  295 ttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaa 390  Q
    |||| |||||| | ||||| |||||||| ||||||| |||||| || ||||||| ||||||| || |||||| ||||||||||||||  |||||||    
T  17713414 tttttttcttgtactttttcttgcaaaatattcattcataatcaaaattctcta-aaaatat-ttgtcaatataattaatcaaagcaatttaaaaa 17713321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 19014643 - 19014550
Alignment:
Q  295 ttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaa 390  Q
    |||| |||||| | ||||| |||||||| ||||||| |||||| || ||||||| ||||||| || |||||| ||||||||||||||  |||||||    
T  19014643 tttttttcttgtactttttcttgcaaaatattcattcataatcaaaattctcta-aaaatat-ttgtcaatataattaatcaaagcaatttaaaaa 19014550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 378
Target Start/End: Complemental strand, 46744076 - 46744007
Alignment:
Q  308 ttttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaa 378  Q
    |||||| |||||||||||||||| |||||  | |||||   ||||||||||||| ||||||||||||||||    
T  46744076 tttttttttgcaaaagattcattcataattaaggttct-acaaaaatatatttttaatagaattaatcaaa 46744007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 39838593 - 39838529
Alignment:
Q  310 ttttgttgcaaaagattcatttataatcgaa-gttctctaaaaaatatattttcaatagaattaatca 376  Q
    ||||||||||||||||||||| |||||| || ||||| |||||   |||||||||||| |||||||||    
T  39838593 ttttgttgcaaaagattcattcataatcaaaggttctttaaaa---atattttcaatataattaatca 39838529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 266 - 372
Target Start/End: Complemental strand, 1816 - 1711
Alignment:
Q  266 aaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaat 365  Q
    |||||||| | ||||||||||   ||||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  1816 aaattgtgtctttttaattatttcaatatttttcttctttcattttttattgcaaaagatttatttataatcaaagttctcta-aaaatatattttcaat 1718  T
Q  366 agaatta 372  Q
    | |||||    
T  1717 aaaatta 1711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 266 - 372
Target Start/End: Complemental strand, 9879 - 9774
Alignment:
Q  266 aaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaat 365  Q
    |||||||| | ||||||||||   ||||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  9879 aaattgtgtctttttaattatttcaatatttttcttctttcattttttattgcaaaagatttatttataatcaaagttctcta-aaaatatattttcaat 9781  T
Q  366 agaatta 372  Q
    | |||||    
T  9780 aaaatta 9774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 266 - 379
Target Start/End: Complemental strand, 499 - 387
Alignment:
Q  266 aaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaat 365  Q
    ||||||||||| ||||||||| | |||||||||||||||||||||||| ||| |||| ||| |||||||||| ||||| ||| |||||||| ||||||||    
T  499 aaattgtgcccctttaattattcaaatatttttcttcttgcattttttattgtaaaatattaatttataatcaaagttatct-aaaaatattttttcaat 401  T
Q  366 agaattaatcaaag 379  Q
     |||||||| ||||    
T  400 tgaattaattaaag 387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 229 - 399
Target Start/End: Complemental strand, 6053 - 5884
Alignment:
Q  229 cggtcctaagattcttggtgccttggacgaaacagtaaaattgtgcccttttaattatcctaatatttttcttcttgcattttttgttgcaaaagattca 328  Q
    ||||||||||||| ||  |||| ||||||||  | | ||||| || ||||||||||||   ||| | ||||||| || ||||||| |||||||| |||||    
T  6053 cggtcctaagatttttaatgccctggacgaattaatgaaattatgtccttttaattatttgaatgtctttcttcatgtattttttattgcaaaaaattca 5954  T
Q  329 tttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    || |||||| || |||| | ||||| |||||||||||| ||||||||||||||  ||| ||||||||||||    
T  5953 ttcataatcaaaattct-ttaaaaacatattttcaatataattaatcaaagcaatttagaaagaaatatat 5884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 264 - 399
Target Start/End: Complemental strand, 9876 - 9740
Alignment:
Q  264 taaaattgtgccctttt-aattatcctaata--tttttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattt 360  Q
    ||||||||||||||||| |||||| | |||   |||||||| ||  ||||||||||| ||||  ||||||||||||| ||||| |||||||| ||||||     
T  9876 taaaattgtgccctttttaattattccaattagtttttctttttatattttttgttgtaaaac-ttcatttataatcaaagttttctaaaaa-tatattc 9779  T
Q  361 tcaatagaattaatcaaagcagattaaaaagaaatatat 399  Q
    |||||| ||||||||||| |  |||||||||| ||||||    
T  9778 tcaatataattaatcaaaccgaattaaaaagatatatat 9740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 352 - 390
Target Start/End: Complemental strand, 65126 - 65088
Alignment:
Q  352 aatatattttcaatagaattaatcaaagcagattaaaaa 390  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  65126 aatatattttcaatagaattaatcaaagcaaattaaaaa 65088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 390
Target Start/End: Complemental strand, 47628 - 47535
Alignment:
Q  296 tttcttcttgcattttttgttgcaaaagattcatttataatcgaagttctctaaaaaatatattttcaatagaattaatcaaagcagattaaaaa 390  Q
    ||||||| ||||||| ||||||||| | ||||||| ||| || |||||  ||| ||| ||||||||||||| ||||||| |||| | ||||||||    
T  47628 tttcttcatgcatttgttgttgcaagaaattcattcatattcaaagtttgctacaaa-tatattttcaataaaattaattaaagaaaattaaaaa 47535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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