View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2710-Insertion-6 (Length: 586)
Name: NF2710-Insertion-6
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710-Insertion-6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 7 - 586
Target Start/End: Original strand, 44694284 - 44694873
Alignment:
| Q |
7 |
aggagatggacaaamtgggaactgggttttcaaggtttttgatcttaattctgtttggaaaggtgaacaagagagtggtgataacgacgaagatgaatgt |
106 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44694284 |
aggagatggacaaaatgggaactgggttttcaaggtttttgatcttaattctgtttggaaaggggaacaagagagtggtgataacgacggagatgaatgt |
44694383 |
T |
|
| Q |
107 |
gatgtttgtagagttgatgaagaggtagacgatgaaaatgaagatgaagagattcggtttgatagagagtcgttttctagaatgcttcgtagggtaactt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694384 |
gatgtttgtagagttgatgaagaggtagacgatgaaaatgaagatgaagagattcggtttgatagagagtcgttttctagaatgcttcgtagggtaactt |
44694483 |
T |
|
| Q |
207 |
tagttgaagcaagaatgtatgcacacatgtctcacttggggaatttggcatactctattcccaatatcaaggtttatttcatcattaatttccttttatg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694484 |
tagttgaagcaagaatgtatgcacacatgtctcacttggggaatttggcatactctattcccaatatcaaggtttatttcatcattaatttccttttatg |
44694583 |
T |
|
| Q |
307 |
ctttcatgtctttctgcacttctttatacataaggaatgtataggcatacaaattagcattaaaaaatcttcatagttttggcattgataaggcaattat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44694584 |
ctttcatgtctttctgcacttctttatacataaggaatgtttaggcatacaaattagcattaaaaaatcttcatagttttggcattgataaggcaattat |
44694683 |
T |
|
| Q |
407 |
atgccagactaaaggcgtgtccggtacacaatgtctgacacatgtggttaccgtgtcagctttaatgtcgtgtctagtgtc----------tcagtgttt |
496 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44694684 |
atgccatactaaaggcgtgtccggtacacaatgtctgacacatgtggttaccgtgtcagctttaatgtcgtgtctagtgtctgtgtttgcgtcagtgttt |
44694783 |
T |
|
| Q |
497 |
gatattgtaggatttattggaaatgcattgctctaagattgcatgtttgatattgtgtctaatttgtgacctgatcgatgattggtggaa |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44694784 |
gatattgtaggatttattggaaatgcattgctctaagattgcatgtttgatattgtgtctaatttgtgacctgatcgataattggtggaa |
44694873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University