View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2710-Insertion-7 (Length: 544)
Name: NF2710-Insertion-7
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710-Insertion-7 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold1636 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 8 - 544
Target Start/End: Original strand, 9938443 - 9938979
Alignment:
| Q |
8 |
taactaacttgtaacaagcatatcctaacaatcactctcttaaactgaaccttatgacagacaaatttagtttacaaacatatatcacaaagaattaaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9938443 |
taactaacttgtaacaagcatatcctaacaattactctcctaaactgaaccttatgacaaacaaatttagtttacagacatatatcacaaagaattaaga |
9938542 |
T |
|
| Q |
108 |
catttcacagatgcctagtttctccctcaatttgcaaaaggtttccagcttcaaaggccaagtcataatatctgcaatctgttcttgagtactctcaacc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
9938543 |
catttcacagatgcctagtttctccctcaatttgcaaaaggtttccagcttcaaaagccaagtcataatatctgcaatctgttcctgagtactctca-cc |
9938641 |
T |
|
| Q |
208 |
actccttcttttgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaac |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9938642 |
actccttcttctgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaac |
9938741 |
T |
|
| Q |
308 |
tattatcacatagtataactgtgcactcaatatggtaacaaagttgagtctggatgtcttagttgcttataggcgtgctgaaaatgatgtatgtaacttt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9938742 |
tattatcacatagtataactgtgcactcaatatggtaacaaagttgagtctggatgccttagttgcttataggcgtgctgaaaatgatgtatgtaacttt |
9938841 |
T |
|
| Q |
408 |
cttggtcgaccattgagttgtcctctaaccagtctattcccatgtaatctttattcggaaaatgtaattgaggggaggatatttttgaact-tgtattac |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
9938842 |
cttggtcgaccattgagttgtcctctaactggtctattcccatgtaatctttattcgaaaaatgtaattgaggggaggatatttttggactgcgtattac |
9938941 |
T |
|
| Q |
507 |
aaacaaatttgcagctcgaacatatttctttctcccga |
544 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9938942 |
aaacaaatttgcagctcaaacatatttctttctcccga |
9938979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 40609865 - 40609935
Alignment:
| Q |
247 |
acatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattatcaca |
317 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || ||||| || || || || || ||||||||||| |
|
|
| T |
40609865 |
acatctatatgtttgcatctaccatgcatgactggattcttagatagctttattgatgagctattatcaca |
40609935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 17536300 - 17536385
Alignment:
| Q |
232 |
agaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattatcaca |
317 |
Q |
| |
|
||||| || |||| ||||||||| ||||| | ||||||||| | |||||||| || || |||||||||| |||||||||||||| |
|
|
| T |
17536300 |
agaaaatgatatcgcacatctatgtgtttacttctcccatgtaaaactgggttcttggagagtttgatagttgaactattatcaca |
17536385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 30967099 - 30967216
Alignment:
| Q |
200 |
tctcaaccactccttcttttgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgat |
299 |
Q |
| |
|
||||||| | ||||| |||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||| || || ||||| | |||||| || |
|
|
| T |
30967099 |
tctcaactattccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaat |
30967198 |
T |
|
| Q |
300 |
agaggaactattatcaca |
317 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
30967199 |
agatgaactattatcaca |
30967216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 14178910 - 14178835
Alignment:
| Q |
242 |
atctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattatcaca |
317 |
Q |
| |
|
||||||||||||| || |||||||| |||||||||| ||||| |||||| || |||||||||||||||||||| |
|
|
| T |
14178910 |
atctcacatctatgtgcttgcatcttacatgcatcacagggttcgtagacaactttatagaggaactattatcaca |
14178835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 317
Target Start/End: Complemental strand, 42971937 - 42971834
Alignment:
| Q |
214 |
tcttttgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattat |
313 |
Q |
| |
|
||||| ||||| || || ||||| |||||||| ||||| || |||||||||||||||||||| | || ||||| ||||| || || || |||||||||| |
|
|
| T |
42971937 |
tctttagtaaggtcccttagaaaatggtatctaacatcaatgtgtttgcatctcccatgcatgataggattttttgacagcttaatggaagaactattat |
42971838 |
T |
|
| Q |
314 |
caca |
317 |
Q |
| |
|
|||| |
|
|
| T |
42971837 |
caca |
42971834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 47144776 - 47144730
Alignment:
| Q |
244 |
ctcacatctatatgtttgcatctcccatgcatcactgggtttttaga |
290 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| || ||||| |
|
|
| T |
47144776 |
ctcacatctatatgcttgcatctcccatgcataactggattcttaga |
47144730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1636 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1636
Description:
Target: scaffold1636; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 671 - 610
Alignment:
| Q |
214 |
tcttttgtaagatctctgagaaa-gtggtatctcacatctatatgtttgcatctcccatgca |
274 |
Q |
| |
|
|||||||||||||| || | ||| ||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
671 |
tcttttgtaagatccctcaaaaaagtgatacctcacatctatatgtttgcatcttccatgca |
610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 45825234 - 45825319
Alignment:
| Q |
232 |
agaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattatcaca |
317 |
Q |
| |
|
||||| || |||| ||||||||| ||||| | ||||||||| | |||||||| || || |||||||||| |||||||||||||| |
|
|
| T |
45825234 |
agaaaatgatatcgcacatctatgtgtttacttctcccatgtaaaactgggttcttggagagtttgatagttgaactattatcaca |
45825319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University