View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2710-Insertion-8 (Length: 425)

Name: NF2710-Insertion-8
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2710-Insertion-8
NF2710-Insertion-8
[»] chr5 (2 HSPs)
chr5 (5-425)||(9712266-9712686)
chr5 (361-425)||(9724349-9724413)
[»] chr7 (1 HSPs)
chr7 (142-192)||(36909607-36909657)
[»] chr8 (2 HSPs)
chr8 (316-384)||(31106371-31106440)
chr8 (152-192)||(6020663-6020703)
[»] scaffold0316 (1 HSPs)
scaffold0316 (148-191)||(16023-16066)
[»] chr6 (1 HSPs)
chr6 (123-192)||(2782983-2783052)
[»] chr2 (2 HSPs)
chr2 (126-167)||(37561553-37561594)
chr2 (205-269)||(17220847-17220911)
[»] chr3 (1 HSPs)
chr3 (15-47)||(2577163-2577195)


Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 5 - 425
Target Start/End: Complemental strand, 9712686 - 9712266
Alignment:
Q  5 acataagacgcatttgagaatcaaactaactaatgaaagacaatttgatgaccaaaatggctgatgaaagtcgcatttgggtatgttggtgcatgtctga 104  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9712686 acataagatgcatttgagaatcaaactaactaatgaaagacaatttgatgaccaaaatggctgatgaaagtcgcatttaggtatgttggtgcatgtctga 9712587  T
Q  105 aatgaattggcggtaagtttagcggaatcacggcaagccaccatgattttggcaaaagctacattctagagcttcaacaaaatcatggcgccgtgagtac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9712586 aatgaattggcggtaagtttagcggaatcacggcaagccaccatggttttggcaaaagctacattttagagcttcaacaaaatcatggcgccgtgagtac 9712487  T
Q  205 tttgaaattttgatacattcaaagactattgtgacatcacatcacacatttaaggtccaaaatgattgtttactccattgagaaattacatttttaagga 304  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712486 tttgaaattttgatacattcaaagactattgtgacaacacatcacacatgtaaggtccaaaatgattgtttactccattgagaaattacatttttaagga 9712387  T
Q  305 gcatcaaaggttatgaacatgtatctgcttggcaggtatattggagtttctactggtaatatttcagttttgaagcttgatcaaaatttgcatgtggtac 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712386 gcatcaaaggttatgaacatgtatctgcttggcaggtatattggagtttctactggtaatatttcagttttgaagcttgatcaaaatttgcatgtggtac 9712287  T
Q  405 ggatgagttacactatacccc 425  Q
    |||||||||||||||||||||    
T  9712286 ggatgagttacactatacccc 9712266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 9724413 - 9724349
Alignment:
Q  361 taatatttcagttttgaagcttgatcaaaatttgcatgtggtacggatgagttacactatacccc 425  Q
    |||||||||||||||||||||||||||||||||||| ||||||  | ||| |||||| |||||||    
T  9724413 taatatttcagttttgaagcttgatcaaaatttgcacgtggtaaagttgaattacaccatacccc 9724349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 36909607 - 36909657
Alignment:
Q  142 ccaccatgattttggcaaaagctacattctagagcttcaacaaaatcatgg 192  Q
    |||||||||||||| ||| ||||||| |||||||||| |||||||||||||    
T  36909607 ccaccatgattttgacaagagctacactctagagctttaacaaaatcatgg 36909657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 31106371 - 31106440
Alignment:
Q  316 tatgaacatgtatctgc-ttggcaggtatattggagtttctactggtaatatttcagttttgaagcttga 384  Q
    ||||||||||||||||  |||  ||||||||||||  ||||| ||||||||| |||||||||||||||||    
T  31106371 tatgaacatgtatctgtgttgataggtatattggacattctaatggtaatatatcagttttgaagcttga 31106440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 6020703 - 6020663
Alignment:
Q  152 tttggcaaaagctacattctagagcttcaacaaaatcatgg 192  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  6020703 tttggcaaaaactacactttagagcttcaacaaaatcatgg 6020663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 16066 - 16023
Alignment:
Q  148 tgattttggcaaaagctacattctagagcttcaacaaaatcatg 191  Q
    |||||||||||||||||||||| | || ||||||||||||||||    
T  16066 tgattttggcaaaagctacattttggaacttcaacaaaatcatg 16023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 2782983 - 2783052
Alignment:
Q  123 ttagcggaatcacggcaagccaccatgattttggcaaaagctacattctagagcttcaacaaaatcatgg 192  Q
    |||| ||||||||||| |||||| |||||||||   |||||| || | | ||||||||||||||||||||    
T  2782983 ttagtggaatcacggcgagccactatgattttgttgaaagctgcactttggagcttcaacaaaatcatgg 2783052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 37561553 - 37561594
Alignment:
Q  126 gcggaatcacggcaagccaccatgattttggcaaaagctaca 167  Q
    ||||||||||||  |||||||||||||||| |||||||||||    
T  37561553 gcggaatcacggtgagccaccatgattttgccaaaagctaca 37561594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 17220847 - 17220911
Alignment:
Q  205 tttgaaattttgatacattcaaagactattgtgacatcacatcacacatttaaggtccaaaatga 269  Q
    |||| |||||||||||||| |  |||||||||||||  || ||| |||||||||| |||||||||    
T  17220847 tttgtaattttgatacatttagcgactattgtgacaggacttcaaacatttaaggaccaaaatga 17220911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 2577195 - 2577163
Alignment:
Q  15 catttgagaatcaaactaactaatgaaagacaa 47  Q
    |||||||||||||||||||||||| ||||||||    
T  2577195 catttgagaatcaaactaactaataaaagacaa 2577163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University