View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2710-Insertion-9 (Length: 417)
Name: NF2710-Insertion-9
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710-Insertion-9 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Original strand, 33162746 - 33163158
Alignment:
| Q |
8 |
tggataccagaaacattgcttcattttttgttgtttgatgtttatagggttcttagacctggtgggttgttttggttggaccatttcttttgtgttgggg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33162746 |
tggataccagaaacattgcttcattttttgttgtttgatgtttatagggttcttagacctggtgggttgttttggttggaccatttcttttgtgttgggg |
33162845 |
T |
|
| Q |
108 |
atcaattggagaatgtttatggacctatgattgagagtgtagggtttaagaaagttaagtgggttactgggaagaagcttgataagggaccccaatttca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33162846 |
atcaattggagaatgtttatggacctatgattgagagtgtagggtttaagaaagttaagtgggttactgggaagaagcttgataagggaccccaatttca |
33162945 |
T |
|
| Q |
208 |
ggaaatgtatctttctgctttgttggagaagccattcaaggattcttggtgaataacaatgttttcaaatttctctctc---nnnnnnnnnnnnntgttt |
304 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33162946 |
ggaaatgtacctttctgctttgttggagaagccattcaaggattcttggtgaataacaatgttttcaaatttctctctcaaaaaaaaaaaaaaaatgttt |
33163045 |
T |
|
| Q |
305 |
aaaaattgaaccgaatcaactagttcaatcgcgtgaatttgaattgtctatggttaattacttgggtggcttgattgcaattttgtcgtagtttgaatga |
404 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33163046 |
aaaaattgaaccgaatcagctagttcaatcgcgtgaatttgaattgtctatggttaattacttgagtggcttgattgcaattttgtcgtagtttgaatga |
33163145 |
T |
|
| Q |
405 |
taatgacggttaa |
417 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
33163146 |
taattacggttaa |
33163158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University