View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710R-Insertion-10 (Length: 703)
Name: NF2710R-Insertion-10
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 177 - 703
Target Start/End: Complemental strand, 43937254 - 43936729
Alignment:
| Q |
177 |
gtgattcataccgccaggaattagaagctgagaatgcaaatcttttatctcgacttgctcattgccagtgctccgaggttagctactcgattgtttcata |
276 |
Q |
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| T |
43937254 |
gtgattcataccgccaggaattagaagctgagaatgcaaatcttttatctcgacttgctcattgccagtgctccgaggttagctactcgattgtttcata |
43937155 |
T |
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| Q |
277 |
tttcttttgnnnnnnnncgtgctatgtttgttttattttcttggccatggagcatagtgatagtattcagtcaggaatcactttatcaaagaaaaaagta |
376 |
Q |
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| T |
43937154 |
tttcttttgttttttt-cgtgctatgtttgttttattttcttggccatggagcatagtgataatattcagtcaggattgacttaatcaaagaaaaaagta |
43937056 |
T |
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| Q |
377 |
aagggaagtgttgaaaaagggttttgtgaatttgtctgcatttttcacacaataaatatatgtaaatttgtgatgcaggttgataaaaaagtatatgctc |
476 |
Q |
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| T |
43937055 |
aagggaagtgttgaaaaagggttttgtgaatttgtcttcatttttcacacaataaatatatgtaaatttgtgatgcaggttggtaaaaaagtatatgctc |
43936956 |
T |
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| Q |
477 |
ccgatgataaaacagcggaggtgacagaaccgaaaatatccaacgggaaatcagaagagacgacaaagaaaaagccaggtttatttttctcaatattttc |
576 |
Q |
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| T |
43936955 |
ccgatgataaaacagcggaggtgacagaaccgaaaatatccaacgggaaatcagaagagacgacaaagaaaaagccaggtttatttttctcaatattttc |
43936856 |
T |
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| Q |
577 |
tttagaagactattagtgacacctgtgatgcagatgttacgagaaaacactgttttttgttttgaatgcatgatggcattgccatgacaactttctttct |
676 |
Q |
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| T |
43936855 |
tttagaagactattagtgacacctgtgatgtagatgttacgagaaaacactgttttttgttttgaatgcatgatggcattgccatgacaactttctttct |
43936756 |
T |
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| Q |
677 |
gaaaataatataagaattaagcttcga |
703 |
Q |
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| T |
43936755 |
gaaaataatataagaattaagcttcga |
43936729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 43937437 - 43937301
Alignment:
| Q |
9 |
aaggtactgtactttctttcagccaattttctcattcaaaaccttcatattcagtcgacatattgcactcattttatactatatgataaattgatagcat |
108 |
Q |
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| T |
43937437 |
aaggtactgtactttctttcagccaattttctcattcaaaaccttcatattcagtcgacatattgcactcattttatactatatgataaattgatagcat |
43937338 |
T |
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| Q |
109 |
agcaatgtaggcatcaaggattatgcattattcttag |
145 |
Q |
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| T |
43937337 |
agcaatgtaggcatcaaggattatgcattattcttag |
43937301 |
T |
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