View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710R-Insertion-12 (Length: 611)
Name: NF2710R-Insertion-12
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 9 - 609
Target Start/End: Original strand, 16509527 - 16510112
Alignment:
| Q |
9 |
cgatgcttgcgttcgatgattttttgaaagctacgaacacgaaagttgcttctgttgatgaatcgatgaaatcaatggaggctgaatcaacggttcaaac |
108 |
Q |
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| T |
16509527 |
cgatgcttgcgttcgatgattttttgaaagctacgaacacgaaagttgcttctgttgatgaatcgttgaaatcaatggaagctgaatcaacgattcaaat |
16509626 |
T |
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| Q |
109 |
gaaggtagaaagttctgatgttgatgtggttttcgagacgcaagaatcggtgaaatcattggatgaagttcctaatctcaatgtggtttgcgatacacaa |
208 |
Q |
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| T |
16509627 |
gaaggtagaaagttctgatgttgatgtagtttttgagacgcaagaatcggtgaaatcaatggaagaagttcctaatctcaatgtggtttgcgatacacaa |
16509726 |
T |
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| Q |
209 |
gaatcggttatggttgaaccggttaaggttgagccggttaaggttgaaccggttaaggttgaaccagttaaacaaccaacattggctgaaccggtttgtg |
308 |
Q |
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| T |
16509727 |
gaatcggttatggctgaaccgg---------------ttaaggttgaaccggttaaggttggaccggttaaacaaccaacattggctgaaccggtttgtg |
16509811 |
T |
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| Q |
309 |
cagagaagaaaaccgtttgtgatgatgaagtggaagtgttgaaggtggtgaaagggaaagcagctgtgagtgatgaagttagggttttgaaggtggtgaa |
408 |
Q |
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| T |
16509812 |
cagagaagaaaaccgtttgtgatgatgaagtggaagtgttgaaggtggtgaaggggaaagaagctgtgagtgatgaagttagggttttgaaggtggtgaa |
16509911 |
T |
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| Q |
409 |
gaaggaggtagttgaggagaagaagattctgattccgaatctcgaggatggtgagtttcctgttgagcctgggtggtcattgttgggaaggaagattgag |
508 |
Q |
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||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16509912 |
gaaggaggtagttgaagagaagaagatccagattccgaatcttgaggatggtgagtttcctgttgagcctgggtggtcattgttgggaaggaagattgag |
16510011 |
T |
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| Q |
509 |
attgctacttctactgctaaaggagtgagaagattggttgataatgagattatttattttgattttccgaatccgcatacgtcgtataagtttcaatgga |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16510012 |
attgctacttctactgctaaaggagtgagaagattggtggataatgagattatttattttgattttccgaatccgcatacgtcgtataagtttcaatgga |
16510111 |
T |
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