View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710R-Insertion-13 (Length: 554)
Name: NF2710R-Insertion-13
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-13 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 4108446 - 4108064
Alignment:
| Q |
9 |
gctgatggtgatgttctcaaatcctctgacaatgttgtt--caggtatgtactgttaatgtatttattgattatgttaagtgatgtgatcctataacatt |
106 |
Q |
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| T |
4108446 |
gctgatggtgatgttctcaaatcctctgacactgttgttaacaggtatatactgttaatgtattgattg----tgttaagtgatgtgatcctataacatt |
4108351 |
T |
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| Q |
107 |
gatgtataagttaaagtagaaatgttctctctttcaggatttgttggtttcttcagtggaatctatatatctatgaaaggaattgtagatatttagaagg |
206 |
Q |
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| T |
4108350 |
gatgtataagctaaagtagaaatgttctctctttcaggatttgttggtttcttcagtggaatctatatatcaatgaaaggaattgtagat-tttagaagg |
4108252 |
T |
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| Q |
207 |
tgtttatgaatactatatcgtgtttatgaatactatatgcccacaaaatgtatagatacgatataagcgtttataagggctttttatttcataagatact |
306 |
Q |
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| T |
4108251 |
tgtt--------------------tatgactactatatgcccacaaaatgtatagatacgatataagggtttataagggctttt-atttcataagatact |
4108173 |
T |
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| Q |
307 |
ttatgaaatactgtatgaggtgttggtatagtagcaacgatgttatgtaaggtagaattttttactcatgataattgatgtaggaacattgatgaaataa |
406 |
Q |
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| T |
4108172 |
ttatgaaatactgtatgaggtgttggtatagtagcaacgatgttatgtaaggtagaattttttactcatgataattcatgtaggaacattgatgaaataa |
4108073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 437 - 554
Target Start/End: Complemental strand, 34779519 - 34779402
Alignment:
| Q |
437 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
536 |
Q |
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| T |
34779519 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
34779420 |
T |
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| Q |
537 |
aatttcaaagggctgtgt |
554 |
Q |
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| T |
34779419 |
aatttcaaagggccgtgt |
34779402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 437 - 554
Target Start/End: Original strand, 34682858 - 34682975
Alignment:
| Q |
437 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
536 |
Q |
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| T |
34682858 |
gaaaactttgatgcttccgttgtaacaatgaagcactttaagacggcaattgaacaagttcagcccacagaaactcagtcctatcaaaagttgtcagcaa |
34682957 |
T |
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| Q |
537 |
aatttcaaagggctgtgt |
554 |
Q |
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| T |
34682958 |
aatttcaaagggctgtgt |
34682975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 8996697 - 8996773
Alignment:
| Q |
149 |
gttggtttcttcagtggaatctatatatctatgaaaggaattgtagatatttag-aaggtgtttatgaatactatat |
224 |
Q |
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| T |
8996697 |
gttggtttctgctgtggaatctacatatctatgaaaggaattgtagatatttagaaaggtgtttgtgaatattatat |
8996773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 8996136 - 8996214
Alignment:
| Q |
71 |
tattgattatgttaagtgatgtgatcctataacattgatgtataagttaaagtagaaatgttctctctttcaggatttg |
149 |
Q |
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| T |
8996136 |
tattgattgtgttaagtgacgttatgctataacattgacttataagctaaggtagaaatgttctctctttcaggatttg |
8996214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 20535 - 20459
Alignment:
| Q |
71 |
tattgattatgttaagtgatgtgatcctataacattgatgtataagttaaagtagaaatgttctctctttcaggatttg |
149 |
Q |
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| T |
20535 |
tattgattgtgttaagtgacgttatgctataac--tgacttataagctaaggtagaaatgttctctctttcaggatttg |
20459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 21412063 - 21411988
Alignment:
| Q |
150 |
ttggtttcttcagtggaatctatatatctatgaaagga-attgtagatatttagaaggtgtttatgaatactatat |
224 |
Q |
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| T |
21412063 |
ttggtttctgctgtggaatctacatatctatgtattaagattgtagatatttagaaggtgtttgtgaatactatat |
21411988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 21412601 - 21412553
Alignment:
| Q |
101 |
aacattgatgtataagttaaagtagaaatgttctctctttcaggatttg |
149 |
Q |
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| T |
21412601 |
aacattgacttataagctaaggtagaaatgttctctctttcaggatttg |
21412553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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