View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2710R-Insertion-15 (Length: 495)
Name: NF2710R-Insertion-15
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-15 |
 | |
|
| [»] scaffold0150 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0150 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 9 - 457
Target Start/End: Complemental strand, 9248 - 8800
Alignment:
| Q |
9 |
ccatctacgttattcccatgaatcggcctatataaatcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccaccaac |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9248 |
ccatctacgttattcccatgaatcggcctatataattcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccaccaac |
9149 |
T |
|
| Q |
109 |
aaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9148 |
aaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtt |
9049 |
T |
|
| Q |
209 |
tgccagttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgataattatat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9048 |
tgccagttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgataattatat |
8949 |
T |
|
| Q |
309 |
ggaacaagtacaaactaaagaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggccttcttcccgcaaacaataccgatgccaac |
408 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8948 |
ggaacaagaacaaactaaagaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggccttcttcccgcaaacaataccgatgccaac |
8849 |
T |
|
| Q |
409 |
aacttgggaggtcgaggaaatttattctatagatgcggaggctgctgta |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
8848 |
aacttgggaggtcgaggaaatttattctatagatgcagaggcggctgta |
8800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 17956 - 18058
Alignment:
| Q |
95 |
cttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctttt |
194 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||| | |||||| | |||||| |||||||||||||| ||| | || ||||| |||||||| |
|
|
| T |
17956 |
cttcttccaccaccaaactgaccctcaaacttcttattgacacaaagaatgaaagagttctctttgctgaagcatctaaacccgttatagactttctttt |
18055 |
T |
|
| Q |
195 |
caa |
197 |
Q |
| |
|
||| |
|
|
| T |
18056 |
caa |
18058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 8469 - 8428
Alignment:
| Q |
454 |
tgtatttttaagttttaacattttgttttattcacacattgg |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8469 |
tgtatttttaagttttaacattttgttttattcacacattgg |
8428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 447
Target Start/End: Original strand, 17020028 - 17020459
Alignment:
| Q |
15 |
acgttattcccatgaatcggcctatataaatcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccaccaacaaagtg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17020028 |
acgttattcccatgaatcggcctatataaatcaataatacagcttcttgatttgttatcattccaatatggcttcttctacttcttccaccaacaaagtg |
17020127 |
T |
|
| Q |
115 |
accctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccag |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17020128 |
accctcaaacttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccag |
17020227 |
T |
|
| Q |
215 |
ttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgataattatatggaaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17020228 |
ttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgatcattatatggaaca |
17020327 |
T |
|
| Q |
315 |
agtacaaactaaagaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggccttcttcccgcaaacaataccgatgccaacaacttg |
414 |
Q |
| |
|
|| ||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17020328 |
agaccaaactaaagagg-tttactgaaccccaaagctcctatctcttcaactgaaattgcaggccttcttccggcaaacaataccgatgccaacaacttg |
17020426 |
T |
|
| Q |
415 |
ggaggtcgaggaaatttattctatagatgcgga |
447 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |
|
|
| T |
17020427 |
ggaggttgaggaaatttgttctatagatgcgga |
17020459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 447
Target Start/End: Original strand, 17550465 - 17550896
Alignment:
| Q |
15 |
acgttattcccatgaatcggcctatataaatcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccaccaacaaagtg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17550465 |
acgttattcccatgaatcggcctatataaatcaataatacagcttcttgttttgttatcattccaatatggcttcttctacttcttccaccaacaaagtg |
17550564 |
T |
|
| Q |
115 |
accctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccag |
214 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17550565 |
accctcaaacttcttattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaagctgtgatagattttcttttcaatctgcttcgtttgccag |
17550664 |
T |
|
| Q |
215 |
ttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgataattatatggaaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17550665 |
ttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgatcattatatggaaca |
17550764 |
T |
|
| Q |
315 |
agtacaaactaaagaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggccttcttcccgcaaacaataccgatgccaacaacttg |
414 |
Q |
| |
|
|| ||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17550765 |
agaccaaactaaagagg-tttactgaaccccaaagctcctatctcttcaactgaaattgcaggccttcttccggcaaacaataccgatgccaacaacttg |
17550863 |
T |
|
| Q |
415 |
ggaggtcgaggaaatttattctatagatgcgga |
447 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |
|
|
| T |
17550864 |
ggaggttgaggaaatttgttctatagatgcgga |
17550896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 17017117 - 17017015
Alignment:
| Q |
95 |
cttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctttt |
194 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||| | || ||| | |||||| |||||||||||||| ||| | || |||| |||||||| |
|
|
| T |
17017117 |
cttcttccaccaccaaactgaccctcaaacttcttattgacacaaagattgaaagagttctctttgctgaagcatctaaacccgtcgtagactttctttt |
17017018 |
T |
|
| Q |
195 |
caa |
197 |
Q |
| |
|
||| |
|
|
| T |
17017017 |
caa |
17017015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 17547554 - 17547452
Alignment:
| Q |
95 |
cttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctttt |
194 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||| | || ||| | |||||| |||||||||||||| ||| | || |||| |||||||| |
|
|
| T |
17547554 |
cttcttccaccaccaaactgaccctcaaacttcttattgacacaaagattgaaagagttctctttgctgaagcatctaaacccgtcgtagactttctttt |
17547455 |
T |
|
| Q |
195 |
caa |
197 |
Q |
| |
|
||| |
|
|
| T |
17547454 |
caa |
17547452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 289
Target Start/End: Original strand, 17522266 - 17522460
Alignment:
| Q |
95 |
cttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctttt |
194 |
Q |
| |
|
||||||| ||| ||||||| || | || ||||| || ||||| | |||| |||||||||| ||||||||||| |||||| ||||| | || |||||||| |
|
|
| T |
17522266 |
cttcttcttccaccaaagtgtccatgaagcttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagctgtggttgactttctttt |
17522365 |
T |
|
| Q |
195 |
caatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaa |
289 |
Q |
| |
|
||| |||| | |||||| | || |||||||| || || ||| | |||||||||||||||||| | || ||||| ||| | |||||||||| |
|
|
| T |
17522366 |
caacttgctatgcttgccaatcggcactgttgtgaagctactaagcgcaaatggcatggttggtagcttagggaatctgtatgagagtgttgaaa |
17522460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 28 - 392
Target Start/End: Complemental strand, 52134022 - 52133655
Alignment:
| Q |
28 |
gaatcggcctatataaatcaataatacagcttcttggtttgttatcattccaatatggcttcttctacttcttccac---caacaaagtgaccctcaaac |
124 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| ||||||||||| || ||| ||||||||||| |||||||| | |||||||||||||||||||| |
|
|
| T |
52134022 |
gaatcggcctatataaatcaacaatacagcatctcggtttgttatcctttcaacatggcttcttcaacttcttcttctcccaacaaagtgaccctcaaac |
52133923 |
T |
|
| Q |
125 |
ttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccagttggtactgt |
224 |
Q |
| |
|
||||||||||||| | ||||| ||||||||||| |||||||| || ||| |||||||||||||||| || || ||||||| ||||| || ||||| || |
|
|
| T |
52133922 |
ttctcattgacactaaaaatgacaaagttctgttcgctgaagcttccaaagctgtgatagattttctctttaacttgcttcgcttgcctgtcggtacagt |
52133823 |
T |
|
| Q |
225 |
tgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaactttgtccgataattatatggaacaagtacaaact |
324 |
Q |
| |
|
|||||||| | | ||| |||||||||||||||||||| ||||| |||||| | |||||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
52133822 |
agttaaactactgaccaaaaatggcatggttggtagcataggtaacctctatcatagtgttgaaactctgtctgataattatatggaacaaaaccaaact |
52133723 |
T |
|
| Q |
325 |
aaagaggttttgctgaaccccagagctcctatctattcaactgaaattgcaggccttcttcccgcaaa |
392 |
Q |
| |
|
|| |||| | ||||||| | ||||||| ||| ||| ||| |||||| ||| ||||||||||||| |
|
|
| T |
52133722 |
aaggaggaactcttgaacccaatagctcctgtctcttctgctggaattgctggctttcttcccgcaaa |
52133655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 289
Target Start/End: Complemental strand, 52145854 - 52145645
Alignment:
| Q |
77 |
ccaatatggcttcttctacttcttccaccaacaaagtgaccctcaaacttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaac |
176 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| |||| | | || ||||| || || || | ||||||||||||||| ||||||||||| |||||| | |
|
|
| T |
52145854 |
ccaatatggcttcttcttcttctaccaccaa---agtgtctttgaagcttcttatagatacaaagaatgagaaagttctctttgctgaagcttcaaaatc |
52145758 |
T |
|
| Q |
177 |
tgtgatagattttcttttcaatctgcttcgtttgccagttggtactgttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctat |
276 |
Q |
| |
|
||| ||||| ||||| |||||| |||| | |||||| |||| || || ||||| || ||| || ||||||||| ||||||| | || ||||| ||| |
|
|
| T |
52145757 |
tgtaatagactttctgttcaatttgctatgcttgccaattggcaccgtggttaagctcctaagcacaaatggcatgattggtagtttaggaaatctgtat |
52145658 |
T |
|
| Q |
277 |
aacagtgttgaaa |
289 |
Q |
| |
|
| |||||||||| |
|
|
| T |
52145657 |
cagagtgttgaaa |
52145645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 289
Target Start/End: Complemental strand, 52142292 - 52142127
Alignment:
| Q |
124 |
cttctcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttcttttcaatctgcttcgtttgccagttggtactg |
223 |
Q |
| |
|
||||| || ||||| | |||| |||||||||| ||||||||||| |||||| |||| |||| ||||||||||| |||| |||||||| | || |||| |
|
|
| T |
52142292 |
cttcttatcgacacaaagaatcagaaagttctctttgctgaagcttcaaaagctgtcgtagactttcttttcaacttgctatgtttgccaatcggcactg |
52142193 |
T |
|
| Q |
224 |
ttgttaaacttttaaacaagaatggcatggttggtagcattggtaatctctataacagtgttgaaa |
289 |
Q |
| |
|
|||| || || ||| | |||||||||||||||||| | || ||||| ||| | |||||||||| |
|
|
| T |
52142192 |
ttgtgaagctgctaagcgctaatggcatggttggtagcttagggaatctgtatgagagtgttgaaa |
52142127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 52150285 - 52150221
Alignment:
| Q |
128 |
tcattgacaccatgaatgagaaagttctgtttgctgaagcatcaaaaactgtgatagattttctt |
192 |
Q |
| |
|
|||||||||| | ||| ||||||||||| ||||||||| |||||||| |||| ||||| ||||| |
|
|
| T |
52150285 |
tcattgacacaaagaaggagaaagttctctttgctgaaacatcaaaacctgtagtagatattctt |
52150221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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