View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710R-Insertion-16 (Length: 453)
Name: NF2710R-Insertion-16
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-16 |
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Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Original strand, 10068979 - 10069415
Alignment:
| Q |
9 |
ggacttggagctggtgcatctgcagctgaaacasttgatgctgccatcatcatggccactacaaccatagcaaaaaattgcttcatcttcaatgcttcca |
108 |
Q |
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| T |
10068979 |
ggacttggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatggccactaccagcatagcaaaaaattgcttcatcttcaatgcttcca |
10069078 |
T |
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| Q |
109 |
tttctgaaaattttcttggaaattttgtttcttttcttgcgaggaaagaaatcgagaaaagtggttaggcaaagacaaggataggtagtggatgaatatt |
208 |
Q |
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| T |
10069079 |
tttctgaaaattttcttggaaattttgtttcttttcttgcaaggaaagaaatcgagagaagtggttaggcaaagacaaggataggtagtggatgaatatt |
10069178 |
T |
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| Q |
209 |
aagtgtatgtctatgtgactttatatagttgcaatagaggatgaaaataaaataaagcaaatttttgggattatttaatttctgatgg-cagcctgcctc |
307 |
Q |
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| T |
10069179 |
aagtgtatgtctatgcgactttatatagttgcaatagaggatgaaaataaaataaagcaaatttttgggattatttaatttttgatggccagcctgcctc |
10069278 |
T |
|
| Q |
308 |
aacttattgttttcgaggatttcaaggatgatgacaattgtcttgttgatgagagaggaaataagttttggtggtttcattcttcttgtttttgagacga |
407 |
Q |
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| T |
10069279 |
aacttattgttttcgaggatttcaaggatgatgacaattgtcttgttgatgagagaggaaataagttttggtggtttcattcttcttgtttttgagacga |
10069378 |
T |
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| Q |
408 |
ttaactaaacgcaacgcagatactcacatgcctcttt |
444 |
Q |
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| T |
10069379 |
ttaactgaacgcaacgcagaaactcacatgcctcttt |
10069415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 10106736 - 10106970
Alignment:
| Q |
8 |
aggacttggagctggtgcatctgcagctgaaacasttgatgctgccatcatcatggccactacaaccatagcaaaaaattgcttcatcttcaatgcttcc |
107 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||| ||| |
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| T |
10106736 |
aggacttggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatgaccactaccaccatagcaaaaatttgattcatcttcaatgcctcc |
10106835 |
T |
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| Q |
108 |
atttct---gaaaattttcttggaaattttgtttcttttcttgcgaggaaagaaatcgagaaaagtggttaggcaaagacaaggataggtagtggatgaa |
204 |
Q |
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| T |
10106836 |
atttctataaaaaaaaaacttggaaattttctttcttttcttttgaggaaagaaagtgagaggaatgggtaggcaaatacaaggataggtagtggatgaa |
10106935 |
T |
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| Q |
205 |
tattaagtgtatgtctatgtgactttatatagttg |
239 |
Q |
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| T |
10106936 |
tattaagtgtatgtctatgtgactttatatagttg |
10106970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 33252941 - 33252909
Alignment:
| Q |
9 |
ggacttggagctggtgcatctgcagctgaaaca |
41 |
Q |
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| T |
33252941 |
ggacttggagctggtgcatcagcagctgaaaca |
33252909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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