View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710R-Insertion-17 (Length: 440)
Name: NF2710R-Insertion-17
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 440
Target Start/End: Original strand, 3810589 - 3811021
Alignment:
| Q |
8 |
aaaatttgacttataattggtgcaggtatgcttcggagatggctgtgatatttatccaatctgcaatatacataggaataatagcaatgacgcatttggc |
107 |
Q |
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| T |
3810589 |
aaaatttgacttataattggtgcaggtatgcttcggagatggctgtgatatttatccaatctgcaatatacataggaataatagcaatgacgcgtttggc |
3810688 |
T |
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| Q |
108 |
aaggccgagcctctcaaaaatatgttttaggcgttccgataagagcatcaccctggcacacaacagcctaaaattagtagcattgtggtgcatacttgct |
207 |
Q |
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| T |
3810689 |
aaggccgagcctctcaaaaatatgttttaggcgttccgataagagcatcaccctggcacacagcagcctaaaattagtagcattgtggtgcatacttgct |
3810788 |
T |
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| Q |
208 |
gcttacgtaacacctgtctttatcatacctcacacaattcaccctctacttggttggatcctgtattttcttggttcttttgcattttgctcaattgcaa |
307 |
Q |
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| T |
3810789 |
gcttacgtaacaccagtctttatcatacctcacacaattcaccctctacttggttggatcctgtattttcttggttcttttgcattttgctcaattgcaa |
3810888 |
T |
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| Q |
308 |
ttaatatctttcttctaccaatgttaccagttttggtaccttggcttgggattcttggagtcctaatggttatggcatttccttggtatcctgatggaat |
407 |
Q |
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| T |
3810889 |
ttaatatctttcttctaccaatgttaccagttttggtaccttggcttgggattcttggagtcctaatggttatggcatttccttggtatcctgatggaat |
3810988 |
T |
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| Q |
408 |
agtaagagctatgtctgtgtttggctatgcatt |
440 |
Q |
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| T |
3810989 |
agtaagagctatgtctgtgtttggctatgcatt |
3811021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 41672925 - 41672783
Alignment:
| Q |
46 |
atggctgtgatatttatccaatctgcaatatacataggaataatagcaatgacgcatttggcaaggccgagcctctcaaaaatatgttttaggcgttccg |
145 |
Q |
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| T |
41672925 |
atggctgtgatacttattcaatcagcaatatatcttggaataatagcactgactcgtttggcaaggccaagcctctcaaaattatgctaccgccgctctg |
41672826 |
T |
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| Q |
146 |
ataagagcatcaccctggcacacaacagcctaaaattagtagc |
188 |
Q |
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| T |
41672825 |
ataagagcatcacattggtacaaaacatcctcaaactagtagc |
41672783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 440
Target Start/End: Complemental strand, 41672655 - 41672531
Alignment:
| Q |
316 |
tttcttctaccaatgttaccagttttggtaccttggcttgggattcttggagtcctaatggttatggcatttccttggtatcctgatggaatagtaagag |
415 |
Q |
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| T |
41672655 |
tttcttcttccagtgttaccggttctgatgccgtggtttggtattattggagttttaattgtcatggcgtttccttggtatccggatggggtagtaagag |
41672556 |
T |
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| Q |
416 |
ctatgtctgtgtttggctatgcatt |
440 |
Q |
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| T |
41672555 |
ctttatgtgtgtttggttatgcatt |
41672531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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