View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710R-Insertion-19 (Length: 421)
Name: NF2710R-Insertion-19
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-19 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 421
Target Start/End: Original strand, 4100760 - 4101172
Alignment:
| Q |
9 |
gaaacaaataataatcgtactactacaatcaaacctcaaggaacacaatggaaaaatttagatcttgatcctaagttgtattattatagagcaacgcttg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
4100760 |
gaaacaaataataatcgtactactacaatcaaacctcaaggtacacaatggaaaaatttagatcttgatcctaagttgtattattatagaggaacacttg |
4100859 |
T |
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| Q |
109 |
attattatggagttttgacacaatattatcatccaagggacactaaagcaaaacatggatggactattatgaggtatgttcctgataacatctgcactgc |
208 |
Q |
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| T |
4100860 |
attattatggagttttgacacaatattatcatccaagggacactaaagcaaaacaaggatggactattatgaggtatgttcctgataacatctgcactgc |
4100959 |
T |
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| Q |
209 |
tatatccaatgaaatgggaagtggaacttgtggctataatagctattgttccatggaaaatcagagacctac-tgtggttatcaatagagctattgtgtt |
307 |
Q |
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| T |
4100960 |
tatattcaatgaaatgggtagtggaacttgtggctataatagctattgttccatggaaaatcagagacctacttgtggttatcaatagagctattgtgtt |
4101059 |
T |
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| Q |
308 |
gaacacaaactttcggttgcacattctcggaccggccttcatctttatttacctccactgtttccctcattatgcaaattcttctcactacgagatgctc |
407 |
Q |
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| T |
4101060 |
gaacacaaactttcggttacacattctcggaccggccttcatctttatttacct-cactgtttcccttattatgcaaattcttctcactacgagatgctc |
4101158 |
T |
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| Q |
408 |
tcgacatattctcc |
421 |
Q |
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| T |
4101159 |
ttgacatattctcc |
4101172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 4129409 - 4129681
Alignment:
| Q |
9 |
gaaacaaataataatcgtactactacaatcaaacctcaaggaacacaatggaaaaatttagatcttgatcctaagttgtattattatagagcaacgcttg |
108 |
Q |
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| T |
4129409 |
gaaacaaataaaaatggtactactagaatcatacctcagggtacacaatggaaaaatttagatcttgatcctaagttgtattattatagagcaacacttg |
4129508 |
T |
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| Q |
109 |
attattatggagttttgacacaatattatcatccaagggacactaaagcaaaacatggatggactattatgaggtatgttcctgataacatctgcactgc |
208 |
Q |
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| T |
4129509 |
attattatggagttttgacacaatattctcatccaagggacactaaagcaaaacaaggatggactattatgaggtatgttcctgataacatttgcattgc |
4129608 |
T |
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| Q |
209 |
tatatccaatgaaatgggaagtggaacttgtggctataatagctattgttccatggaaaatcagagacctact |
281 |
Q |
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| T |
4129609 |
aatattcaatgaaatgggtagtggaacttgtggctataatagctattgttccatggaaaatcagagacctact |
4129681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 4106222 - 4106494
Alignment:
| Q |
9 |
gaaacaaataataatcgtactactacaatcaaacctcaaggaacacaatggaaaaatttagatcttgatcctaagttgtattattatagagcaacgcttg |
108 |
Q |
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| T |
4106222 |
gaaacaaataaaaatggtactactagaatcaaacctcagggtacacaatggaaaaatttagatcttgatcctaagttgtattattatagagcaatacttg |
4106321 |
T |
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| Q |
109 |
attattatggagttttgacacaatattatcatccaagggacactaaagcaaaacatggatggactattatgaggtatgttcctgataacatctgcactgc |
208 |
Q |
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| T |
4106322 |
attattatggagttttgacacaatattctcatccaagggacactaaagcaaaacaaggatggacgattatgaggtatgttcctgataacatttgcattgc |
4106421 |
T |
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| Q |
209 |
tatatccaatgaaatgggaagtggaacttgtggctataatagctattgttccatggaaaatcagagacctact |
281 |
Q |
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| T |
4106422 |
aatattcaatgaaatgggtagtggaacttgtggctataatagctattgttccatggaaaatcagagacctact |
4106494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 4109382 - 4109454
Alignment:
| Q |
286 |
ttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttattta |
358 |
Q |
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| T |
4109382 |
ttatcaaaagtgctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttattta |
4109454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 368 - 421
Target Start/End: Original strand, 4138504 - 4138557
Alignment:
| Q |
368 |
tttccctcattatgcaaattcttctcactacgagatgctctcgacatattctcc |
421 |
Q |
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| T |
4138504 |
tttccctcattctgcaaattcttctcactacgagatgctcttgacatattctcc |
4138557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 4132567 - 4132637
Alignment:
| Q |
286 |
ttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttatt |
356 |
Q |
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| T |
4132567 |
ttatcaaaagagccattgtgttcaacacaaactttcgggggcacattctcagacctgacttcgtctttatt |
4132637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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