View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710R-Insertion-20 (Length: 418)
Name: NF2710R-Insertion-20
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 9 - 418
Target Start/End: Original strand, 5445146 - 5445555
Alignment:
| Q |
9 |
cattgaccttggtacaagctacagctgcattgcagtgtggcgaaacaatcgtgttgagatcattccaaacgaccaagggaaccgtgtcaccccttcttac |
108 |
Q |
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| T |
5445146 |
cattgaccttggtacaagctacagctgcattgcagtgtggcgaaacaatcgtgttgagatcattccaaacgaccaagggaaccgtgtcaccccttcttac |
5445245 |
T |
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| Q |
109 |
gttgccttcaccgacactgaaagattaataggcgatgctgccaaaaaccaattagccaaaaatccccacaacactgtttttgatgccaaacgtctgattg |
208 |
Q |
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| T |
5445246 |
gttgccttcactgacactgaaagattaataggcgatgctgccaaaaaccaattagccaaatatccccacaacactgtttttgatgccaaacgtctgattg |
5445345 |
T |
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| Q |
209 |
gccgtcgattctctgaccaaacagtccaacaagacataaagctttggccttttaaagttgttccgaaccacaaagacaaacccatgattgttgtcaatta |
308 |
Q |
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| T |
5445346 |
gccgtcgattctctgaccaaacagtccaacaagacataaagctttggccttttaaagttgttccgaaccacaaagacaaacccatgattgttgtcaatta |
5445445 |
T |
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| Q |
309 |
caaaggccaagagaaacatttttcacctcaagagatatcttccatggtgttgtctaagttaaaggaagttgctgaaacttatttgggtcatgaagtgaac |
408 |
Q |
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| T |
5445446 |
caaaggccaagagaaacatttttcacctcaagagatatcttccatggtgttgtctaagttaaaggaagttgctgaaacttatttgggtcatgaagtgaac |
5445545 |
T |
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| Q |
409 |
aatgctgtta |
418 |
Q |
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| T |
5445546 |
aatgctgtta |
5445555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 5441061 - 5440993
Alignment:
| Q |
17 |
ttggtacaagctacagctgcattgcagtgtggcgaaacaatcgtgttgagatcattccaaacgaccaag |
85 |
Q |
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| T |
5441061 |
ttggcacaacctacagctgcatttgagagtggcaacacaatcatgttgagatcattccaaacgaccaag |
5440993 |
T |
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