View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710R-Insertion-21 (Length: 412)
Name: NF2710R-Insertion-21
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 412
Target Start/End: Complemental strand, 36111113 - 36110715
Alignment:
| Q |
10 |
atatgatacctataattacatcaaattatctaattttctcaaattatgaacgatgtcagcat-----tgtccgtgtcgtatcatgtgtgtttgtgtcgat |
104 |
Q |
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| T |
36111113 |
atataatatctataattacatcaaattacttgattttctcaaattatgaatgatgtcagtatgctgatgtccgtgtcgtatcctgtgtgtctgtgtcg-- |
36111016 |
T |
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| Q |
105 |
gcaattgcgtttctaaataatcagaagctgaaaatgaagggtgaccgatctcactctcaatactcacaagctagtggctacaacaaagccccacggttgt |
204 |
Q |
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| T |
36111015 |
-------cgtttctaaataatcagaagctgaaaatgaagggtgaccgatctcactctcaatactcacaagctagtggctacaacaaagccccacggttgt |
36110923 |
T |
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| Q |
205 |
cttgtgcacgtaacacacgacattccacgtggttggatgcatgttcttccacacataaaagccacacaaaaaacatatattgacatggttttgcacacaa |
304 |
Q |
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| T |
36110922 |
cttgtgcacgtaacacacgacattccacgtggttggatgcatgttcttccacacataaaagccacacaaaaaacatatattgacatggttttgcacacaa |
36110823 |
T |
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| Q |
305 |
atagccacgcggtgccagcgatttcctcgttcattcatcctcttcctaagtcaatgtcacttgttgtttctacataatttgtctcatctcaatgtagtgc |
404 |
Q |
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| T |
36110822 |
atagccacgcggtgccagcgattttctcgttcattcatcctcttcctaagtcaatgtcacttgttgtttctacataatttgtctcatctcaatgtagtgt |
36110723 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 32724111 - 32724157
Alignment:
| Q |
20 |
tataattacatcaaattatctaattttctcaaattatgaacgatgtc |
66 |
Q |
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| T |
32724111 |
tataattacattaaattatgtaaatttctcaaattattaacgatgtc |
32724157 |
T |
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