View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710R-Insertion-23 (Length: 385)
Name: NF2710R-Insertion-23
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-23 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 32158264 - 32157887
Alignment:
| Q |
8 |
attgtcgaccatggttgatccagttggtaagatatgacacatggcttcaaaatatttacctgtgagggcattggttcgaaatagttgatccggttggtaa |
107 |
Q |
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| T |
32158264 |
attgtcgaccatggttgatccagttggtaagatatgacacatggcttcaaaatatttacatgtgagggcattggttcgaaatagttgatccagttggtaa |
32158165 |
T |
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| Q |
108 |
gatatgatacatatgtaattactctttagtccatgatgtctatccagaacatggagattctttgagattcaactcacctaaacttttaaatatataatga |
207 |
Q |
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| T |
32158164 |
gatatgatacatatgtaattactctttagtccatgatgtctatccagaacatggagactctttgagatccaactcacctaaacttttatatatatgatga |
32158065 |
T |
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| Q |
208 |
aattactgcaaggttgcatctatgccgagagaccacttgaatgcaattctatgatattattttgttcatgtcaaatatttgttagaaactagttataata |
307 |
Q |
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| T |
32158064 |
aattactgcaaggttgcatctatgccgagagaccacttgaatgtaattgtatgatattattttgttcatgtcaaatatttgttagaaactagttataata |
32157965 |
T |
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| Q |
308 |
ataacattattttaaactaatgtttgtgataatttttctacagatgacactttcaggactattgaatgcgacagatgg |
385 |
Q |
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| T |
32157964 |
ataacataattttaaactaatgtttgtgataatttttctacagatgacactttcgggactattgaatgcgacagatgg |
32157887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 276 - 376
Target Start/End: Complemental strand, 32110703 - 32110602
Alignment:
| Q |
276 |
tgtcaaatatttgttagaaactagttataataataacattattttaaactaatgtttgt-gataatttttctacagatgacactttcaggactattgaat |
374 |
Q |
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| T |
32110703 |
tgtcaactatttttcagaaaatagttataatgatgacattattttaaactaatgtttgttgatactttttcaacagatgacactttcaggactattgaat |
32110604 |
T |
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| Q |
375 |
gc |
376 |
Q |
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|| |
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| T |
32110603 |
gc |
32110602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 32211879 - 32211933
Alignment:
| Q |
323 |
actaatgtttgt-gataatttttctacagatgacactttcaggactattgaatgc |
376 |
Q |
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| T |
32211879 |
actaatgtttgttggtaatttttctacagatgacactttcgggactattgaatgc |
32211933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 32182677 - 32182639
Alignment:
| Q |
347 |
acagatgacactttcaggactattgaatgcgacagatgg |
385 |
Q |
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| T |
32182677 |
acaggtgacactttcaggactattgaatgcgacagatgg |
32182639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 32156826 - 32156786
Alignment:
| Q |
336 |
ataatttttctacagatgacactttcaggactattgaatgc |
376 |
Q |
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| T |
32156826 |
ataatttgtcaacaggtgacactttcaggactattgaatgc |
32156786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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