View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710R-Insertion-29 (Length: 265)
Name: NF2710R-Insertion-29
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-29 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 31408747 - 31408967
Alignment:
| Q |
9 |
taaagaaccccggaggggggtatggaattgaaaggcg-catgcagcttcctgatgtatgaacacgactacacaactgagcgaggtatttacaaacttacg |
107 |
Q |
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| T |
31408747 |
taaagaaccccggatggcggtatggaattgaaaggcggcatgcaggttcctgatgtatgaacacgactacacaactgagcgaagtatttacaaacttacg |
31408846 |
T |
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| Q |
108 |
cagaaaatcacgttggatgagccacaagagcttagctggttcaaaggccacatcatcgccctacaaaatatccaaatattc-------aagcaattatca |
200 |
Q |
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| T |
31408847 |
cagaaaatcacgttggatgagccacaagagcttagctggttcaaaggccacatcatcgccctacaaaatatccaaatattcaaaacaaaagcaattatca |
31408946 |
T |
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| Q |
201 |
tcgacaattttacgtgaaatt |
221 |
Q |
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| T |
31408947 |
tcgacaattttaagttaaatt |
31408967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 31408988 - 31409020
Alignment:
| Q |
233 |
ataaagattagatgaatggagacaatattcagg |
265 |
Q |
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| T |
31408988 |
ataaagattagataaatggagacaatattcagg |
31409020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 38492384 - 38492309
Alignment:
| Q |
100 |
aacttacgcagaaaatcacgttggatgagccacaagagcttagctggttcaaaggccacatcatcgccctacaaaa |
175 |
Q |
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| T |
38492384 |
aacttacgcagaaaatcacgttggataagccacaagagcttggcaggttcaaatgcaacatcctggccctataaaa |
38492309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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