View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2710R-Insertion-30 (Length: 263)

Name: NF2710R-Insertion-30
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2710R-Insertion-30
NF2710R-Insertion-30
[»] chr2 (3 HSPs)
chr2 (9-127)||(15783549-15783670)
chr2 (218-263)||(15783419-15783464)
chr2 (218-259)||(25235264-25235305)
[»] chr8 (1 HSPs)
chr8 (221-263)||(44428551-44428593)
[»] chr4 (4 HSPs)
chr4 (221-263)||(26603386-26603428)
chr4 (221-263)||(49355412-49355454)
chr4 (222-263)||(54866903-54866944)
chr4 (218-260)||(37061669-37061711)
[»] chr3 (5 HSPs)
chr3 (221-263)||(9373438-9373480)
chr3 (221-263)||(9373942-9373984)
chr3 (221-263)||(46489272-46489314)
chr3 (222-263)||(51656525-51656566)
chr3 (221-257)||(36006474-36006510)
[»] chr1 (4 HSPs)
chr1 (221-263)||(20130607-20130649)
chr1 (221-263)||(21056223-21056265)
chr1 (222-259)||(33373635-33373672)
chr1 (222-263)||(35598898-35598939)
[»] chr7 (1 HSPs)
chr7 (222-263)||(34989400-34989441)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 15783670 - 15783549
Alignment:
Q  9 gttggtagtattcttcctcttactgttattttcgttttccatgaatggcttctgtgtagaacaatgtatatctcttggttaaagttaatt--aacacaaa 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||| ||||    
T  15783670 gttggtagtattcttcctcttactattattttcgttttccatgaatggcttctgtgtagaacaatgtatatctcttggttcaagttaattcgaacccaaa 15783571  T
Q  107 attttggcct-gttttaaccta 127  Q
    |||||| ||| |||||||||||    
T  15783570 attttgccctagttttaaccta 15783549  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 15783464 - 15783419
Alignment:
Q  218 cttctaatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  15783464 cttctaatttttctccttaattttactaaacaaataaacaaatcct 15783419  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 25235264 - 25235305
Alignment:
Q  218 cttctaatttttctcgttaattttattaaacaaataaacaaa 259  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  25235264 cttctaatttttctccttaattttactaaacaaataaacaaa 25235305  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 44428551 - 44428593
Alignment:
Q  221 ctaatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  44428551 ctaatttttctccttaattttactaaacaaataaacaaatcct 44428593  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 26603428 - 26603386
Alignment:
Q  221 ctaatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  26603428 ctaatttttctccttaattttactaaacaaataaacaaatcct 26603386  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 49355412 - 49355454
Alignment:
Q  221 ctaatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  49355412 ctaatttttctccttaattttactaaacaaataaacaaatcct 49355454  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 54866903 - 54866944
Alignment:
Q  222 taatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    ||||||||||| ||||||||| ||||||||||||||||||||    
T  54866903 taatttttctccttaattttactaaacaaataaacaaatcct 54866944  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 37061669 - 37061711
Alignment:
Q  218 cttctaatttttctcgttaattttattaaacaaataaacaaat 260  Q
    ||||||||||||||| ||||||||| || ||||||||||||||    
T  37061669 cttctaatttttctccttaattttactagacaaataaacaaat 37061711  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 9373480 - 9373438
Alignment:
Q  221 ctaatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  9373480 ctaatttttctccttaattttactaaacaaataaacaaatcct 9373438  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 9373984 - 9373942
Alignment:
Q  221 ctaatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  9373984 ctaatttttctccttaattttactaaacaaataaacaaatcct 9373942  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 46489314 - 46489272
Alignment:
Q  221 ctaatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  46489314 ctaatttttctccttaattttactaaacaaataaacaaatcct 46489272  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 51656525 - 51656566
Alignment:
Q  222 taatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    ||||||||||| ||||||||| ||||||||||||||||||||    
T  51656525 taatttttctccttaattttactaaacaaataaacaaatcct 51656566  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 36006510 - 36006474
Alignment:
Q  221 ctaatttttctcgttaattttattaaacaaataaaca 257  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  36006510 ctaatttttctccttaattttactaaacaaataaaca 36006474  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 20130649 - 20130607
Alignment:
Q  221 ctaatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||    
T  20130649 ctaatttttctccttagttttactaaacaaataaacaaatcct 20130607  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 21056223 - 21056265
Alignment:
Q  221 ctaatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||    
T  21056223 ctaatttttctccttaattttactaaacaaataagcaaatcct 21056265  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 33373635 - 33373672
Alignment:
Q  222 taatttttctcgttaattttattaaacaaataaacaaa 259  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  33373635 taatttttctccttaattttactaaacaaataaacaaa 33373672  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 35598898 - 35598939
Alignment:
Q  222 taatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    ||||||||||| ||||||||| |||| |||||||||||||||    
T  35598898 taatttttctccttaattttactaaataaataaacaaatcct 35598939  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 263
Target Start/End: Complemental strand, 34989441 - 34989400
Alignment:
Q  222 taatttttctcgttaattttattaaacaaataaacaaatcct 263  Q
    ||||||||||| ||||||||| |||| |||||||||||||||    
T  34989441 taatttttctccttaattttactaaagaaataaacaaatcct 34989400  T

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