View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2710R-Insertion-31 (Length: 254)

Name: NF2710R-Insertion-31
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2710R-Insertion-31
NF2710R-Insertion-31
[»] chr5 (3 HSPs)
chr5 (9-250)||(10255986-10256227)
chr5 (9-225)||(10238406-10238622)
chr5 (9-235)||(10229616-10229842)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 10255986 - 10256227
Alignment:
Q  9 agccgtttttcgtggcgagggaggatggtgatgaagaggatgatggttatttagtgagttatgttcatgatgagaagaagggagagtctaagtttttggt 108  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  10255986 agccgtttttcgtggcgagggaggatggtgaagaagaggatgatggttatttagtgagttatgtgcatgatgagaaaaagggagagtctaagtttttggt 10256085  T
Q  109 gatggatgctaagtcgccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10256086 gatggatgctaagtcgccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgac 10256185  T
Q  209 atcaccaagttgtcggtgtcgtagggatgaagacatagttct 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10256186 atcaccaagttgtcggtgtcgtagggatgaagacatagttct 10256227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 10238622 - 10238406
Alignment:
Q  9 agccgtttttcgtggcgagggaggatggtgatgaagaggatgatggttatttagtgagttatgttcatgatgagaagaagggagagtctaagtttttggt 108  Q
    |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||    
T  10238622 agccgtttttcgtggctagggaagatggtgaggaagaggatgatggttatttagtgagttatgtgcatgatgagaagaagggagagtcaaggtttttggt 10238523  T
Q  109 gatggatgctaagtcgccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgac 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10238522 gatggatgctaagtctccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgac 10238423  T
Q  209 atcaccaagttgtcggt 225  Q
    ||||| | |||||||||    
T  10238422 atcacgaggttgtcggt 10238406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 9 - 235
Target Start/End: Complemental strand, 10229842 - 10229616
Alignment:
Q  9 agccgtttttcgtggcgagggaggatggtgatgaagaggatgatggttatttagtgagttatgttcatgatgagaagaagggagagtctaagtttttggt 108  Q
    |||||||||||||||||| ||| | |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  10229842 agccgtttttcgtggcgatggaaggtggtgaggaagaggatgatggttatttagtgagttatgtgcatgatgagaagaagggagaatctaagtttttggt 10229743  T
Q  109 gatggatgctaagtcgccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgac 208  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||  | ||||||    
T  10229742 gatggatgcgaagtcgccagagtttgagattgtggcggaggtgaagttgccgaggagggtgccctatggttttcatggattgtttgtgaagcaaagtgac 10229643  T
Q  209 atcaccaagttgtcggtgtcgtaggga 235  Q
    || ||||||||||||||||||||||||    
T  10229642 ataaccaagttgtcggtgtcgtaggga 10229616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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