View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710R-Insertion-6 (Length: 872)
Name: NF2710R-Insertion-6
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 9 - 691
Target Start/End: Original strand, 34836584 - 34837275
Alignment:
| Q |
9 |
ttttgtatctcatatatgtactccatcgtacacctcaaaaggaagaatggaaaaataaaataaactcataatgtgaaaattataggaatgttgatgatgt |
108 |
Q |
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| T |
34836584 |
ttttgtatctcatatatgtactccatcgtacacctcaaaaggaagaatggaaaaataaaataaactcataatgtgaaaattataggaatgttgatgatgt |
34836683 |
T |
|
| Q |
109 |
tgtattgagaatgaa---------ctcaaatatagcgattaaatctaagatgcaaaagcatgatatatagggacccagtacacaatgttacattatgtgc |
199 |
Q |
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| T |
34836684 |
tgtattgagaatgaacaatctgaactcaaatataccgattaaatctaagatgcaaaagcatcatatatagggacccagtacacaatgttaaattatgtgc |
34836783 |
T |
|
| Q |
200 |
atgaagcaagatgaagactatatggctcctctttgtatgatataagttggggggaaactgtgatgtggtcctatgttacatggaaaactggttgtgtgga |
299 |
Q |
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| T |
34836784 |
atgaagcaagatgaagactgtatggctcctctttgtatgatataagttggggggaaactgtgatgtggtcctatgttacatggaaaactggttgtgtgga |
34836883 |
T |
|
| Q |
300 |
ccatttgaattgacaaatcaacttgggcattggcttcacacaaaaagttccatctcttctttgatgattgagactcccatgtttctctcttcccacttct |
399 |
Q |
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| T |
34836884 |
ccatttgaattgacaaatcaacttgggcattggcttcacacaaaaagttccatctcttctttgatgattgagactcccatgtttctctcttcccacttct |
34836983 |
T |
|
| Q |
400 |
tgaaagtgagagccaattaaagacacttcttaactagtgacgaaccgtatatgttcagatccttttgttcacaccattaaataacctgcagaatatgtac |
499 |
Q |
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| T |
34836984 |
tgaaagtgagagccaattaaagacacttcttaactagtgacgaaccgtatatgttcagatccttttgttcacaccattaaataacctgcagaatatgtac |
34837083 |
T |
|
| Q |
500 |
tatatatgatgcatataggctagttaaaataaaacgagaaagtgtgaaagattaaaatatcataccaagaacggtactcaagcaaatataaaaaattacg |
599 |
Q |
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| T |
34837084 |
tacatatgatgcatataggctagttaaaataaaacgagaaagtgtgaaagattaaaatatcataccaagaacggtactcaagcaaatataaaaaattacg |
34837183 |
T |
|
| Q |
600 |
ggtattcgtgttttggattagattttcttttgttaatcatctgattattaaagaaatagactctagtaatctgaaatttggatgggaagtaa |
691 |
Q |
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| T |
34837184 |
ggtattcgcgttttggtttagattttcttttgttaatcatttggttattaaaaaaatagactctaataatctgaagtttagttgagaagtaa |
34837275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 633 - 855
Target Start/End: Original strand, 34837277 - 34837499
Alignment:
| Q |
633 |
taatcatctgattattaaagaaatagactctagtaatctgaaatttggatgggaagtaagtaaagtcagaacaaatattgtttcactcaaaaatcgtact |
732 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34837277 |
taatcatttgattattaaagaaatagactctagtaatttgaagtttggatgagaagtaagtaaagtcagaacaaatattgtttcactcaaaaattgtact |
34837376 |
T |
|
| Q |
733 |
tgatttttctcaaacaattcgttctaaaatgaagtttattaatcatttgatcttaatagacaagtcatctatttc-aagaatataaaatagtattttaat |
831 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| || |
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| T |
34837377 |
cgatttttctcaaacaattcgttctaaagtgaagtttattaatcatttgatcttaatagacaagtcatatatttcaaagaatataaaatagcatttt-at |
34837475 |
T |
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| Q |
832 |
ttaatttgcattgtgcttttaaaa |
855 |
Q |
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| T |
34837476 |
ttaatttgcattgtgcttttaaaa |
34837499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 703 - 754
Target Start/End: Complemental strand, 13872299 - 13872248
Alignment:
| Q |
703 |
acaaatattgtttcactcaaaaatcgtacttgatttttctcaaacaattcgt |
754 |
Q |
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||||| |||||||||| |||||||||||||||| ||||| |||| ||||||| |
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| T |
13872299 |
acaaaaattgtttcacccaaaaatcgtacttgagttttcccaaataattcgt |
13872248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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