View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710R-Insertion-9 (Length: 721)
Name: NF2710R-Insertion-9
Description: NF2710R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710R-Insertion-9 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 386
Target Start/End: Original strand, 6262518 - 6262897
Alignment:
| Q |
8 |
actaattacaataatggatgattattcaagatttagtttcccttaaataggatgtttcagtagattaatttatgttgcaagaaatttttattttcaaatg |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6262518 |
actaattacaataatggatgattattcaagatttagtttcccttaaataggatgtttcagtagattaatttatgttgcaagaaatttttattttcaaatg |
6262617 |
T |
|
| Q |
108 |
taacaatgttacatcttttataagtgaggagattcaagtttcaagttattcatttcaaaattggtatccaaagtctatacacatataagtgtataactat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6262618 |
taacaatgttacatcttttataagtgaggagattcaagtttcaagttattcatttcaaaattggtatccaaagtctatacacatataagtgtataactat |
6262717 |
T |
|
| Q |
208 |
tattcattagtaatgcattacaagttatgtcttgaattaactaaaccactc----atagttctctatacatatatgatgattcctaattaacaccgaaaa |
303 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6262718 |
tattcattagtaatgcattaca---tatgtcttgaattaactaaaccactcatatatagttctctatacatatatgatgattcctaattaacaccgaaaa |
6262814 |
T |
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| Q |
304 |
acaatattctaaaaaccaaactagacaatgaaccgatgagacctttcgattatgattcaagtgttttaaatccaaacggaaag |
386 |
Q |
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| T |
6262815 |
ccaatattctaaaaaccaaactagacaatgaaccgatgagacctttcgattatgattcaagtgttttaaatccaaacggaaag |
6262897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 489 - 721
Target Start/End: Original strand, 6263000 - 6263232
Alignment:
| Q |
489 |
tgacatccacaactcctagttcatatgggaaaaatgtctatattattaggctggatattgtgatcggaactcaaaaccggattcctccagacaagtggag |
588 |
Q |
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| T |
6263000 |
tgacatccacaactcctagttcatatgggaaaaatgtctatattattaggctggatatagtgatcggaactcaaaattggattcctccagacaagtggag |
6263099 |
T |
|
| Q |
589 |
gaatgctcaaatcactattatcattttatctatctnnnnnnnctaattaaaattaaagttgacggatccatgatccatcaaacgtgattagctcttgttt |
688 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6263100 |
gaatgctcaaatgactattgtcattttatctatctaaaaaaactaattaaaattaaagttgacagatccatgatccatcaaacgtgattagctcttgttt |
6263199 |
T |
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| Q |
689 |
gctgcatccttcacagaatcaacaactccttgt |
721 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6263200 |
gctgcatccttcacagaatcaacaactccttgt |
6263232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 6270956 - 6271044
Alignment:
| Q |
123 |
ttttataagtgaggagattcaagtttcaagttattcatttcaaaattggtatccaaagtctatacacatataagtgtataactattatt |
211 |
Q |
| |
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|||||| |||||| ||||||||||||||| ||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
6270956 |
ttttattagtgagtagattcaagtttcaaattattcatttccgaattagtatccaaaatctatacacatatcagtgtataactattatt |
6271044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 6258065 - 6258206
Alignment:
| Q |
8 |
actaattacaataatggatgattattcaagatttagtttcccttaaataggatg-tttcagtagattaatttatgttgcaagaaatttttattttcaaat |
106 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||| | ||| |||||| ||||||||| ||||||||| |||| |
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| T |
6258065 |
actaattaaaataatggatgattattcaagatttagtttccctaaaataaaatgtttttggctgatccatttattttgcaagaacgttttatttt-aaat |
6258163 |
T |
|
| Q |
107 |
gtaacaatgttacatcttttataagtgaggagattcaagtttca |
150 |
Q |
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|||| | |||| ||| || ||| |||||| |||||||||||||| |
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| T |
6258164 |
gtaatagtgttgcat-ttgtattagtgagtagattcaagtttca |
6258206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 6278840 - 6278950
Alignment:
| Q |
94 |
tttattttcaaatgtaacaatgttacatcttttataagtgaggagattcaagtttcaagtta-ttcatttcaaaattggtatccaaagtctatacacata |
192 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| ||||| ||||||||||||||| ||| || ||||| ||||||| |||||| ||||||||| | |
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| T |
6278840 |
tttattttcaaatgtaataatgttacat-ttttatcggtgagtagattcaagtttcaaattatttaatttccgaattggtttccaaaatctatacac--a |
6278936 |
T |
|
| Q |
193 |
taagtgtataacta |
206 |
Q |
| |
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||||||||||||| |
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| T |
6278937 |
aaagtgtataacta |
6278950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 6246439 - 6246541
Alignment:
| Q |
8 |
actaattacaataatggatgattattcaagatttagtttcccttaaataggatgtttcag--tagattaatttatgttgcaagaaatttttattttcaaa |
105 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| | ||| || |||||| ||||||||| |||||||||| ||| |
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| T |
6246439 |
actaattacaatatttgatgattattcaagatttagtttcccttaaataaaatgttttcggctag-ttcatttattttgcaagaactttttatttt-aaa |
6246536 |
T |
|
| Q |
106 |
tgtaa |
110 |
Q |
| |
|
||||| |
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| T |
6246537 |
tgtaa |
6246541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 6251650 - 6251698
Alignment:
| Q |
8 |
actaattacaataatggatgattattcaagatttagtttcccttaaata |
56 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
6251650 |
actaattacaataatgaatgattattcacgatttagtttcccttaaata |
6251698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 6283678 - 6283809
Alignment:
| Q |
20 |
aatggatgattattcaagatttagtttcccttaaataggatgt-ttcag-tagattaatttatgttgcaagaaatttttattttcaaatgtaacaatgtt |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| || | ||||| ||| |||| || | ||||||||| |||||||||||||||||| |||||| |
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| T |
6283678 |
aatggatgattatggcagatttagtttcccttaaataaaatatgttcagatag-ttaactttttttgcaagaacattttattttcaaatgtaataatgtt |
6283776 |
T |
|
| Q |
118 |
acatcttttataagtgaggagattcaagtttcaa |
151 |
Q |
| |
|
|||| |||||| || || ||||||||||||||| |
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|
| T |
6283777 |
acat-ttttattagctagaagattcaagtttcaa |
6283809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 6237327 - 6237375
Alignment:
| Q |
8 |
actaattacaataatggatgattattcaagatttagtttcccttaaata |
56 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| ||||||||||||| |
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|
| T |
6237327 |
actaattacaataatggatgactgttcaagatttaatttcccttaaata |
6237375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 637 - 720
Target Start/End: Original strand, 6279371 - 6279454
Alignment:
| Q |
637 |
aaaattaaagttgacggatccatgatccatcaaacgtgattagctcttgtttgctgcatccttcacagaatcaacaactccttg |
720 |
Q |
| |
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||||| ||| ||||||||| || ||| |||||||| | ||||| || |||||| ||||||||| ||||||||||||||||||| |
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| T |
6279371 |
aaaataaaaattgacggattcaggattcatcaaacataattagttcctgtttgttgcatcctttgcagaatcaacaactccttg |
6279454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 6252125 - 6252186
Alignment:
| Q |
318 |
accaaactagacaatgaaccgatgagacctttcgattatgattcaagtgttttaaatccaaa |
379 |
Q |
| |
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|||||||||| || ||||||| ||||| || ||||| |||||||||||||||||||||||| |
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|
| T |
6252125 |
accaaactaggcattgaaccgttgagaactctcgatcttgattcaagtgttttaaatccaaa |
6252186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 659 - 720
Target Start/End: Original strand, 6252412 - 6252473
Alignment:
| Q |
659 |
tgatccatcaaacgtgattagctcttgtttgctgcatccttcacagaatcaacaactccttg |
720 |
Q |
| |
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||||||||||||| | ||||| ||||||||| | ||||||| ||||||||||| ||||||| |
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| T |
6252412 |
tgatccatcaaacataattagttcttgtttgtagaatccttcgcagaatcaacagctccttg |
6252473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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