View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710_high_10 (Length: 410)
Name: NF2710_high_10
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 4100760 - 4101147
Alignment:
| Q |
18 |
gaaacaaataataatcgtactactacaatcaaacctcaaggaacacaatggaaaaatttagatcttgatcctaagttgtattattatagagcaacgcttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
4100760 |
gaaacaaataataatcgtactactacaatcaaacctcaaggtacacaatggaaaaatttagatcttgatcctaagttgtattattatagaggaacacttg |
4100859 |
T |
|
| Q |
118 |
attattatggagttttgacacaatattatcatccaagggacactaaagcaaaacatggatggactattatgaggtatgttcctgataacatctgcactgc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4100860 |
attattatggagttttgacacaatattatcatccaagggacactaaagcaaaacaaggatggactattatgaggtatgttcctgataacatctgcactgc |
4100959 |
T |
|
| Q |
218 |
tatatccaatgaaatgggaagtggaacttgtggctataatagctattgttccatggaaaatcagagacctac-tgtggttatcaatagagctattgtgtt |
316 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4100960 |
tatattcaatgaaatgggtagtggaacttgtggctataatagctattgttccatggaaaatcagagacctacttgtggttatcaatagagctattgtgtt |
4101059 |
T |
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| Q |
317 |
gaacacaaactttcggttgcacattctcggaccggccttcatctttatttacctccactgtttccctcattatgcaaattcatctcact |
405 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |
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| T |
4101060 |
gaacacaaactttcggttacacattctcggaccggccttcatctttatttacct-cactgtttcccttattatgcaaattcttctcact |
4101147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 4129409 - 4129681
Alignment:
| Q |
18 |
gaaacaaataataatcgtactactacaatcaaacctcaaggaacacaatggaaaaatttagatcttgatcctaagttgtattattatagagcaacgcttg |
117 |
Q |
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||||||||||| ||| ||||||||| ||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4129409 |
gaaacaaataaaaatggtactactagaatcatacctcagggtacacaatggaaaaatttagatcttgatcctaagttgtattattatagagcaacacttg |
4129508 |
T |
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| Q |
118 |
attattatggagttttgacacaatattatcatccaagggacactaaagcaaaacatggatggactattatgaggtatgttcctgataacatctgcactgc |
217 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
4129509 |
attattatggagttttgacacaatattctcatccaagggacactaaagcaaaacaaggatggactattatgaggtatgttcctgataacatttgcattgc |
4129608 |
T |
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| Q |
218 |
tatatccaatgaaatgggaagtggaacttgtggctataatagctattgttccatggaaaatcagagacctact |
290 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129609 |
aatattcaatgaaatgggtagtggaacttgtggctataatagctattgttccatggaaaatcagagacctact |
4129681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 4106222 - 4106494
Alignment:
| Q |
18 |
gaaacaaataataatcgtactactacaatcaaacctcaaggaacacaatggaaaaatttagatcttgatcctaagttgtattattatagagcaacgcttg |
117 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4106222 |
gaaacaaataaaaatggtactactagaatcaaacctcagggtacacaatggaaaaatttagatcttgatcctaagttgtattattatagagcaatacttg |
4106321 |
T |
|
| Q |
118 |
attattatggagttttgacacaatattatcatccaagggacactaaagcaaaacatggatggactattatgaggtatgttcctgataacatctgcactgc |
217 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||| ||| |
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| T |
4106322 |
attattatggagttttgacacaatattctcatccaagggacactaaagcaaaacaaggatggacgattatgaggtatgttcctgataacatttgcattgc |
4106421 |
T |
|
| Q |
218 |
tatatccaatgaaatgggaagtggaacttgtggctataatagctattgttccatggaaaatcagagacctact |
290 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4106422 |
aatattcaatgaaatgggtagtggaacttgtggctataatagctattgttccatggaaaatcagagacctact |
4106494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 4109382 - 4109454
Alignment:
| Q |
295 |
ttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttattta |
367 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4109382 |
ttatcaaaagtgctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttattta |
4109454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 4132567 - 4132637
Alignment:
| Q |
295 |
ttatcaatagagctattgtgttgaacacaaactttcggttgcacattctcggaccggccttcatctttatt |
365 |
Q |
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||||||| ||||| |||||||| ||||||||||||||| |||||||||| |||| | |||| |||||||| |
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| T |
4132567 |
ttatcaaaagagccattgtgttcaacacaaactttcgggggcacattctcagacctgacttcgtctttatt |
4132637 |
T |
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