View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710_high_11 (Length: 392)
Name: NF2710_high_11
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 39170586 - 39170957
Alignment:
| Q |
1 |
aaggaagggactaatctgaattgcttataatttagttgcctctaacacatgatctctttatttggaaaattgtccttattagtggcagacctgctaaaac |
100 |
Q |
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| T |
39170586 |
aaggaagagactaatctgaattgcttataatttagttgcctctgacacatgatctctttatttggaaaattgtctttattagtggcagacctgctaaaac |
39170685 |
T |
|
| Q |
101 |
ctaaaccgatcgaataggatgatgtcctcaacatgcatctccacattttctatactatagtcagcagcagcactatgtgtgtattcaaataaataaacat |
200 |
Q |
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| T |
39170686 |
ctaaaccgatcgaataggatgatgtcctcaacatgcatctccacattttctatactatagtcagcagcagcactatgtgtgtattcaaataaataaac-- |
39170783 |
T |
|
| Q |
201 |
aacctaaaaatcataaattcaattactttgtacttgtaccggtctctattctactaatgtgtaggattctaattatatacatacatcgttctacaatgac |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39170784 |
aacctaaaaatcataaattcaattactttgaacttgtaccggtctctattctactaatgtgtaggattctaattatatacatacatcgttctacaatgac |
39170883 |
T |
|
| Q |
301 |
aataactaatttaagtttaattagtataccttgttggtatacaattattttcaatgttgtcatacacatgagtt |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39170884 |
aataactaatttaagtttaattagtataccttgttggtgtacaattattttcaatgttgtcatacacatgagtt |
39170957 |
T |
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