View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2710_high_13 (Length: 383)

Name: NF2710_high_13
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2710_high_13
NF2710_high_13
[»] chr7 (18 HSPs)
chr7 (50-364)||(15873103-15873417)
chr7 (50-364)||(10287917-10288232)
chr7 (49-364)||(11035507-11035824)
chr7 (32-364)||(13163377-13163714)
chr7 (50-364)||(12910867-12911172)
chr7 (52-364)||(12195886-12196195)
chr7 (58-358)||(22078399-22078687)
chr7 (51-364)||(40106577-40106880)
chr7 (50-364)||(21490614-21490929)
chr7 (225-364)||(48653131-48653269)
chr7 (225-364)||(49169641-49169780)
chr7 (50-364)||(18366460-18366767)
chr7 (53-257)||(3692152-3692357)
chr7 (229-364)||(9994087-9994220)
chr7 (157-250)||(24053069-24053164)
chr7 (45-121)||(49169485-49169561)
chr7 (323-364)||(9554543-9554584)
chr7 (298-330)||(1322294-1322326)
[»] chr6 (11 HSPs)
chr6 (50-364)||(34636952-34637266)
chr6 (50-364)||(32449393-32449707)
chr6 (50-364)||(23259757-23260092)
chr6 (50-364)||(26181816-26182134)
chr6 (146-364)||(10750852-10751070)
chr6 (14-127)||(19814705-19814818)
chr6 (238-364)||(13772725-13772850)
chr6 (49-364)||(24164556-24164863)
chr6 (298-364)||(20559559-20559625)
chr6 (323-360)||(11166052-11166089)
chr6 (333-365)||(31275943-31275975)
[»] chr5 (15 HSPs)
chr5 (50-364)||(537585-537899)
chr5 (146-364)||(6309461-6309681)
chr5 (14-364)||(42862139-42862479)
chr5 (225-364)||(40691641-40691781)
chr5 (59-292)||(42640267-42640498)
chr5 (225-365)||(30910523-30910662)
chr5 (146-365)||(38001743-38001951)
chr5 (52-176)||(4557222-4557350)
chr5 (50-250)||(27027155-27027355)
chr5 (225-311)||(4557364-4557450)
chr5 (50-121)||(40691861-40691932)
chr5 (21-82)||(25043939-25044000)
chr5 (329-364)||(23211214-23211249)
chr5 (50-211)||(38279317-38279480)
chr5 (53-104)||(25674369-25674420)
[»] scaffold0657 (2 HSPs)
scaffold0657 (46-364)||(1460-1779)
scaffold0657 (14-195)||(8540-8721)
[»] chr3 (15 HSPs)
chr3 (50-364)||(46403725-46404041)
chr3 (50-364)||(5003856-5004170)
chr3 (49-365)||(16976082-16976399)
chr3 (58-364)||(7335826-7336133)
chr3 (50-364)||(43277168-43277483)
chr3 (50-364)||(9104863-9105168)
chr3 (50-176)||(17537618-17537751)
chr3 (146-364)||(11937115-11937329)
chr3 (50-250)||(37979833-37980034)
chr3 (298-364)||(8731508-8731575)
chr3 (298-364)||(9083395-9083462)
chr3 (323-364)||(5704681-5704722)
chr3 (49-257)||(3504511-3504718)
chr3 (323-364)||(1461523-1461564)
chr3 (332-364)||(17542113-17542145)
[»] chr1 (23 HSPs)
chr1 (49-364)||(338873-339187)
chr1 (50-364)||(43406494-43406808)
chr1 (50-364)||(37666316-37666620)
chr1 (52-364)||(35761147-35761471)
chr1 (229-364)||(18472249-18472383)
chr1 (48-360)||(6836664-6836968)
chr1 (49-211)||(51442504-51442672)
chr1 (274-364)||(8422322-8422412)
chr1 (52-129)||(19197952-19198029)
chr1 (179-250)||(25647809-25647881)
chr1 (50-133)||(20147830-20147912)
chr1 (150-246)||(33006875-33006972)
chr1 (63-199)||(44781389-44781525)
chr1 (306-364)||(16075468-16075527)
chr1 (326-364)||(19198203-19198241)
chr1 (323-364)||(16111136-16111177)
chr1 (21-82)||(20600489-20600550)
chr1 (323-364)||(24276151-24276192)
chr1 (323-364)||(33007051-33007092)
chr1 (323-364)||(24055667-24055708)
chr1 (323-364)||(33009157-33009198)
chr1 (183-257)||(19198065-19198137)
chr1 (61-102)||(33006746-33006787)
[»] chr2 (21 HSPs)
chr2 (50-364)||(40448246-40448559)
chr2 (52-364)||(44789272-44789589)
chr2 (48-364)||(34396977-34397296)
chr2 (50-203)||(32735251-32735403)
chr2 (225-364)||(40728733-40728871)
chr2 (69-364)||(18291900-18292184)
chr2 (48-366)||(41339389-41339697)
chr2 (225-364)||(35670071-35670208)
chr2 (146-241)||(28266374-28266470)
chr2 (295-364)||(12773805-12773874)
chr2 (323-364)||(28266551-28266592)
chr2 (22-82)||(19713482-19713542)
chr2 (298-360)||(29271352-29271415)
chr2 (323-364)||(23827789-23827830)
chr2 (50-124)||(12773566-12773640)
chr2 (150-211)||(12773675-12773737)
chr2 (325-364)||(11387707-11387746)
chr2 (34-81)||(11388027-11388074)
chr2 (58-187)||(40728576-40728706)
chr2 (292-320)||(27976402-27976430)
chr2 (292-320)||(28062930-28062958)
[»] scaffold0413 (1 HSPs)
scaffold0413 (50-364)||(197-511)
[»] chr4 (11 HSPs)
chr4 (50-364)||(40459716-40460029)
chr4 (63-364)||(28968374-28968679)
chr4 (149-363)||(70066-70278)
chr4 (238-364)||(55162957-55163082)
chr4 (235-363)||(49499822-49499950)
chr4 (106-364)||(2761277-2761535)
chr4 (146-330)||(42898239-42898421)
chr4 (21-326)||(34827864-34828169)
chr4 (50-94)||(70297-70341)
chr4 (323-364)||(10276814-10276855)
chr4 (14-88)||(41951143-41951218)
[»] chr8 (15 HSPs)
chr8 (50-364)||(44436867-44437181)
chr8 (212-364)||(22815622-22815774)
chr8 (50-364)||(40840649-40840966)
chr8 (225-365)||(6150284-6150424)
chr8 (50-364)||(41957597-41957900)
chr8 (50-219)||(22640563-22640735)
chr8 (184-250)||(35841029-35841096)
chr8 (323-364)||(12659338-12659379)
chr8 (324-364)||(35840915-35840955)
chr8 (50-89)||(6161775-6161814)
chr8 (323-360)||(10251009-10251046)
chr8 (50-210)||(26162471-26162631)
chr8 (50-171)||(35841086-35841207)
chr8 (292-320)||(21231121-21231149)
chr8 (25-81)||(29132249-29132305)
[»] scaffold0041 (1 HSPs)
scaffold0041 (151-364)||(32575-32786)
[»] scaffold1838 (2 HSPs)
scaffold1838 (238-358)||(958-1077)
scaffold1838 (149-211)||(1096-1159)
[»] scaffold0013 (2 HSPs)
scaffold0013 (50-257)||(240797-240983)
scaffold0013 (306-364)||(242428-242487)
[»] scaffold0002 (2 HSPs)
scaffold0002 (21-82)||(356046-356107)
scaffold0002 (323-364)||(356362-356403)
[»] scaffold0120 (1 HSPs)
scaffold0120 (323-364)||(2122-2163)
[»] scaffold0028 (1 HSPs)
scaffold0028 (21-81)||(147496-147556)
[»] scaffold0069 (1 HSPs)
scaffold0069 (323-364)||(11463-11504)
[»] scaffold0150 (1 HSPs)
scaffold0150 (21-81)||(34858-34918)
[»] scaffold0006 (1 HSPs)
scaffold0006 (50-82)||(199851-199883)


Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 15873103 - 15873417
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15873103 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttacttcatctatattatattctagc 15873202  T
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873203 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatt 15873302  T
Q  250 tcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaat 349  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15873303 tcgtcccccgtatacacttccagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaat 15873402  T
Q  350 tggttcatactcaaa 364  Q
    |||||||||||||||    
T  15873403 tggttcatactcaaa 15873417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 10287917 - 10288232
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10287917 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatttcatctatattatattatagc 10288016  T
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttc-aaaaatttctactaaagttacaattcaatcaaaaacccaat 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10288017 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaactaatatccttcaaaaaatttctactaaagttacaattcaatcaaaaacccaat 10288116  T
Q  249 ttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaa 348  Q
    |||||||||||||  |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10288117 ttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaa 10288216  T
Q  349 ttggttcatactcaaa 364  Q
    ||||||||||||||||    
T  10288217 ttggttcatactcaaa 10288232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 49 - 364
Target Start/End: Original strand, 11035507 - 11035824
Alignment:
Q  49 atgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaa--cactactatttatttatttcatctatattatattct 146  Q
    ||||||||| |||||||| | ||||||||||||| |||||| ||||||| ||||||||||||  ||||||||||||||||||||||| ||| || |||||    
T  11035507 atgtaacgctccggatttagatccaagacattacacctaaatcattttctttttctgaaaaaaacactactatttatttatttcatcaatagtaaattct 11035606  T
Q  147 -agcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaaccc 245  Q
     ||||||||||||||| ||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11035607 tagcaaaacctatacacaatgcttgacataatttaattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaaccc 11035706  T
Q  246 aatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcc 345  Q
    ||||| |||||| |||  |||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11035707 aattttgtcccc-gtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcc 11035805  T
Q  346 aaattggttcatactcaaa 364  Q
    |||||||||||||||||||    
T  11035806 aaattggttcatactcaaa 11035824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 32 - 364
Target Start/End: Original strand, 13163377 - 13163714
Alignment:
Q  32 attgctctgataccataatgtaacgccccggattttggtccaagacattacgcctaaaccattttcctttt--ctg--aaaaacactactatttatttat 127  Q
    |||||||||||| ||| ||||||||| |||||||||| |||||||||||||| |||||  |||||  ||||  |||  ||||||||||||||||||||||    
T  13163377 attgctctgatatcatgatgtaacgctccggattttgatccaagacattacgtctaaattatttttttttttcctgaaaaaaacactactatttatttat 13163476  T
Q  128 ttcatctatattatattc-tagcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagtt 226  Q
    |||||| ||| || |||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||    
T  13163477 ttcatcaataataaattcttagcaaaacctatacaaaattcttgacataatttaattaaaactcttaaactaatatccttcaaaaatttctattaaagtt 13163576  T
Q  227 acaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgta 326  Q
    |||||||||||||||||||||||| ||||| ||||  |||||| | ||||||||||||| |||||| ||||| |||||||||| ||||||| ||||||||    
T  13163577 acaattcaatcaaaaacccaattttgtccctcgtacgcacttcaaacaaaaacttcaaagcatagaccatctattctttggtatctaaaatattagtgta 13163676  T
Q  327 agggtcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||||||||||||| |||||||||||||||||||||    
T  13163677 agggtcaatttccttaaccaaattggttcatactcaaa 13163714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 12910867 - 12911172
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatt--tcatctatattatattct- 146  Q
    |||||||||||||||||| ||||||||||||||||||||  ||||||| ||||  ||||| ||||||||||| ||| ||  ||||| ||| || |||||     
T  12910867 tgtaacgccccggattttagtccaagacattacgcctaattcattttcttttttcgaaaatcactactattttttttttaatcatcaataataaattctt 12910966  T
Q  147 agcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaaccc 245  Q
    ||||||| ||||||||||||||||||||||| |||| |||| || |||| ||| ||||||| |||| ||            ||||||| |||||||||||    
T  12910967 agcaaaatctatacaaaattcttaacataatttaataaaaattcctaaaataaatatcctttaaaattt------------acaattcgatcaaaaaccc 12911054  T
Q  246 aatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcc 345  Q
    ||||| ||||||||||  |||||| ||||||||||||||| |||||| ||| ||| |||||||||||||||| ||||||||||||||||||| |||||||    
T  12911055 aattt-gtcccccgtacgcacttcaagcaaaaacttcaaagcatagaccatatctgctttggtacctaaaatattagtgtaagggtcaattttcttatcc 12911153  T
Q  346 aaattggttcatactcaaa 364  Q
    |||||||||||||||||||    
T  12911154 aaattggttcatactcaaa 12911172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 52 - 364
Target Start/End: Original strand, 12195886 - 12196195
Alignment:
Q  52 taacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaa--------aaacactactatttatttatttcatctatattatat 143  Q
    ||||||||| ||||||| ||||||||||||||||||||  |||||| |||||||||        |||||||||||||||||||||||||  ||| || ||    
T  12195886 taacgccccagattttgatccaagacattacgcctaaattattttctttttctgaagaaaaaaaaaacactactatttatttatttcataaataataaat 12195985  T
Q  144 tct-agcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaa 241  Q
    ||| ||||||  ||||||||| ||||||||||||| |||| |||| ||||||| ||| ||||||| || | ||            ||||||| |||||||    
T  12195986 tcttagcaaattctatacaaagttcttaacataatttaatgaaaattcttaaaataaatatcctttaacattt------------acaattcgatcaaaa 12196073  T
Q  242 acccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttcctt 341  Q
    ||||||||| ||||||||||  |||||| |||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12196074 acccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagtatagaccatctcttctttggtacctaaaatgttagtgtaagagtcaatttcctt 12196172  T
Q  342 atccaaattggttcatactcaaa 364  Q
    |||||||||||||||||||||||    
T  12196173 atccaaattggttcatactcaaa 12196195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 58 - 358
Target Start/End: Complemental strand, 22078687 - 22078399
Alignment:
Q  58 cccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatt-tcatctatattatattct-agcaaaacc 155  Q
    ||||||||| | ||||||||||| ||||||| ||||| || ||||| |||||  || |||||||  || || ||||  ||| || ||||| ||||||| |    
T  22078687 cccggatttcgatccaagacattgcgcctaatccattctcattttc-gaaaatgaccactatttcctttttatcattaataataaattcttagcaaaatc 22078589  T
Q  156 tatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcc 255  Q
    ||||||||| |||||||||||| |||| |||| |  |||| |||||||||| |            ||| ||||||||| || ||||||||||| | ||||    
T  22078588 tatacaaaaatcttaacataatttaatgaaaattactaaaataatatccttta------------aaatttacaattcgattaaaaacccaatat-gtcc 22078502  T
Q  256 cccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttc 355  Q
    ||||||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22078501 cccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtgtaagggtcaatttccttatccaaattggttc 22078402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 51 - 364
Target Start/End: Complemental strand, 40106880 - 40106577
Alignment:
Q  51 gtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatt-tcatctatattatattct-ag 148  Q
    |||||||| ||||||||| ||||||||||||| |||||  |||| || ||||  |||||  ||||||||||  || || ||||| ||| || ||||| ||    
T  40106880 gtaacgcctcggattttgatccaagacattactcctaattcattctcatttta-gaaaattactactattttctttttatcatcaataataaattcttag 40106782  T
Q  149 caaaacctatacaaaattcttaacataatgtaattaaaact--cttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaaccca 246  Q
    ||||| ||||||||||||||||||||||| ||| ||||| |  || |||| ||||||||| |||| ||            ||||||| |||||||| |||    
T  40106781 caaaatctatacaaaattcttaacataatttaactaaaaattcctaaaataaatatcctttaaaattt------------acaattcgatcaaaaatcca 40106694  T
Q  247 atttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcca 346  Q
    |||| ||||||||||  |||||| ||||||||||||||| ||||||  |||||||||| |||||||||||| ||| ||||||||||||||||| ||||||    
T  40106693 attt-gtcccccgtacgcacttcaagcaaaaacttcaaagcatagacaatctcttcttaggtacctaaaattttaatgtaagggtcaatttccatatcca 40106595  T
Q  347 aattggttcatactcaaa 364  Q
    ||||||||||||||||||    
T  40106594 aattggttcatactcaaa 40106577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 21490614 - 21490929
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttattt------catctatattatat 143  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||| || ||||| |||||  ||||| |||| ||| |||      |||  ||| || ||    
T  21490614 tgtaacgccccagattttgatccaagacattacgcctaaatcattctcattttc-gaaaattactaccatttttttttttttttatcattaataata-at 21490711  T
Q  144 tct-agcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaa 241  Q
    ||| ||||||| ||||||||||||||||||||||| ||||||||  ||| ||| ||| |||||||||||| | | ||||||| ||| |||||||| ||||    
T  21490712 tcttagcaaaatctatacaaaattcttaacataatttaattaaacttctcaaactaaatatccttcaaaattat-tactaaaattagaattcaattaaaa 21490810  T
Q  242 acccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttcctt 341  Q
     ||||||||| ||||| | |  | |||| ||||||| |  |||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21490811 -cccaatttcttcccc-gcacgcgcttcaagcaaaa-caccaaagcataca-catgtcttctttggtacctaaaatgttagtgtaagggtcaatttcctt 21490906  T
Q  342 atccaaattggttcatactcaaa 364  Q
    |||||||||||||||||||||||    
T  21490907 atccaaattggttcatactcaaa 21490929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 225 - 364
Target Start/End: Original strand, 48653131 - 48653269
Alignment:
Q  225 ttacaattcaatcaaaaacccaatttcgtccccc-gtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 323  Q
    ||||||||| || ||||||||||||| ||||||| |||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||| |    
T  48653131 ttacaattcgat-aaaaacccaattt-gtcccccggtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattaat 48653228  T
Q  324 gtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48653229 gtaagggtcaatttccttatccaaattggttcatactcaaa 48653269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 225 - 364
Target Start/End: Original strand, 49169641 - 49169780
Alignment:
Q  225 ttacaattcaa-tcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 323  Q
    ||||||||||| | |||||| |||||| ||||| ||||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |    
T  49169641 ttacaattcaaataaaaaactcaattt-gtcccacgtacgcacttcaagcaaaaacttcaaatcatagaacatctcttctttggtacctaaaatgttaat 49169739  T
Q  324 gtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||| |||||||||| ||||||||||||||||||||||||||    
T  49169740 gtaggggtcaattttcttatccaaattggttcatactcaaa 49169780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 18366460 - 18366767
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattct-ag 148  Q
    |||||||||||| |||||| |||||||||||||||||||| |||| || ||||| |||||  ||||||||||  || | ||||  ||| || ||||| ||    
T  18366460 tgtaacgccccgaattttgatccaagacattacgcctaaatcattctcattttc-gaaaattactactattttcttttatcattaataataaattcttag 18366558  T
Q  149 caaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaa 247  Q
    ||||| ||||||||||||||||||||||| ||||||||  ||| ||| ||| |||||||||||  | | | ||||| |||||||||||| |||| |  ||    
T  18366559 caaaatctatacaaaattcttaacataatttaattaaacttctcaaactaaatatccttcaaagttattt-ctaaaattacaattcaattaaaatc--aa 18366655  T
Q  248 tttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaa 347  Q
    |||| ||||  | |  | |||| ||||||| |   |||   || | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18366656 tttcttccct-gcacgcgcttcaagcaaaacc---aaagtgtaca-catgtcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaa 18366750  T
Q  348 attggttcatactcaaa 364  Q
    |||||||||||| ||||    
T  18366751 attggttcatacccaaa 18366767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 257
Target Start/End: Complemental strand, 3692357 - 3692152
Alignment:
Q  53 aacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactat-ttatttatttcatctatattatattc-tagca 150  Q
    ||||| |||||||||| |||||||||||||||||||  ||||||| ||||  ||||||||||||||| || ||| | ||||| ||  || |||| |||||    
T  3692357 aacgctccggattttgatccaagacattacgcctaactcattttcttttttcgaaaaacactactatgttttttttatcatcaatcataaattcttagca 3692258  T
Q  151 aaacctatacaaaattcttaacataatgtaattaaaactc-ttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatt 249  Q
    |||| ||||||||||||||| |||||| ||||||||| || |||| | |||||||||| |||||| || ||| | ||||||||||||| |||||||||||    
T  3692257 aaacatatacaaaattcttagcataatttaattaaaattctttaactaaatatccttc-aaaattacttctataattacaattcaatc-aaaacccaatt 3692160  T
Q  250 tcgtcccc 257  Q
    ||||||||    
T  3692159 tcgtcccc 3692152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 364
Target Start/End: Complemental strand, 9994220 - 9994087
Alignment:
Q  229 aattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaag 328  Q
    |||| ||| ||||||||||||||||||||     || |||| |||||||||  |||| |||| | ||| ||||||||| |||||||||||||||||| ||    
T  9994220 aatttaattaaaaacccaatttcgtccccgc---acgcttcaagcaaaaacaccaaagcatacaccatgtcttctttgatacctaaaatgttagtgttag 9994124  T
Q  329 ggtc-aatttccttatccaaattggttcatactcaaa 364  Q
    || | ||||||||||||||||||||||||||||||||    
T  9994123 gggccaatttccttatccaaattggttcatactcaaa 9994087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 24053069 - 24053164
Alignment:
Q  157 atacaaaattcttaacataatgtaattaaaactcttaaatt-aatatccttcaaaaatttctactaaagttacaattcaatc-aaaaacccaattt 250  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |||  | ||||| ||||| |||| |||||||||||||    
T  24053069 atacaaaattcttaacataatttaattaaaattcttaaattaaatatccttcaaaaatctcttatgaagttgcaattaaatcaaaaaacccaattt 24053164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 49169485 - 49169561
Alignment:
Q  45 cataatgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactattt 121  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| |||| || ||||  ||||| ||| |||||||    
T  49169485 catattgtaacgcctcggattttggtccaagacattacgcctaaatcattctcatttttagaaaatcacaactattt 49169561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 9554543 - 9554584
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||| |||||| ||| |||||||||||||||    
T  9554543 tgtaagggtcaattttcttatctaaactggttcatactcaaa 9554584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 1322294 - 1322326
Alignment:
Q  298 tcttctttggtacctaaaatgttagtgtaaggg 330  Q
    ||||||||||||||||||||||| |||||||||    
T  1322294 tcttctttggtacctaaaatgttggtgtaaggg 1322326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 50 - 364
Target Start/End: Complemental strand, 34637266 - 34636952
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34637266 tgtaacgccccagattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 34637167  T
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34637166 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaatccaatt 34637067  T
Q  250 tcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaat 349  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34637066 tcgtcccccgtatacacttccagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaat 34636967  T
Q  350 tggttcatactcaaa 364  Q
    |||||||||| ||||    
T  34636966 tggttcatacccaaa 34636952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 32449393 - 32449707
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||     
T  32449393 tgtaacgccccggattttgatccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatttcatcaataatatattctaga 32449492  T
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatt 249  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  32449493 aaaacttatacaaaattcttaacatgatgtaattaaaactcttaaacttaaatccttcaaaaatttctacctaagttacaattcaatcaaaaacccaatt 32449592  T
Q  250 tcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaat 349  Q
    ||||||||||||  |||||| ||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32449593 tcgtcccccgtacgcacttcaagcaagaacttcaatgcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaat 32449692  T
Q  350 tggttcatactcaaa 364  Q
    |||||||||||||||    
T  32449693 tggttcatactcaaa 32449707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 23259757 - 23260092
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    ||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  23259757 tgtaacgccccggattttgatctaagacattacgcctaaatcatttttcttttctgaaaaacactactatttatttatttcatcaataatatattctagc 23259856  T
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttc-aaaaatttctactaaagttacaattcaatcaaaaacccaat 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23259857 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaactaatatccttcaaaaaatttctactaaagttacaattcaatcaaaaacccaat 23259956  T
Q  249 ttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatc--------------------tcttctttggtacctaaaatgttagtgtaag 328  Q
    ||| |||||||||  |||||| ||||||||||||||| |||||||||||                    |||||||||||||||||||||||||||||||    
T  23259957 ttcatcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaattcttctttggtacctaaaatgttagtgtaag 23260056  T
Q  329 ggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||||||||||||||||||||||||    
T  23260057 ggtcaatttccttatccaaattggttcatactcaaa 23260092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 26181816 - 26182134
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaa----cactactatttatttatttcatctatattatattc 145  Q
    |||||| |||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||    ||||||||||||||||||| ||| ||| || ||||    
T  26181816 tgtaacaccccagattttgttccaagacattacgcctaaatcattttctttttctgaaaaaaaaacactactatttatttatttgatcaataataaattc 26181915  T
Q  146 t-agcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacc 244  Q
    | ||||||||||||||||||| ||| ||||||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26181916 ttagcaaaacctatacaaaatgcttgacataatttaattaaa-ctcttaaactaatatccttcaaaagtttctactaaagttacaattcaatcaaaaacc 26182014  T
Q  245 caatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatc 344  Q
    |||||| || |||||||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26182015 caattttgttccccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatc 26182114  T
Q  345 caaattggttcatactcaaa 364  Q
     |||||||||||||||||||    
T  26182115 aaaattggttcatactcaaa 26182134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 146 - 364
Target Start/End: Original strand, 10750852 - 10751070
Alignment:
Q  146 tagcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaaccc 245  Q
    ||||||||  |||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  10750852 tagcaaaatttatacaaaattctttacataatttaattaaaactcttaaactaatatcattcaaaaatttctactgaagttacaattcaatcaaaaaccc 10750951  T
Q  246 aatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcc 345  Q
    ||||||||||||||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10750952 aatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcc 10751051  T
Q  346 aaattggttcatactcaaa 364  Q
    |||||||||||||||||||    
T  10751052 aaattggttcatactcaaa 10751070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 19814705 - 19814818
Alignment:
Q  14 aatattagtccgaggattattgctctgataccataatgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  19814705 aatattagtccgaggattattgctctgataccataatgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaatac 19814804  T
Q  114 tactatttatttat 127  Q
    ||||||||||||||    
T  19814805 tactatttatttat 19814818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 238 - 364
Target Start/End: Original strand, 13772725 - 13772850
Alignment:
Q  238 aaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaattt 337  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  13772725 aaaaacccaattt-gtcccccgtacgcacttctagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtgtaagagtcaattt 13772823  T
Q  338 ccttatccaaattggttcatactcaaa 364  Q
    |||||||||||||||||||||||||||    
T  13772824 ccttatccaaattggttcatactcaaa 13772850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 49 - 364
Target Start/End: Complemental strand, 24164863 - 24164556
Alignment:
Q  49 atgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattc-ta 147  Q
    |||||||||||||||||||| |||||||||||| ||||||  ||||||| ||||   |||||  | ||||||| ||| | ||||| ||| || |||| ||    
T  24164863 atgtaacgccccggattttgatccaagacattatgcctaattcattttcatttttctaaaaatgccactatttttttttatcatcaataataaattctta 24164764  T
Q  148 gcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaa-ttaatatccttcaaaaatttctactaaagttacaattcaat--caaaaacc 244  Q
    |||||||  ||||||||||||||||||||| |||| |||| ||||||| | |||||||||| ||||||  | ||||| ||||||||||||   |||||||    
T  24164763 gcaaaac--atacaaaattcttaacataatttaataaaaattcttaaactaaatatccttc-aaaattatttctaaaattacaattcaattaaaaaaacc 24164667  T
Q  245 caatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaa-gggtcaatttccttat 343  Q
    |||||| || ||||| |  | ||||     ||| |    || |||| |  || |||| |||||||||||||||||| |||||| ||||||||||||||||    
T  24164666 caattttgt-ccccgcacgcgcttc-----aaagc----aagcatacactatgtcttatttggtacctaaaatgttggtgtaaggggtcaatttccttat 24164577  T
Q  344 ccaaattggttcatactcaaa 364  Q
    |||||||||||||||||||||    
T  24164576 ccaaattggttcatactcaaa 24164556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 20559625 - 20559559
Alignment:
Q  298 tcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  20559625 tcttctttgatacctaaaatgttactgtaagggtcaatttctttatccaaattggttcatactcaaa 20559559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 360
Target Start/End: Original strand, 11166052 - 11166089
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatact 360  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  11166052 tgtaagggtcaatttccgtatccaaattggttcatact 11166089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 31275943 - 31275975
Alignment:
Q  333 aatttccttatccaaattggttcatactcaaaa 365  Q
    |||||||||||||||||||||||||||| ||||    
T  31275943 aatttccttatccaaattggttcatacttaaaa 31275975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 50 - 364
Target Start/End: Complemental strand, 537899 - 537585
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537899 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 537800  T
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatt 249  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537799 aaaacctatacaaaattcttaacacaatgtaattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatt 537700  T
Q  250 tcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaat 349  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537699 tcgtcccccgtatgcacttccagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaat 537600  T
Q  350 tggttcatactcaaa 364  Q
    |||||||||| ||||    
T  537599 tggttcatacccaaa 537585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 146 - 364
Target Start/End: Complemental strand, 6309681 - 6309461
Alignment:
Q  146 tagcaaaacctatacaaaattct---taacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaa 242  Q
    |||||||| ||||||||||| ||   | ||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6309681 tagcaaaatctatacaaaatgctgcttgacataatttaattaaaactc--aaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaa 6309584  T
Q  243 cccaatttcgtccccc-gtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttcctt 341  Q
    |||||||| ||||||| |||| |||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6309583 cccaattttgtccccccgtatgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttcctt 6309484  T
Q  342 atccaaattggttcatactcaaa 364  Q
    |||||||||||||||||||||||    
T  6309483 atccaaattggttcatactcaaa 6309461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 14 - 364
Target Start/End: Complemental strand, 42862479 - 42862139
Alignment:
Q  14 aatattagtccgaggattattgctctgataccataatgtaacgccccggattttgg-tccaagacattacgcctaaaccattttccttttctgaaaaaca 112  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||   |||||||||||| ||||||  |||| || ||||| |||||  |    
T  42862479 aatattagtccgaagattattactctgataccttaatgtaacgccccagattttttatccaagacattatgcctaattcattctcattttc-gaaaatta 42862381  T
Q  113 ctactatttatttatt-tcatctatattatattct-agcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaa 209  Q
    |||||||||  || || ||||  ||| || ||||| ||||||| ||||||||||||||||||||||| |||| |||| || |||| ||| ||||||| ||    
T  42862380 ctactattttctttttatcattaataataaattcttagcaaaatctatacaaaattcttaacataatttaataaaaattcctaaaataaatatcctttaa 42862281  T
Q  210 aaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggta 309  Q
    || ||            |||||||||||||||| ||||||| ||||||||||  |||||| ||||||||||||||| |||| ||||||||||||||||||    
T  42862280 aattt------------acaattcaatcaaaaatccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagcataaatcatctcttctttggta 42862194  T
Q  310 cctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  42862193 cctaaaatattagtgtaagggtcaattttcttatccaaattagtttatactcaaa 42862139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 225 - 364
Target Start/End: Complemental strand, 40691781 - 40691641
Alignment:
Q  225 ttacaattcaa-tcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 323  Q
    ||||||||||| |||||||| ||||||  |||||||||  |||||| ||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||    
T  40691781 ttacaattcaaatcaaaaactcaatttgttcccccgtacgcacttcaagcaaaaactttaaagcatagaccatatcttctttggtacctaaaatgttagt 40691682  T
Q  324 gtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40691681 gtaagggtcaatttccttatccaaattggttcatactcaaa 40691641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 59 - 292
Target Start/End: Complemental strand, 42640498 - 42640267
Alignment:
Q  59 ccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatt-tcatctatattatattct-agcaaaacct 156  Q
    ||||||||| |||||||||||||  |||||  ||||||| ||||   |||| ||||||||||| | |||| ||||| ||| || ||||| ||||||||||    
T  42640498 ccggattttagtccaagacattatacctaattcattttcatttttcaaaaatcactactattt-tatattatcatcaataataaattcttagcaaaacct 42640400  T
Q  157 atacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtccc 256  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| || ||||| |||||||||||| ||||| |||| |||||||     
T  42640399 atacaaaattcttaacataatttaattaaaattcttaaattaatatccttc-aaaattacttctaaaattacaattcaat-aaaaatccaa-ttcgtcca 42640303  T
Q  257 ccgtatacacttccagcaaaaacttcaaaacataga 292  Q
    |||||  |||||| ||||||||||||||| ||||||    
T  42640302 ccgtacgcacttcaagcaaaaacttcaaagcataga 42640267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 225 - 365
Target Start/End: Complemental strand, 30910662 - 30910523
Alignment:
Q  225 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 324  Q
    ||||||||| |||||||||||||||| || || ||||  |||||  ||||||||||||||| |||| | |||||||||||| ||||||||||| ||||||    
T  30910662 ttacaattcgatcaaaaacccaattt-gttcctcgtacgcactttaagcaaaaacttcaaagcataaaccatctcttctttcgtacctaaaatattagtg 30910564  T
Q  325 taagggtcaatttccttatccaaattggttcatactcaaaa 365  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30910563 taagggtcaatttccttatccaaattggttcatactcaaaa 30910523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 146 - 365
Target Start/End: Complemental strand, 38001951 - 38001743
Alignment:
Q  146 tagcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaa-c 243  Q
    |||||||| ||||||||||||||||||||||| |||| |||| ||||||| ||| ||||||| |||| ||            ||||||| |||||||| |    
T  38001951 tagcaaaatctatacaaaattcttaacataatttaataaaaattcttaaaataaatatcctttaaaattt------------acaattcgatcaaaaaac 38001864  T
Q  244 ccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttat 343  Q
    ||||||| ||||| ||||  |||||| ||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| | ||||||||||||    
T  38001863 ccaattt-gtccctcgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttgatacctaaaatattagtgtaagagccaatttccttat 38001765  T
Q  344 ccaaattggttcatactcaaaa 365  Q
    |||||||||||||||| |||||    
T  38001764 ccaaattggttcatacacaaaa 38001743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 52 - 176
Target Start/End: Original strand, 4557222 - 4557350
Alignment:
Q  52 taacgccccggattttggtccaagacattacgcctaaaccattttccttt--tctgaaaaacactactatttatttatttcatctatattata--ttcta 147  Q
    ||||||| | |||||||||||||||||||||||||||| | ||||  |||  | |||||||||||||||||||||||||||||| ||| ||||  |||||    
T  4557222 taacgcctcagattttggtccaagacattacgcctaaatcttttttttttcttttgaaaaacactactatttatttatttcatcaataatatatattcta 4557321  T
Q  148 gcaaaacctatacaaaattcttaacataa 176  Q
    |||||||||||||||||||||||||||||    
T  4557322 gcaaaacctatacaaaattcttaacataa 4557350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 250
Target Start/End: Complemental strand, 27027355 - 27027155
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattct-ag 148  Q
    ||||| ||||||||||| | |||||| ||||||||||||   |||||| | ||| ||||| || | |||||| ||| | ||||| ||| || ||| | ||    
T  27027355 tgtaatgccccggattt-gatccaaggcattacgcctaatttattttcttattc-gaaaatcatttctatttttttttatcatcaataataaattattag 27027258  T
Q  149 caaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaat-atccttcaaaaatttctactaaagttacaattcaatcaaaaacccaa 247  Q
     ||||| |||||||||||||||||||||| ||| ||||| ||||||| |||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  27027257 gaaaacttatacaaaattcttaacataatttaactaaaattcttaaaataattatacttcaaaaatttcttctaaagttacaattcaatcaaaaacccaa 27027158  T
Q  248 ttt 250  Q
    |||    
T  27027157 ttt 27027155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 4557364 - 4557450
Alignment:
Q  225 ttacaattca-atcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacc 311  Q
    |||||||||| |||||||||||||||| ||||||||||  |||||| | ||||||||||||| |||||| ||||||||| ||||||||    
T  4557364 ttacaattcatatcaaaaacccaattt-gtcccccgtacgcacttcaaacaaaaacttcaaagcatagaccatctcttcattggtacc 4557450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 40691932 - 40691861
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactattt 121  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||| ||||  ||||| |||||||||||    
T  40691932 tgtaacgccccggattttgatccaagacattacgcctaaattattttcatttttagaaaatcactactattt 40691861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 25043939 - 25044000
Alignment:
Q  21 gtccgaggattattgctctgataccataatgtaacgccccggattttggtccaagacattac 82  Q
    |||||||||||||||||||||||||||| |||||| ||||| |||||  ||||| |||||||    
T  25043939 gtccgaggattattgctctgataccatattgtaacaccccgaattttaatccaatacattac 25044000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 364
Target Start/End: Complemental strand, 23211249 - 23211214
Alignment:
Q  329 ggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||||||||||||||||||||||||    
T  23211249 ggtcaatttccttatccaaattggttcatactcaaa 23211214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 211
Target Start/End: Complemental strand, 38279480 - 38279317
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatt-tcatctatattatattct-a 147  Q
    |||||||||  |||||||| ||| |||||||||||||||  ||||  | ||||| |||||  ||||||||||  || || ||||  ||| || ||||| |    
T  38279480 tgtaacgccttggattttgatcctagacattacgcctaattcattcacattttc-gaaaattactactattttctttttatcattaataataaattctta 38279382  T
Q  148 gcaaaacctatacaaaattcttaacataatgtaattaaaact-cttaaattaatatccttcaaaa 211  Q
    |||||| ||||||||||||||||||||||| |||| |||| | || |||| ||||||||| ||||    
T  38279381 gcaaaatctatacaaaattcttaacataatttaataaaaattcctaaaataaatatcctttaaaa 38279317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 25674420 - 25674369
Alignment:
Q  53 aacgccccggattttggtccaagacattacgcctaaaccattttccttttct 104  Q
    |||| ||||||||||  |||||||||||||||||||| ||||||| ||||||    
T  25674420 aacgtcccggattttaatccaagacattacgcctaaatcattttcattttct 25674369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 46 - 364
Target Start/End: Original strand, 1460 - 1779
Alignment:
Q  46 ataatgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatct-atattatatt 144  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  1460 ataatgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatttcattttatattatatt 1559  T
Q  145 ctagcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacc 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1560 ctagcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacc 1659  T
Q  245 caatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatc 344  Q
    |||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1660 caatttcgtcccccgtatgcacttccagcaaaaacttcaaagtatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatc 1759  T
Q  345 caaattggttcatactcaaa 364  Q
    ||||||||||||||| ||||    
T  1760 caaattggttcatacccaaa 1779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 8540 - 8721
Alignment:
Q  14 aatattagtccgaggattattgctctgataccataatgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8540 aatattagtccgaggattattgctctgataccataatgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacac 8639  T
Q  114 tactatttatttatttcatctatattatattctagcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8640 tactatttatttatttcatctatattatattctagcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaa 8721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 46403725 - 46404041
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46403725 tgtaacgccccagattttgatccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 46403824  T
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaa--aatttctactaaagttacaattcaatcaaaaacccaa 247  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  46403825 aaaacctatacaaaattcttaacataatgtaattaaaactcttatactaatatccttcaaaataattactactaaagttacaattcaatcaaaaacccaa 46403924  T
Q  248 tttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaa 347  Q
    ||||||||||||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46403925 tttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaa 46404024  T
Q  348 attggttcatactcaaa 364  Q
    |||||||||||||||||    
T  46404025 attggttcatactcaaa 46404041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 5003856 - 5004170
Alignment:
Q  50 tgtaacgccccggattttggtccaagacatt-acgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctag 148  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5003856 tgtaacgccccggattttggtccaagacatttacgcctaaatcattttccttttctaaaaaacactactatttatttatttcatctatattatattctag 5003955  T
Q  149 caaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaat 248  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5003956 caaaacctatacaaaatttttaacataatgtaattaaaactcttaact-aatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaat 5004054  T
Q  249 ttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaa 348  Q
    |||||||||||||  |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5004055 ttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttatttggtacctaaaatgttagtgtaagggtcaatttccttatccaaa 5004154  T
Q  349 ttggttcatactcaaa 364  Q
    ||||||||||||||||    
T  5004155 ttggttcatactcaaa 5004170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 49 - 365
Target Start/End: Complemental strand, 16976399 - 16976082
Alignment:
Q  49 atgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaa-cactactatttatttatttcatctatattatattcta 147  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| |||| |||||||||||||||||| ||| |||||||||    
T  16976399 atgtaacgccccggattttggtccaagacattactcctaaatcattttccttttctaaaaaaacactgctatttatttatttcatcaataatatattcta 16976300  T
Q  148 gcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaa 247  Q
    || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16976299 gccaaacctatacaaaattcttaacataatgtaattaaaactcttaaactaatatccttcaaaaatttctactaaagttacaattcaatcaaaaactcaa 16976200  T
Q  248 tttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaa 347  Q
    ||||||||||||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16976199 tttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaa 16976100  T
Q  348 attggttcatactcaaaa 365  Q
    ||||||||||||||||||    
T  16976099 attggttcatactcaaaa 16976082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 58 - 364
Target Start/End: Original strand, 7335826 - 7336133
Alignment:
Q  58 cccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagcaaaaccta 157  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7335826 cccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatttcatctatattatattctagcaaaaccta 7335925  T
Q  158 tacaaaattcttaacataatgtaa--ttaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcc 255  Q
    ||||||||||||||| ||||  ||  ||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  7335926 tacaaaattcttaacgtaattaaaacttaaaactcgtaaactaagatccttcaaaa-tttctactaaagttacaattcaatcacaaacccaatttcgtcc 7336024  T
Q  256 cccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttc 355  Q
    ||||||  |||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7336025 cccgtacgcacttcaagcaaaaacttcaaagcataaatcatctcttctttgttacctaaaatgttagtgtaagggtcaatttccttatccaaattggttc 7336124  T
Q  356 atactcaaa 364  Q
    |||||||||    
T  7336125 atactcaaa 7336133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 43277168 - 43277483
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttattt-catctatattatattct-a 147  Q
    ||||||||| | ||||||| ||||| ||||||| |||||  |||| || |||||  ||||  |||||||||| ||| ||| |||| ||| || ||||| |    
T  43277168 tgtaacgcctcagattttgatccaatacattactcctaattcattctcattttca-aaaattactactattttttttttttcatcaataataaattctta 43277266  T
Q  148 gcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaat-atccttcaaaaatttctactaaagttacaattcaatcaaaaaccca 246  Q
    |||||| |||||||||||||||||||| || ||| ||||| ||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||    
T  43277267 gcaaaatctatacaaaattcttaacatcatttaactaaaattcttaaaataattatccttcaaaaatttattctaaagttacaattcaatcaaaaaccca 43277366  T
Q  247 atttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcca 346  Q
    | || || |||||||  |||||| |||||||||  ||||  ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  43277367 actt-gttccccgtacgcacttcaagcaaaaacaccaaagtatagaccatctcttctttagtacctaaaatattagtgtaagggtcaatttccttatcca 43277465  T
Q  347 aattggttcatactcaaa 364  Q
    ||||||||||||||||||    
T  43277466 aattggttcatactcaaa 43277483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 50 - 364
Target Start/End: Complemental strand, 9105168 - 9104863
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaac-actactatttatttatt-tcatctatattatattct- 146  Q
    ||||||||||| ||||||||||||||||||||||||| |  ||||  | ||||  ||||||| ||||||||||  || || ||||| ||| || |||||     
T  9105168 tgtaacgccccagattttggtccaagacattacgccttattcattcacatttttcgaaaaactactactattttctttttatcatcaataataaattctt 9105069  T
Q  147 agcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaaccc 245  Q
    ||||||| |||||||||||||||| |||||| |||| |||| || |||| ||| ||||||| |||| ||            ||||||| ||  |||||||    
T  9105068 agcaaaatctatacaaaattcttagcataatttaataaaaattcctaaaataaatatcctttaaaattt------------acaattcgatttaaaaccc 9104981  T
Q  246 aatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcc 345  Q
    ||||| ||||||||||  |||||| |||| |||||||||| ||||||  ||||||||||||||||||||||| |||||| |||| |||||||||||||||    
T  9104980 aattt-gtcccccgtacgcacttcaagcagaaacttcaaagcatagacaatctcttctttggtacctaaaatattagtgcaaggatcaatttccttatcc 9104882  T
Q  346 aaattggttcatactcaaa 364  Q
    |||||||||||||||||||    
T  9104881 aaattggttcatactcaaa 9104863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 17537618 - 17537751
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctg-----aaaaacactactatttatttatttcatctata--ttata 142  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||  |||||||     |||||||||||||||||||||||||||| |||   ||||    
T  17537618 tgtaacgccccggattttgttccaagacattacgcctaaatcattttttttttctgaaaaaaaaaacactactatttatttatttcatcaataatatata 17537717  T
Q  143 ttctagcaaaacctatacaaaattcttaacataa 176  Q
    ||||||||||||||||||||||||||||||||||    
T  17537718 ttctagcaaaacctatacaaaattcttaacataa 17537751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 146 - 364
Target Start/End: Original strand, 11937115 - 11937329
Alignment:
Q  146 tagcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacc 244  Q
    |||||||| ||||||||||||||||||||||| ||||||||  ||| ||| ||| |||||||||||| | | |  |||| |||||||||||| |||| ||    
T  11937115 tagcaaaatctatacaaaattcttaacataatttaattaaacatctcaaactaaatatccttcaaaattatttcttaaa-ttacaattcaattaaaa-cc 11937212  T
Q  245 caatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatc 344  Q
    ||||||  ||||| | |  | |||| ||||||| |  |||| |||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  11937213 caattttttcccc-gcacgcgcttcaagcaaaa-caccaaagcataca-catgtcttctttggtacctaaaatattagtgtaagggtcaatttccttatc 11937309  T
Q  345 caaattggttcatactcaaa 364  Q
    |||||||||||||| |||||    
T  11937310 caaattggttcatattcaaa 11937329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 50 - 250
Target Start/End: Complemental strand, 37980034 - 37979833
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattct-ag 148  Q
    ||||| |||| | ||| |||||||||||||||||||| |  |||| || ||||   ||||||  || ||||| ||| | ||||| ||| || ||||| ||    
T  37980034 tgtaatgccctgaattctggtccaagacattacgcctcattcattatcatttttctaaaaacgatattatttttttttatcatcaataataaattcttag 37979935  T
Q  149 caaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaa 247  Q
    |||| | ||||||||||| |||||||||| ||||||||| ||||||||||| |||||||||||||| | | |||||||| ||||| ||||||||||||||    
T  37979934 caaa-cgtatacaaaatttttaacataatttaattaaaattcttaaattaaatatccttcaaaaatctattctaaagttgcaattaaatcaaaaacccaa 37979836  T
Q  248 ttt 250  Q
    |||    
T  37979835 ttt 37979833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 8731575 - 8731508
Alignment:
Q  298 tcttctttggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||    
T  8731575 tcttctttagtacctaaaatgttgatgtaaggggtcaatttccttatccaaattggttcatactcaaa 8731508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 9083462 - 9083395
Alignment:
Q  298 tcttctttggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||    
T  9083462 tcttctttagtacctaaaatgttgatgtaaggggtcaatttccttatccaaattggttcatactcaaa 9083395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 5704722 - 5704681
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5704722 tgtaagggtcaatttccttatccaaattggttcatactcaaa 5704681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 257
Target Start/End: Original strand, 3504511 - 3504718
Alignment:
Q  49 atgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattct-a 147  Q
    ||||||||| |||||||||| ||||||||||| |||||||  ||| ||  ||||   ||||||||| |||||| ||| | |||||  || || ||| | |    
T  3504511 atgtaacgctccggattttgatccaagacatttcgcctaattcatatttatttttcaaaaaacactcctattttttt-tatcatcactaataaattatta 3504609  T
Q  148 gcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaa-ttaatatccttcaaaaatttctactaaagttacaattcaatcaaaaaccca 246  Q
    ||||||||||||||  |||||||||||||  ||||||||  ||||||| | |||||||||| ||  ||||| ||||| | |||||| |||| ||||| ||    
T  3504610 gcaaaacctatacatgattcttaacataacttaattaaatttcttaaactaaatatccttc-aacctttcttctaaa-tcacaatttaatcgaaaactca 3504707  T
Q  247 atttcgtcccc 257  Q
    |||||||||||    
T  3504708 atttcgtcccc 3504718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 1461564 - 1461523
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  1461564 tgtaagagtcaatttccttatccaaattagttcatactcaaa 1461523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 364
Target Start/End: Original strand, 17542113 - 17542145
Alignment:
Q  332 caatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||||||| |||||||||||||    
T  17542113 caatttccttatccaaattagttcatactcaaa 17542145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 49 - 364
Target Start/End: Complemental strand, 339187 - 338873
Alignment:
Q  49 atgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctag 148  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  339187 atgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatttcatcaataatatattctag 339088  T
Q  149 caaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaat 248  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  339087 caaaatctatacaaaattcttaacataatgtaattaaaactcttaaactaatatccttc-aaaatttctactcaagttacaattcaatcaaaaacccaat 338989  T
Q  249 ttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaa 348  Q
    |||||||||||||  |||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  338988 ttcgtcccccgtaagcacttcaagcaaaaacttcaaagtatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaa 338889  T
Q  349 ttggttcatactcaaa 364  Q
    ||||||||||||||||    
T  338888 ttggttcatactcaaa 338873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 43406494 - 43406808
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  43406494 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatttcatcaataatatattctagc 43406593  T
Q  150 aaaacctatacaaaattctt-aacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaat 248  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  43406594 aaaatctatacaaaattcttcaacataatgtaattaaaactcttaaactaatatccttcaaaa-tttctactcaagttacaattcaatcaaaaacccaat 43406692  T
Q  249 ttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaa 348  Q
    ||||||||| |||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43406693 ttcgtcccctgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaa 43406792  T
Q  349 ttggttcatactcaaa 364  Q
    ||||||||||||||||    
T  43406793 ttggttcatactcaaa 43406808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 37666316 - 37666620
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||  ||| |||||||||||    
T  37666316 tgtaacgccccggattttgatccaagacattacgcctaaatcatttttcttttctgaaaa-cactactatttatttatttcattaataatatattctagc 37666414  T
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatt 249  Q
    ||||||||||||||| ||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37666415 aaaacctatacaaaactcttaacataatgtaattaaaact--------aatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatt 37666506  T
Q  250 tcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaat 349  Q
    ||||||||||||  |||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37666507 tcgtcccccgtacgcacttcaagcaaaa-ctacaaagcatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaat 37666605  T
Q  350 tggttcatactcaaa 364  Q
    |||||||||||||||    
T  37666606 tggttcatactcaaa 37666620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 52 - 364
Target Start/End: Original strand, 35761147 - 35761471
Alignment:
Q  52 taacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaa-------aaacactactatttatttatttcatctatattatat- 143  Q
    |||||||||| |||||| ||||||||||||||||||||  |||| | |||||||||       |||||||||||||||||||||||||| ||| |||||     
T  35761147 taacgccccgaattttgatccaagacattacgcctaaattatttcctttttctgaagaaaaaaaaacactactatttatttatttcatcaataatatata 35761246  T
Q  144 ---tct-agcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaa 239  Q
       ||| ||||||| ||||||||||| ||| |||| || ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  35761247 tattcttagcaaaaactatacaaaatgcttgacatgatttaattaaaactcttaaactaatatccttaaaaaatttatactaaagttacaattcaatcaa 35761346  T
Q  240 aaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttcc 339  Q
    ||| ||||||||||||||||||  |||||| ||||||||||||||| ||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  35761347 aaatccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagacaatatcttctttggtacctaaaatgttagtgtaagggtcaatttcc 35761446  T
Q  340 ttatccaaattggttcatactcaaa 364  Q
    |||||||||||||||||||||||||    
T  35761447 ttatccaaattggttcatactcaaa 35761471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 229 - 364
Target Start/End: Original strand, 18472249 - 18472383
Alignment:
Q  229 aattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaag 328  Q
    ||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||    
T  18472249 aattcgatcaaaaacccaattt-gtcccccgtacacacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatattagtgtaag 18472347  T
Q  329 ggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||| ||||||||||||||||||||||||||    
T  18472348 ggtcaattttcttatccaaattggttcatactcaaa 18472383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 48 - 360
Target Start/End: Complemental strand, 6836968 - 6836664
Alignment:
Q  48 aatgtaacgccccggattttgg-tccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatt-tcatctatattatattc 145  Q
    |||||||||||||| ||||| | |||||||||||||||||||| ||||||| |||||||||||| ||||||||||  || || ||||| ||| || ||||    
T  6836968 aatgtaacgccccgtatttttgatccaagacattacgcctaaatcattttctttttctgaaaaaaactactattttctttttatcatcaataataaattc 6836869  T
Q  146 t-agcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaac 243  Q
    | | ||||| ||||||||||||||| ||||||| |||| |||| || |||| ||| ||||||| |||| ||            |||||||||| ||||||    
T  6836868 ttaacaaaatctatacaaaattctttacataatttaataaaaattcctaaaataaatatcctttaaaattt------------acaattcaat-aaaaac 6836782  T
Q  244 ccaatttcgtccccc-gtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttcctta 342  Q
    |||||||  |||||| |||  |||||| |||||| ||  |||| |||| | |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  6836781 ccaatttgttccccccgtacgcacttcaagcaaacacaccaaagcatacaccattccttctttggtacctaaaatgttagtgtaagggtcaatttcctta 6836682  T
Q  343 tccaaattggttcatact 360  Q
    ||||||||||||||||||    
T  6836681 tccaaattggttcatact 6836664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 51442504 - 51442672
Alignment:
Q  49 atgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaa----cactactatttatttatttcatctatattatat- 143  Q
    |||||||||||||||||||| ||||||||||||||||||||  |||||| |||| |||||||    ||||||||||||||||||||||| ||| |||||     
T  51442504 atgtaacgccccggattttgatccaagacattacgcctaaattattttctttttttgaaaaaaaaacactactatttatttatttcatcaataatatata 51442603  T
Q  144 -tctagcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaa 211  Q
     | |||||||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||    
T  51442604 ttatagcaaaacctatacaaaattcttaacataatttaaataaaattcttaaactaatatccttcaaaa 51442672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 274 - 364
Target Start/End: Complemental strand, 8422412 - 8422322
Alignment:
Q  274 aaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422412 aaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 8422322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 19197952 - 19198029
Alignment:
Q  52 taacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttattt 129  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||||| |||||  ||||||||||||||||||||||||    
T  19197952 taacgtcccggattttggtccaagacattacacctaaatcattttctttttcgtaaaaacactactatttatttattt 19198029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 25647881 - 25647809
Alignment:
Q  179 taattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattt 250  Q
    ||||||||| ||||||||||| |||||||||||||| ||| |||||||| ||||| |||||||||||||||||    
T  25647881 taattaaaattcttaaattaaatatccttcaaaaatctcttctaaagttgcaattaaatcaaaaacccaattt 25647809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 20147830 - 20147912
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatc 133  Q
    |||||||||||| ||||||||||||||||||||| ||||| ||||||  ||||| | ||||||| | |||||||||||||||||    
T  20147830 tgtaacgccccgaattttggtccaagacattacgtctaaatcattttatttttccg-aaaacaccattatttatttatttcatc 20147912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 33006875 - 33006972
Alignment:
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaaccca 246  Q
    |||||||| || |||||||| ||||||| ||||||||| ||||||| ||| ||||||| |||||| | | |||||| ||||||| |||||||||||||    
T  33006875 aaaacctacacgaaattctttacataatttaattaaaattcttaaaataaatatcctttaaaaatcttttctaaagatacaattaaatcaaaaaccca 33006972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 44781389 - 44781525
Alignment:
Q  63 attttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattct-agcaaaacctataca 161  Q
    |||||| ||||| |||||||||||||  ||||||| ||||   |||| | || |||||| ||| | ||||| ||| || ||||| | |||||||||||||    
T  44781389 attttgatccaaaacattacgcctaattcattttcatttttctaaaagcgctgctattttttt-tatcatcaataataaattcttaacaaaacctataca 44781487  T
Q  162 aaattcttaacataatgtaattaaaactcttaaattaa 199  Q
     ||||||||||||||| ||||||||| |||||||||||    
T  44781488 caattcttaacataatttaattaaaattcttaaattaa 44781525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 16075527 - 16075468
Alignment:
Q  306 ggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||| |||||| || ||||||||||||||||| ||||||||||||||||    
T  16075527 ggtacctaaaatgttggtgtaaaggctcaatttccttatccaagttggttcatactcaaa 16075468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 364
Target Start/End: Original strand, 19198203 - 19198241
Alignment:
Q  326 aagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19198203 aagggtcaatttccttatccaaattggttcatactcaaa 19198241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 16111177 - 16111136
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  16111177 tgtaagggtcaattttcttatccaaattggttcatactcaaa 16111136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 20600489 - 20600550
Alignment:
Q  21 gtccgaggattattgctctgataccataatgtaacgccccggattttggtccaagacattac 82  Q
    ||||||||||||| |||||||||||||| ||||||||||| ||||||  | |||||||||||    
T  20600489 gtccgaggattatcgctctgataccatattgtaacgccccagattttaattcaagacattac 20600550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 24276192 - 24276151
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  24276192 tgtaagggtcaatttctttatccaaattggttcatactcaaa 24276151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 33007051 - 33007092
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  33007051 tgtaagggtcaatttccttatccaaattgattcatactcaaa 33007092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 24055667 - 24055708
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  24055667 tgtaggggtcaatttccttatccaaattggttgatactcaaa 24055708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 33009198 - 33009157
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  33009198 tgtaagggtcaattttcttatccaaattggttcatgctcaaa 33009157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 19198065 - 19198137
Alignment:
Q  183 taaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccc 257  Q
    ||||| || |||| ||||||||||| |||||| || ||||| |||||||||||| |||||||||||||| |||||    
T  19198065 taaaattcctaaactaatatccttc-aaaattacttctaaaattacaattcaat-aaaaacccaatttcatcccc 19198137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 33006746 - 33006787
Alignment:
Q  61 ggattttggtccaagacattacgcctaaaccattttcctttt 102  Q
    |||||||||||||||||||||||| |||| ||||||| ||||    
T  33006746 ggattttggtccaagacattacgcataaatcattttcatttt 33006787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 50 - 364
Target Start/End: Complemental strand, 40448559 - 40448246
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||    
T  40448559 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatttcatcaataatatgttctagc 40448460  T
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatt 249  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  40448459 aaaatctatacaaaattcttaacataatgtaattaaaactcttaaactaatatccttc-aaaatttctactcaagttacaattcaatcaaaaacccaatt 40448361  T
Q  250 tcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaat 349  Q
    ||||||||||||  |||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40448360 tcgtcccccgtaagcacttcaagcaaaaacttcaaagtatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaat 40448261  T
Q  350 tggttcatactcaaa 364  Q
    |||||||||||||||    
T  40448260 tggttcatactcaaa 40448246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 52 - 364
Target Start/End: Complemental strand, 44789589 - 44789272
Alignment:
Q  52 taacgccccggattttggtccaa-gacattacgcctaaaccattttccttttctgaaaaa-----cactactatttatttatttcatctatattatattc 145  Q
    |||| |||| ||||||| ||||| ||||||||||||||| ||||||| ||||||||||||     ||||||||||||||||||||||| ||| || ||||    
T  44789589 taacaccccagattttgatccaaagacattacgcctaaatcattttctttttctgaaaaaaaaaacactactatttatttatttcatcaataataaattc 44789490  T
Q  146 t-agcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacc 244  Q
    | ||||||||||||||||||| ||| || || | ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  44789489 ttagcaaaacctatacaaaatgcttgacttattttaattaaaactcttaaactaatatccttcaaaagtttctactaaagttacaattcaattaaaaacc 44789390  T
Q  245 caatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatc 344  Q
    |||||| |||||  |||  ||||||  |||| ||||||||| |||||| ||  |||||||||||||||||||||||||||| ||||||||||||||||||    
T  44789389 caattttgtcccatgtacgcacttcaggcaataacttcaaagcatagacca--tcttctttggtacctaaaatgttagtgtgagggtcaatttccttatc 44789292  T
Q  345 caaattggttcatactcaaa 364  Q
    ||||||||||||||||||||    
T  44789291 caaattggttcatactcaaa 44789272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 48 - 364
Target Start/End: Original strand, 34396977 - 34397296
Alignment:
Q  48 aatgtaacgccccggattttggtccaag-acattacgcctaaaccattttccttttctgaaaaaca--ctactatttatttatttcatctatattatatt 144  Q
    ||||||||||| | ||||||| |||||| ||||||||||||||  |||||  ||| |||||||| |  ||||||||||||||||||||| ||| ||  ||    
T  34396977 aatgtaacgcctcagattttgatccaaggacattacgcctaaattatttttttttcctgaaaaaaaaactactatttatttatttcatcaataataagtt 34397076  T
Q  145 ct-agcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaac 243  Q
    || || |||| ||||| ||||||||| ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||    
T  34397077 cttagtaaaatctatataaaattcttgacataatttaat-aaaactcttaaactaatatccttcaaaaatttctactaaagttacattccaatcaaaaac 34397175  T
Q  244 ccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttat 343  Q
     |||||| || |||||||   ||||| ||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34397176 tcaattttgttccccgtacgtacttcaagcaaaaacttcaaagctcagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttat 34397275  T
Q  344 ccaaattggttcatactcaaa 364  Q
     ||||||| ||||||||||||    
T  34397276 tcaaattgattcatactcaaa 34397296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 32735251 - 32735403
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    |||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  32735251 tgtaacgccccgaattttggtccaagacatttcgcctaaatcattttccttttctgaaaaacactactatttatttatttcatcaataatatattctagc 32735350  T
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatc 203  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||    
T  32735351 aaaacctatacaaaattcttaacatcatgtaatt-aaactcttaaactaatatc 32735403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 225 - 364
Target Start/End: Original strand, 40728733 - 40728871
Alignment:
Q  225 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 324  Q
    ||||||||| |||||||||||||||| ||||||||||  |||||| ||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||    
T  40728733 ttacaattcgatcaaaaacccaattt-gtcccccgtacgcacttcaagcaaaaacttcaaagcatagactatctcttctttggtacctaaaatattagtg 40728831  T
Q  325 taagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  40728832 taagggtcaatttccttattcaaattggttcatactcaaa 40728871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 69 - 364
Target Start/End: Original strand, 18291900 - 18292184
Alignment:
Q  69 gtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttattt--atttcatctatattatattct-agcaaaacctatacaaaat 165  Q
    |||||||||| |||| ||||  ||||| | ||||  |||||||| |||||||| |||  |||||||| ||| || ||||| ||||||| ||||||||| |    
T  18291900 gtccaagacactacgtctaattcatttccatttttcgaaaaacagtactatttttttttatttcatcaatagtaaattcttagcaaaatctatacaaagt 18291999  T
Q  166 tcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatac 264  Q
    |||||||||||| |||| |||| ||||||| ||| ||||||  || |             ||||||||| ||||||| ||||||||  |||||| ||| |    
T  18292000 tcttaacataatttaatgaaaattcttaaaataaatatcctataaca-------------ttacaattcgatcaaaa-cccaattta-tcccccatatgc 18292084  T
Q  265 acttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18292085 acttcaagcaaaaacttcaaagcataaatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatcctcaaa 18292184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 48 - 366
Target Start/End: Original strand, 41339389 - 41339697
Alignment:
Q  48 aatgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatt-tcatctatattatattct 146  Q
    ||||| ||||||||||||||| |||||||||||||||||||  |||| || |||||  ||||  ||||||||||  || || ||||| ||| || |||||    
T  41339389 aatgtgacgccccggattttgatccaagacattacgcctaattcattctcattttca-aaaattactactattttctttttatcatcaataatacattct 41339487  T
Q  147 -agcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacc 244  Q
     || |||| ||||||||||||||||||||||| |||| |||| || |||| ||| ||||||| |||| ||            ||||||| || |||||||    
T  41339488 tagtaaaatctatacaaaattcttaacataatttaataaaaattcctaaaataaatatcctttaaaattt------------acaattcgataaaaaacc 41339575  T
Q  245 caatttcgtcccccgtatacacttccagcaaaa-acttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttat 343  Q
     ||||| ||||||| ||  |||||| ||||||| |||||||| ||| || ||||| |||||| ||||||||||| |||||||||||||||||||||||||    
T  41339576 taattt-gtcccccatacgcacttcaagcaaaaaacttcaaagcatggaccatcttttctttcgtacctaaaatattagtgtaagggtcaatttccttat 41339674  T
Q  344 ccaaattggttcatactcaaaag 366  Q
    |||||||||||||||||||||||    
T  41339675 ccaaattggttcatactcaaaag 41339697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 225 - 364
Target Start/End: Original strand, 35670071 - 35670208
Alignment:
Q  225 ttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtg 324  Q
    ||||||||| || ||||||| ||||| |||||||| |  |||||| ||||||||||||||| |||| | |||||||||||||||||||||||| ||||||    
T  35670071 ttacaattcgat-aaaaacctaattt-gtcccccgaacgcacttcaagcaaaaacttcaaagcatataccatctcttctttggtacctaaaatattagtg 35670168  T
Q  325 taagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  35670169 taagggtcaatttccttatccaaattggttcctactcaaa 35670208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 28266374 - 28266470
Alignment:
Q  146 tagcaaaacctatacaaaattcttaacataatgtaattaaaactctt-aaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaa 241  Q
    ||||||||||||||||| |||||||||||||| ||||||||| |||| |||| |||||||||||||||||||| |||||||||||||| ||| ||||    
T  28266374 tagcaaaacctatacaagattcttaacataatttaattaaaattcttaaaataaatatccttcaaaaatttcttctaaagttacaatttaattaaaa 28266470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 12773805 - 12773874
Alignment:
Q  295 atctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  12773805 atctcttctttggtacctaaaaggttagtgtaagtgtcaattttcttatccaaattggttcatactcaaa 12773874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 28266551 - 28266592
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28266551 tgtaagggtcaatttccttatccaaattggttcatactcaaa 28266592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 19713482 - 19713542
Alignment:
Q  22 tccgaggattattgctctgataccataatgtaacgccccggattttggtccaagacattac 82  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||||  |||||||||||||    
T  19713482 tccgaggattattgctctgataccatattataacgcctcggattttaatccaagacattac 19713542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 29271415 - 29271352
Alignment:
Q  298 tcttctttggtacctaaaatgttagtgtaaggg-tcaatttccttatccaaattggttcatact 360  Q
    ||||||||| ||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||    
T  29271415 tcttctttgatacctaaaatgttggtgtatgggctcaatttccttgtccaaattggttcatact 29271352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 23827789 - 23827830
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  23827789 tgtaagggttaatttccttatccaaattggttcatactcaaa 23827830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 12773566 - 12773640
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatt 124  Q
    |||||||| |||||||||| ||||||||||||||  |||| ||||||  ||||  ||||| ||||||||||||||    
T  12773566 tgtaacgctccggattttgatccaagacattacgtttaaatcattttattttttcgaaaatcactactatttatt 12773640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 12773675 - 12773737
Alignment:
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaa-ttaatatccttcaaaa 211  Q
    |||| ||||||||||||||||||||||| ||||||||| ||| ||| | ||||||||||||||    
T  12773675 aaaaactatacaaaattcttaacataatttaattaaaattctcaaactaaatatccttcaaaa 12773737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 364
Target Start/End: Complemental strand, 11387746 - 11387707
Alignment:
Q  325 taagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  11387746 taagggttaattttcttatccaaattggttcatactcaaa 11387707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 11388074 - 11388027
Alignment:
Q  34 tgctctgataccataatgtaacgccccggattttggtccaagacatta 81  Q
    ||||||||||||||||||||| ||||| ||||||  ||||||||||||    
T  11388074 tgctctgataccataatgtaatgccccagattttcatccaagacatta 11388027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 40728576 - 40728706
Alignment:
Q  58 cccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatt-tcatctatattatattct-agcaaaacc 155  Q
    |||| |||||| ||||||||||||| |||||  |||| || ||||| |||||  ||||||||||  || |  ||||| ||| || ||||| ||||||| |    
T  40728576 cccgaattttgatccaagacattactcctaattcattctcattttc-gaaaattactactattttcttttcatcatcaataataaattcttagcaaaatc 40728674  T
Q  156 tatacaaaattcttaacataatgtaattaaaa 187  Q
    |||||||||||||||||||||| |||| ||||    
T  40728675 tatacaaaattcttaacataatttaataaaaa 40728706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 320
Target Start/End: Original strand, 27976402 - 27976430
Alignment:
Q  292 atcatctcttctttggtacctaaaatgtt 320  Q
    |||||||||||||||||||||||||||||    
T  27976402 atcatctcttctttggtacctaaaatgtt 27976430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 320
Target Start/End: Original strand, 28062930 - 28062958
Alignment:
Q  292 atcatctcttctttggtacctaaaatgtt 320  Q
    |||||||||||||||||||||||||||||    
T  28062930 atcatctcttctttggtacctaaaatgtt 28062958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 50 - 364
Target Start/End: Complemental strand, 511 - 197
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  511 tgtaacgccccggattttggtccaagacattacgtctaactcattttctttttctgaaaaacactactatttatttatttcatctatattatattctagc 412  T
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatt 249  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  411 aaaacctatacaaaattcttaagataatgtaattaaaactcttaaactaatatccttcaagagtttctactaaagttaaaattcaatcaaaaacccaatt 312  T
Q  250 tcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaat 349  Q
    ||||||||||||  |||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  311 tcgtcccccgtacgcacttcaagcaaaaacttcaaagcataaatcatctcttctttgttacctaaaatgttagtgtaagggtcaatttccttatccaaat 212  T
Q  350 tggttcatactcaaa 364  Q
    || ||||||||||||    
T  211 tgattcatactcaaa 197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 50 - 364
Target Start/End: Complemental strand, 40460029 - 40459716
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  40460029 tgtaacgccccggattttggtccaagacattacgcctaaatcattttccttttctgaaaaacactactatttatttatttcatcaataatatattctagc 40459930  T
Q  150 aaaacctatacaaaattctt-aacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaat 248  Q
    |||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  40459929 aaaatctatacaaaattcttcaacataatgtaattaaa-ctcttaaactaatatccttcaaaa-tttctactcaagttacaattcaatcaaaaacccaat 40459832  T
Q  249 ttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaa 348  Q
    ||||||||| |||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40459831 ttcgtcccctgtacgcacttcaagcaaaaacttcaaagcatagatcatctcttctttggtacctaaaatgttagtgcaagggtcaatttccttatccaaa 40459732  T
Q  349 ttggttcatactcaaa 364  Q
    ||||||||||||||||    
T  40459731 ttggttcatactcaaa 40459716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 63 - 364
Target Start/End: Original strand, 28968374 - 28968679
Alignment:
Q  63 attttggtccaagacattacgcctaaaccattttccttttctgaaaaa--cactactatttatttatttcatctatattatattct-agcaaaacctata 159  Q
    |||||| ||||||| |||||| ||||| ||||||| ||||||||||||  ||||||||||||||||||||||| ||| || ||||| |||||||||||||    
T  28968374 attttgatccaagatattacgtctaaatcattttctttttctgaaaaaaacactactatttatttatttcatcgataataaattcttagcaaaacctata 28968473  T
Q  160 caaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaa-tttcgtccccc 258  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  28968474 caaaatgcttgacataatttaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaatccaaattttgtccccc 28968573  T
Q  259 gtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttcata 358  Q
    |||| |||||| ||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28968574 gtatgcacttcaagcaaaaacttcaaagcatagaccatcttttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaattggttgata 28968673  T
Q  359 ctcaaa 364  Q
    ||||||    
T  28968674 ctcaaa 28968679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 149 - 363
Target Start/End: Complemental strand, 70278 - 70066
Alignment:
Q  149 caaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaat 248  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| || || ||||| |||||||||||| |||||| ||||    
T  70278 caaaacctatacaaaattcttaacataatgtaattaaaattcttaaactaatatcattcaaaa-ttacttctaaaattacaattcaat-aaaaactcaat 70181  T
Q  249 ttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaa 348  Q
    |||||||||||||  |||||| ||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  70180 ttcgtcccccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatgttagtgtaaggatcaatttccttatccaaa 70081  T
Q  349 ttggttcatactcaa 363  Q
    |||||||||||||||    
T  70080 ttggttcatactcaa 70066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 238 - 364
Target Start/End: Complemental strand, 55163082 - 55162957
Alignment:
Q  238 aaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaattt 337  Q
    ||||||||||||| || | ||||| ||||||| || |||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  55163082 aaaaacccaattt-gttcgccgtacacacttcaagtaaaaacttcaaagcatagaccatctcttctttggtgcctaaaatgttagtgtaagggtcaattt 55162984  T
Q  338 ccttatccaaattggttcatactcaaa 364  Q
    |||||||||||||||||||||||||||    
T  55162983 ccttatccaaattggttcatactcaaa 55162957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 235 - 363
Target Start/End: Complemental strand, 49499950 - 49499822
Alignment:
Q  235 atcaaaaacccaatttcgtcccccgtatacacttccagc-aaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtca 333  Q
    ||||||||| |||||| ||||||||||  |||||| ||| |||||||||||| |||||| |||||||||||| | |||||||||||||||||||||||||    
T  49499950 atcaaaaactcaattt-gtcccccgtacgcacttcaagcgaaaaacttcaaagcatagaccatctcttctttagcacctaaaatgttagtgtaagggtca 49499852  T
Q  334 atttccttatccaaattggttcatactcaa 363  Q
    ||||||||||||||||| ||||||||||||    
T  49499851 atttccttatccaaattagttcatactcaa 49499822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 106 - 364
Target Start/End: Original strand, 2761277 - 2761535
Alignment:
Q  106 aaaaacactactatttatttatttcatctatattatattct-agcaaaacctatacaaaattcttaacataatgtaattaaaact-cttaaattaatatc 203  Q
    |||||| |||||||||  || | ||||| ||| || ||||| ||||||| |||||||||||| ||| |||||| ||||||||| | |||||| || ||||    
T  2761277 aaaaacgctactattttattttatcatcaataataaattcttagcaaaatctatacaaaattatta-cataatttaattaaaaattcttaaactactatc 2761375  T
Q  204 cttcaaaaatttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttct 303  Q
    |||||||| || || ||||  ||| |||||||| |||||||||||||||||| | |||  | |||| |||||||||  |||| |||| | ||| ||||||    
T  2761376 cttcaaaa-ttacttctaatattaaaattcaat-aaaaacccaatttcgtcctc-gtacgcgcttcaagcaaaaacaccaaagcatacaccatgtcttct 2761472  T
Q  304 ttggtacctaaaatgttagtgt--aagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||| |||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  2761473 ttgatacctaaaatattagtgtgtaagggtcaatttccttatccaaattggttcatactcaaa 2761535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 330
Target Start/End: Original strand, 42898239 - 42898421
Alignment:
Q  146 tagcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacc 244  Q
    ||||| ||||||||||| |||||||||||||| |||| |||| ||||||| ||| ||||| || ||||||||  ||||| |||||| |||||||||||||    
T  42898239 tagcacaacctatacaagattcttaacataatttaataaaaattcttaaactaattatccatc-aaaatttcatctaaaattacaactcaatcaaaaacc 42898337  T
Q  245 caatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacct-aaaatgttagtgtaaggg 330  Q
    ||||||     ||||||  |||||| ||||||  ||||||| | |||| ||||||||||||  ||||| |||||||| |||||||||    
T  42898338 caattt--atacccgtacgcacttcaagcaaacgcttcaaagcgtaga-catctcttctttaatacctaaaaatgttggtgtaaggg 42898421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 34827864 - 34828169
Alignment:
Q  21 gtccgaggattattgctctgataccataatgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctg-aaaaacactactat 119  Q
    ||||||||| ||||||| |||||||||||||||||| | | ||||||| | |||||||||||||  ||  ||||||| |||| || ||||||||||||||    
T  34827864 gtccgaggactattgctatgataccataatgtaacgtctcagattttgattcaagacattacgctaaattcattttcattttttgaaaaaacactactat 34827963  T
Q  120 ttatttatttcatctatattatattct--agcaaaacctatac-aaaattcttaacataatgtaa-ttaaaactcttaaattaatatccttcaaaaattt 215  Q
    || ||| || |||| ||| || |||||  |  ||||| || || ||||||| ||||||||| ||| ||||  |||  |||| ||||| ||||  |||||     
T  34827964 tt-ttttttccatcgataataaattcttaacaaaaacttagacaaaaattcgtaacataatttaatttaattctc-aaaataaatatgcttc--aaatta 34828059  T
Q  216 ctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaa 315  Q
     |  |||| |||||||||||||||||| |||||||  | |||  ||| | |||| ||||||||| ||||| |||| | ||| |||| |||||||||||||    
T  34828060 tttttaaaattacaattcaatcaaaaatccaattttat-ccctatatgcgcttcaagcaaaaacatcaaagcatacaccatgtcttttttggtacctaaa 34828158  T
Q  316 atgttagtgta 326  Q
    ||||| |||||    
T  34828159 atgttggtgta 34828169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 70341 - 70297
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccatt 94  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  70341 tgtaacgccccggattttggtccaagacattacgcctaaatcatt 70297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 10276855 - 10276814
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  10276855 tgtaagggtcaatttccttatacaaattggttcatactcaaa 10276814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 41951143 - 41951218
Alignment:
Q  14 aatattagtccgaggattattgctctgataccataatgtaacgccccggatttt-ggtccaagacattacgcctaa 88  Q
    |||||| ||||||||| ||||||||| |||||||||||||||  ||||||||||   |||||||||||||| ||||    
T  41951143 aatatttgtccgaggactattgctcttataccataatgtaacatcccggattttaaatccaagacattacgtctaa 41951218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 5e-69; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 50 - 364
Target Start/End: Complemental strand, 44437181 - 44436867
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattct-ag 148  Q
    ||||||||||||||||||| |  |||||||||  ||| |  ||||||| ||||   |||||  |||| |||| ||| | ||||| ||| || ||| | ||    
T  44437181 tgtaacgccccggattttgattgaagacattatacctgattcattttcatttttctaaaaatgctaccatttttttttatcatcaataataaattattag 44437082  T
Q  149 caaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaa 247  Q
     ||||| |||||||||||||||||||||| ||||||| | ||| ||| ||| |||||||||||| ||||| |||||||||||||||||||||||||||||    
T  44437081 aaaaacttatacaaaattcttaacataatttaattaagattctcaaactaaatatccttcaaaa-tttcttctaaagttacaattcaatcaaaaacccaa 44436983  T
Q  248 tttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaa 347  Q
    ||| ||||||| ||  |||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44436982 ttt-gtcccccatacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatgttagtgtaagggtcgatttccttatccaa 44436884  T
Q  348 attggttcatactcaaa 364  Q
    |||| ||||||||||||    
T  44436883 attgattcatactcaaa 44436867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 212 - 364
Target Start/End: Original strand, 22815622 - 22815774
Alignment:
Q  212 atttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||  |||||||| ||||||||    
T  22815622 atttctactaaagttacaattcaatcaaaaacccaatttcgtcccccgtacgcacttcaagcaaaaacttcaaatcatagactatctcttcattggtacc 22815721  T
Q  312 taaaatgttagtgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  22815722 taaaatgttaatgtaagggtcaatttcattatccaaattggttcatactcaaa 22815774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 40840649 - 40840966
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattct--a 147  Q
    ||||||||||||||||||||||||| ||||||| |||||  ||||||| ||||   |||||   |||| ||| |   | ||||| ||| || |||||  |    
T  40840649 tgtaacgccccggattttggtccaaaacattacacctaattcattttcatttttcaaaaaaatgtactttttttgcttatcatcaataataaattcttaa 40840748  T
Q  148 gcaaaacctatacaaaa-ttcttaacataatgtaattaaaactcttaaatt-aatatccttcaaaaatttctactaaagttacaattcaatcaaaaaccc 245  Q
      ||||||||||||||| |||||||| |||  ||||||||| ||||||| | |||||||||||||| || ||  | || |||||||||||||||||| ||    
T  40840749 caaaaacctatacaaaaattcttaacctaacataattaaaattcttaaaatgaatatccttcaaaa-ttacttttcaaattacaattcaatcaaaaatcc 40840847  T
Q  246 aatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcc 345  Q
    |||||   ||||||||  |||||| ||||||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40840848 aatttgtccccccgtacgcacttcaagcaaaaactttaaagcatagaccatctcttctttggtacataaaatgttagtgtaagggtcaatttccttatcc 40840947  T
Q  346 aaattggttcatactcaaa 364  Q
    ||||| |||||||||||||    
T  40840948 aaattagttcatactcaaa 40840966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 225 - 365
Target Start/End: Complemental strand, 6150424 - 6150284
Alignment:
Q  225 ttacaattca-atcaaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagt 323  Q
    |||||||||| |||||||||| ||||| |||| |||||  |||||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  6150424 ttacaattcagatcaaaaacctaattt-gtcctccgtacgcacttcaagcaaaaacttcaaagcatagaccatctcttctttggtatctaaaatgttagt 6150326  T
Q  324 gtaagggtcaatttccttatccaaattggttcatactcaaaa 365  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6150325 gtaagggtcaatttccttatccaaattggttcatactcaaaa 6150284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 50 - 364
Target Start/End: Original strand, 41957597 - 41957900
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatt-tcatctatattatattct-a 147  Q
    |||||||||  |||||||| | ||||||||||| |||||  ||||||| ||||| |||||  ||||||||||  || |  ||||| ||| || ||||| |    
T  41957597 tgtaacgccttggattttgattcaagacattactcctaattcattttcattttc-gaaaattactactattttcttttcatcatcaataataaattctta 41957695  T
Q  148 gcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaaccca 246  Q
    |||||| ||||||||||||||||||||||| |||| |||| || |||| ||| ||||||          |||  ||| ||||||||| |||||||| |||    
T  41957696 gcaaaatctatacaaaattcttaacataatttaataaaaattcctaaaataaatatcct----------cta--aaatttacaattcgatcaaaaatcca 41957783  T
Q  247 atttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatcca 346  Q
    ||||  |||||| ||  |||| | ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41957784 attta-tcccccatacgcactacaagcaaaaacttcaaagcatagaccatctcttctttggtacctaaaatattagtgtaagggtcaatttccttatcca 41957882  T
Q  347 aattggttcatactcaaa 364  Q
    ||||||||||||||||||    
T  41957883 aattggttcatactcaaa 41957900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 50 - 219
Target Start/End: Original strand, 22640563 - 22640735
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctg---aaaaacactactatttatttatttcatctatattatattc- 145  Q
    |||||||||||| |||||| | ||||||||||||||||||  |||||| |||| ||   |||||||| ||||||||||||||| ||| ||| ||  |||     
T  22640563 tgtaacgccccgaattttgatacaagacattacgcctaaattattttctttttttgaaaaaaaacacgactatttatttatttaatcaataataagttct 22640662  T
Q  146 tagcaaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctac 219  Q
    ||||||| |||||||||||||||| ||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  22640663 tagcaaagcctatacaaaattcttgacataatttaa-taaaactcttaaactaatatccttcaaaaatttctac 22640735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 35841096 - 35841029
Alignment:
Q  184 aaaactcttaaattaat-atccttcaaaaatttctactaaagttacaattcaatcaaaaacccaattt 250  Q
    |||| |||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  35841096 aaaattcttaaattaattatccttcaaaattttcttctagagttacaattcaatcaaaaacccaattt 35841029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 12659338 - 12659379
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12659338 tgtaagggtcaatttccttatccaaattggttcatactcaaa 12659379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 364
Target Start/End: Complemental strand, 35840955 - 35840915
Alignment:
Q  324 gtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35840955 gtaagggtcaatttccttatccaaattggttcatactcaaa 35840915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 6161814 - 6161775
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaa 89  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  6161814 tgtaacgccccgaattttggtccaagacattacgcctaaa 6161775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 10251046 - 10251009
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatact 360  Q
    |||||| |||||||||||||||||||||||||||||||    
T  10251046 tgtaagagtcaatttccttatccaaattggttcatact 10251009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 26162631 - 26162471
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    |||||||||| |||||||| | |||||||||||||||||| |||| || ||||  |||||  |||||||||  ||  ||| ||| ||| || |||||  |    
T  26162631 tgtaacgccctggattttgattcaagacattacgcctaaatcattctcttttttcgaaaattactactatt--ttctttttatcaataataaattctcac 26162534  T
Q  150 --aaaacctatac-aaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaa 210  Q
      ||||||||||| |||||||||| |||||| ||||||||||| || ||| |||||||| ||||    
T  26162533 caaaaacctatacgaaaattcttagcataatttaattaaaact-ttgaataaatatcctccaaa 26162471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 171
Target Start/End: Complemental strand, 35841207 - 35841086
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatatt-ctag 148  Q
    |||||| ||||| |||||||||||||||||||||| |||  |||| || |||| | ||||| |||||||||| | | | ||||| ||| || |||  |||    
T  35841207 tgtaactccccgaattttggtccaagacattacgcttaatacattctcatttt-tcaaaaatactactatttttgtttatcatcaataataaattattag 35841109  T
Q  149 caaaacctatacaaaattcttaa 171  Q
     ||||| ||||||||||||||||    
T  35841108 aaaaacttatacaaaattcttaa 35841086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 320
Target Start/End: Original strand, 21231121 - 21231149
Alignment:
Q  292 atcatctcttctttggtacctaaaatgtt 320  Q
    |||||||||||||||||||||||||||||    
T  21231121 atcatctcttctttggtacctaaaatgtt 21231149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 29132249 - 29132305
Alignment:
Q  25 gaggattattgctctgataccataatgtaacgccccggattttggtccaagacatta 81  Q
    ||||||||||||||||| ||||| ||||||||| || ||||| | |||| |||||||    
T  29132249 gaggattattgctctgacaccattatgtaacgctccagatttagatccatgacatta 29132305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 151 - 364
Target Start/End: Original strand, 32575 - 32786
Alignment:
Q  151 aaacctatacaaaattcttaa-cataatgtaattaaaactcttaaattaa-tatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaat 248  Q
    ||||| ||||||||||||||| |||||| ||| ||||| ||||||| ||| |||||||||||| || |  ||||| |||||||||||| ||||| |||||    
T  32575 aaaccaatacaaaattcttaaacataatttaactaaaattcttaaactaaatatccttcaaaa-ttacatctaaaattacaattcaattaaaaatccaat 32673  T
Q  249 ttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaa 348  Q
    || ||||||  ||  |||||| |  |||||||||||| |||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  32674 tt-gtcccctatacgcacttcaacaaaaaacttcaaagcatagaccatctc--ctttggtacctaaaatgttagtgtaagggtcaatttccttatccaaa 32770  T
Q  349 ttggttcatactcaaa 364  Q
    ||||||||||||||||    
T  32771 ttggttcatactcaaa 32786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 238 - 358
Target Start/End: Complemental strand, 1077 - 958
Alignment:
Q  238 aaaaacccaatttcgtcccccgtatacacttccagcaaaaacttcaaaacatagatcatctcttctttggtacctaaaatgttagtgtaagggtcaattt 337  Q
    ||||||||||||| |||||||||| ||||||| || |||||||||||| ||| || ||||||||||||||||| |||||| |||||||||||||||||||    
T  1077 aaaaacccaattt-gtcccccgtacacacttcaagaaaaaacttcaaagcatggaccatctcttctttggtacttaaaatattagtgtaagggtcaattt 979  T
Q  338 ccttatccaaattggttcata 358  Q
    |||||||||||||||||||||    
T  978 ccttatccaaattggttcata 958  T

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Target: scaffold1838; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 1159 - 1096
Alignment:
Q  149 caaaacctatacaaaattcttaacataatgtaattaaaact-cttaaattaatatccttcaaaa 211  Q
    ||||| ||||||||||||||||||||||| ||||||||| | || |||| ||||||||| ||||    
T  1159 caaaatctatacaaaattcttaacataatttaattaaaattcctaaaataaatatcctttaaaa 1096  T

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Target: scaffold0013 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 50 - 257
Target Start/End: Original strand, 240797 - 240983
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattacgcctaaaccattttccttttctgaaaaacactactatttatttatttcatctatattatattctagc 149  Q
    ||||| |||| |||||||| ||||||| |||||| ||||| ||||||| || |||||||||||||||||||||||||||||||| |||                
T  240797 tgtaatgccctggattttgatccaagatattacgtctaaatcattttctttctctgaaaaacactactatttatttatttcatcaata------------ 240884  T
Q  150 aaaacctatacaaaattcttaacataatgtaattaaaactcttaaattaatatccttcaaaaatttctactaaagttacaattcaatcaaaaacccaatt 249  Q
           ||| ||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| || ||||| |||||||||||| ||||||||||||    
T  240885 -------ataaaaaattcttaacataatttaattaaaattcttaaattaatatccttc-aaaattacttctaaaattacaattcaat-aaaaacccaatt 240975  T

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Target: scaffold0013; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 242428 - 242487
Alignment:
Q  306 ggtacctaaaatgttagtgtaa-gggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||| |||||| |||||||||||||| | ||||||||||||||||||||    
T  242428 ggtacctaaaatgttggtgtaaagggtcaatttccttgttcaaattggttcatactcaaa 242487  T

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Target: scaffold0002 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 356046 - 356107
Alignment:
Q  21 gtccgaggattattgctctgataccataatgtaacgccccggattttggtccaagacattac 82  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  356046 gtccgaggatcattgctctgataccataatgtaacgccccggattttcatccaagacattac 356107  T

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Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 356362 - 356403
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  356362 tgtaagggtcaatttccttattcaaattggttcatactcaaa 356403  T

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Target: scaffold0120 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 2122 - 2163
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2122 tgtaagggtcaatttccttatccaaattggttcatactcaaa 2163  T

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Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 147496 - 147556
Alignment:
Q  21 gtccgaggattattgctctgataccataatgtaacgccccggattttggtccaagacatta 81  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||||||  ||||||||||||    
T  147496 gtccgaggattattgctctaatactataatgtaacgtcccggatttttatccaagacatta 147556  T

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Target: scaffold0069 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 11504 - 11463
Alignment:
Q  323 tgtaagggtcaatttccttatccaaattggttcatactcaaa 364  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  11504 tgtaaggatcaatttccttatccaaattggttcatactcaaa 11463  T

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Target: scaffold0150 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 34858 - 34918
Alignment:
Q  21 gtccgaggattattgctctgataccataatgtaacgccccggattttggtccaagacatta 81  Q
    ||||||||||||||||||| |||| || ||||||||| |||||||||  ||||||||||||    
T  34858 gtccgaggattattgctctaatactattatgtaacgctccggatttttatccaagacatta 34918  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 199851 - 199883
Alignment:
Q  50 tgtaacgccccggattttggtccaagacattac 82  Q
    ||||||||||| |||||||||||||||||||||    
T  199851 tgtaacgccccagattttggtccaagacattac 199883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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