View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2710_high_16 (Length: 343)
Name: NF2710_high_16
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 38408383 - 38408067
Alignment:
| Q |
16 |
atcaattaaaaatactttctcaattataactattggttatggattcaatcaaatgagcatattatcataattcataagtcttaatcacatccttcctatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
38408383 |
atcaattaaaaatactttctcaattataactattggttatggattcaatcaaattagcatattatcataattcataagtcttaatcataaccttcctatt |
38408284 |
T |
|
| Q |
116 |
aaatattattttcaatcatctt---ttcctaaacattcaaaggcaagaatttttcattggaagctcatgcttacatgaaggtatcaagaatagcaacatg |
212 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38408283 |
aaatattattttcaattatcttcttttcctaaacattcagaggcaagaatttttcattggaagctcatgcttacatgaaggtatcaagaatagcaacatg |
38408184 |
T |
|
| Q |
213 |
gaatgcttcaaaatctctgatatttttctcaacaaattgcttgtacagtttatccattaccaaactcaacacatgggaagttgacaatcctgtgatgcac |
312 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38408183 |
gaatgcttcaaaatctctgatatctttctcaacaaattgcttgtacagtttatccattaccaaactcaacacatgggaagttgacaatcctgtgatgcac |
38408084 |
T |
|
| Q |
313 |
aataaaaatgataaatc |
329 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38408083 |
aataaaaatgataaatc |
38408067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 160 - 329
Target Start/End: Original strand, 1091319 - 1091488
Alignment:
| Q |
160 |
aatttttcattggaagctcatgcttacatgaaggtatcaagaatagcaacatggaatgcttcaaaatctctgatatttttctcaacaaattgcttgtaca |
259 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1091319 |
aatttttcattggaagctcatgattacttgaaggtatcaagaatagaaacatagaatgcttcagaatctctgatatctttctcaacaaattgcttgtaca |
1091418 |
T |
|
| Q |
260 |
gtttatccattaccaaactcaacacatgggaagttgacaatcctgtgatgcacaataaaaatgataaatc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
1091419 |
gtttatccattaccaaactcaacacatgggaagttgacaatcctgtgatgcaaaattaaaatgataaatc |
1091488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 705541 - 705681
Alignment:
| Q |
26 |
aatactttctcaattataactattggttatggattcaatcaaatgagcatattatcataattcata--agtcttaatcacatccttcctattaaatatta |
123 |
Q |
| |
|
|||| ||||||| ||||||| | ||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||| | |||| |||| |||| ||| |
|
|
| T |
705541 |
aatattttctcagttataaccactggttatggattcaatcaaattagcatattgccataatttataagagtcttaatcataacctttctataaaatttta |
705640 |
T |
|
| Q |
124 |
ttttca---atcatcttttcctaaacattcaaaggcaagaa |
161 |
Q |
| |
|
|||| | ||| |||||||||||| ||||||||||||||| |
|
|
| T |
705641 |
ttttaaattatcttcttttcctaaagattcaaaggcaagaa |
705681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 168 - 326
Target Start/End: Complemental strand, 24544159 - 24543996
Alignment:
| Q |
168 |
attggaagctcatgcttacatgaaggtatcaagaatagcaacatggaatgcttcaaaatctctgatatttttctcaacaaattgcttgtacagtttatcc |
267 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||| |||||| ||||||||||||||| |||||||| ||| | |
|
|
| T |
24544159 |
attggaagctcatgcttagctgaagttatcaagaatagcaagatggaatgcttcaaactctttgatatctttctcaacaaattgattgtacagagtattc |
24544060 |
T |
|
| Q |
268 |
--attaccaaactcaacacatgggaagttgacaatcctg---tgatgcacaataaaaatgataa |
326 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| ||||||| ||| |||||||||| |
|
|
| T |
24544059 |
atattaccaaactcaacacatgggacgttgacaatgctgtaatgatgcataatcaaaatgataa |
24543996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University