View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710_high_20 (Length: 280)
Name: NF2710_high_20
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 147 - 270
Target Start/End: Complemental strand, 34779519 - 34779396
Alignment:
| Q |
147 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
246 |
Q |
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| T |
34779519 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
34779420 |
T |
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| Q |
247 |
aatttcaaagggctgtgttctctg |
270 |
Q |
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| T |
34779419 |
aatttcaaagggccgtgttctctg |
34779396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 4108188 - 4108064
Alignment:
| Q |
1 |
tatttcataagatactttatgaaacactgtatgaggtgttggtatagtagcaacgatgttatgtaaggtagaattttttactcatgataattgatgtagg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4108188 |
tatttcataagatactttatgaaatactgtatgaggtgttggtatagtagcaacgatgttatgtaaggtagaattttttactcatgataattcatgtagg |
4108089 |
T |
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| Q |
101 |
aacattgatgaaataaatgtacata |
125 |
Q |
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| T |
4108088 |
aacattgatgaaataaatgtacata |
4108064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 147 - 268
Target Start/End: Original strand, 34682858 - 34682979
Alignment:
| Q |
147 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
246 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||| ||||||||| |||||| ||||||||| |
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| T |
34682858 |
gaaaactttgatgcttccgttgtaacaatgaagcactttaagacggcaattgaacaagttcagcccacagaaactcagtcctatcaaaagttgtcagcaa |
34682957 |
T |
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| Q |
247 |
aatttcaaagggctgtgttctc |
268 |
Q |
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|||||||||||||||||||||| |
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| T |
34682958 |
aatttcaaagggctgtgttctc |
34682979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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