View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710_high_21 (Length: 277)
Name: NF2710_high_21
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9888328 - 9888569
Alignment:
| Q |
1 |
tcatcattatcaaccttggaaatttgttaaaagtgtaatgttgacaccgtaattttcacaggtgatcagaaaattagcatgggagcagtcttactggatg |
100 |
Q |
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| T |
9888328 |
tcatcattatcaaccttggaaattggttaaaagtgtaatgttgacacagtaattttcacaggtgatcagaaaattagcatgtgagcagtcttactggatg |
9888427 |
T |
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| Q |
101 |
gtgatggacaatttgtagcggcgatgagtgatg---tgaggacttcgatgacacctttagacagtgatacgttggggctgcttcaaggccttaattggat |
197 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9888428 |
gtgatggacaatttgtagcggcggtgagtgatgttttgaggacttcgatgacacctttagacagtgatacgttggggctgcttcaaggccttaattggat |
9888527 |
T |
|
| Q |
198 |
cttaactttgggtcatcaaaaggtcattttttaatcagactg |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
9888528 |
cttaactttgggtcatcaaaaggtcattttttaatcagactg |
9888569 |
T |
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