View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2710_high_29 (Length: 237)
Name: NF2710_high_29
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_high_29 |
 | |
|
| [»] scaffold0150 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0150 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9028 - 9248
Alignment:
| Q |
1 |
taacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9028 |
taacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaat |
9127 |
T |
|
| Q |
101 |
gagaagtttgagggtcactttgttggtggaagaagtagaagaagccatattggaatgataacaaaccaagaagctgtattattgatttatataggccgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9128 |
gagaagtttgagggtcactttgttggtggaagaagtagaagaagccatattggaatgataacaaaccaagaagctgtattattgaattatataggccgat |
9227 |
T |
|
| Q |
201 |
tcatgggaataacgtagatgg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
9228 |
tcatgggaataacgtagatgg |
9248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 18058 - 17956
Alignment:
| Q |
33 |
ttgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaag |
132 |
Q |
| |
|
||||||||||| ||||| || | ||| |||||||||||||| |||||| | |||||| | |||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
18058 |
ttgaaaagaaagtctataacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaag |
17959 |
T |
|
| Q |
133 |
aag |
135 |
Q |
| |
|
||| |
|
|
| T |
17958 |
aag |
17956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 17020242 - 17020028
Alignment:
| Q |
1 |
taacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17020242 |
taacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaat |
17020143 |
T |
|
| Q |
101 |
gagaagtttgagggtcactttgttggtggaagaagtagaagaagccatattggaatgataacaaaccaagaagctgtattattgatttatataggccgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17020142 |
aagaagtttgagggtcactttgttggtggaagaagtagaagaagccatattggaatgataacaaatcaagaagctgtattattgatttatataggccgat |
17020043 |
T |
|
| Q |
201 |
tcatgggaataacgt |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17020042 |
tcatgggaataacgt |
17020028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 17550679 - 17550465
Alignment:
| Q |
1 |
taacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17550679 |
taacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaat |
17550580 |
T |
|
| Q |
101 |
gagaagtttgagggtcactttgttggtggaagaagtagaagaagccatattggaatgataacaaaccaagaagctgtattattgatttatataggccgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17550579 |
aagaagtttgagggtcactttgttggtggaagaagtagaagaagccatattggaatgataacaaaacaagaagctgtattattgatttatataggccgat |
17550480 |
T |
|
| Q |
201 |
tcatgggaataacgt |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
17550479 |
tcatgggaataacgt |
17550465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 17017015 - 17017117
Alignment:
| Q |
33 |
ttgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaag |
132 |
Q |
| |
|
||||||||||| |||| || | ||| |||||||||||||| |||||| | ||| || | |||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
17017015 |
ttgaaaagaaagtctacgacgggtttagatgcttcagcaaagagaactctttcaatctttgtgtcaataagaagtttgagggtcagtttggtggtggaag |
17017114 |
T |
|
| Q |
133 |
aag |
135 |
Q |
| |
|
||| |
|
|
| T |
17017115 |
aag |
17017117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 17547452 - 17547554
Alignment:
| Q |
33 |
ttgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaag |
132 |
Q |
| |
|
||||||||||| |||| || | ||| |||||||||||||| |||||| | ||| || | |||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
17547452 |
ttgaaaagaaagtctacgacgggtttagatgcttcagcaaagagaactctttcaatctttgtgtcaataagaagtttgagggtcagtttggtggtggaag |
17547551 |
T |
|
| Q |
133 |
aag |
135 |
Q |
| |
|
||| |
|
|
| T |
17547552 |
aag |
17547554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 17522368 - 17522266
Alignment:
| Q |
33 |
ttgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaag |
132 |
Q |
| |
|
||||||||||| || | ||||| |||||| ||||||||||| |||||||||| |||| | ||||| || ||||| || | || ||||||| ||| |||| |
|
|
| T |
17522368 |
ttgaaaagaaagtcaaccacagcttttgaagcttcagcaaagagaactttctgattctttgtgtcgataagaagcttcatggacactttggtggaagaag |
17522269 |
T |
|
| Q |
133 |
aag |
135 |
Q |
| |
|
||| |
|
|
| T |
17522268 |
aag |
17522266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 52133826 - 52134022
Alignment:
| Q |
9 |
gtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtt |
108 |
Q |
| |
|
||||| || ||||| ||||||| || || |||||||||||||||| ||| || |||||||| ||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
52133826 |
gtaccgacaggcaagcgaagcaagttaaagagaaaatctatcacagctttggaagcttcagcgaacagaactttgtcatttttagtgtcaatgagaagtt |
52133925 |
T |
|
| Q |
109 |
tgagggtcactttgttg---gtggaagaagtagaagaagccatattggaatgataacaaaccaagaagctgtattattgatttatataggccgattc |
202 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||| ||| || ||||||||||| ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
52133926 |
tgagggtcactttgttgggagaagaagaagttgaagaagccatgttgaaaggataacaaaccgagatgctgtattgttgatttatataggccgattc |
52134022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 52145731 - 52145854
Alignment:
| Q |
27 |
agcagattgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttgg |
126 |
Q |
| |
|
|||| |||||| ||||| ||||| |||| |||||| ||||||||||| ||||||||||||||| | || || || ||||| || | | |||| |||| |
|
|
| T |
52145731 |
agcaaattgaacagaaagtctattacagattttgaagcttcagcaaagagaactttctcattctttgtatctataagaagcttcaaagacact---ttgg |
52145827 |
T |
|
| Q |
127 |
tggaagaagtagaagaagccatattgg |
153 |
Q |
| |
|
||| ||||| ||||||||||||||||| |
|
|
| T |
52145828 |
tggtagaagaagaagaagccatattgg |
52145854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 52142189 - 52142292
Alignment:
| Q |
3 |
acaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatga |
102 |
Q |
| |
|
|||||||| || | |||||||| |||| ||||||||||| |||| |||| |||||| ||||||||||| |||||||||| |||| | ||||| || | |
|
|
| T |
52142189 |
acaacagtgccgattggcaaacatagcaagttgaaaagaaagtctacgacagcttttgaagcttcagcaaagagaactttctgattctttgtgtcgataa |
52142288 |
T |
|
| Q |
103 |
gaag |
106 |
Q |
| |
|
|||| |
|
|
| T |
52142289 |
gaag |
52142292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 52150221 - 52150285
Alignment:
| Q |
38 |
aagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcattcatggtgtcaatga |
102 |
Q |
| |
|
||||| ||||| |||| |||||||| ||||||||| ||||||||||| ||| | |||||||||| |
|
|
| T |
52150221 |
aagaatatctactacaggttttgatgtttcagcaaagagaactttctccttctttgtgtcaatga |
52150285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University