View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710_high_8 (Length: 431)
Name: NF2710_high_8
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_high_8 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 32158264 - 32157851
Alignment:
| Q |
18 |
attgtcgaccatggttgatccagttggtaagatatgacacatggcttcaaaatatttacctgtgagggcattggttcgaaatagttgatccggttggtaa |
117 |
Q |
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| T |
32158264 |
attgtcgaccatggttgatccagttggtaagatatgacacatggcttcaaaatatttacatgtgagggcattggttcgaaatagttgatccagttggtaa |
32158165 |
T |
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| Q |
118 |
gatatgatacatatgtaattactctttagtccatgatgtctatccagaacatggagattctttgagattcaactcacctaaacttttaaatatataatga |
217 |
Q |
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| T |
32158164 |
gatatgatacatatgtaattactctttagtccatgatgtctatccagaacatggagactctttgagatccaactcacctaaacttttatatatatgatga |
32158065 |
T |
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| Q |
218 |
aattactgcaaggttgcatctatgccgagagaccacttgaatgcaattctatgatattattttgttcatgtcaaatatttgttagaaactagttataata |
317 |
Q |
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| T |
32158064 |
aattactgcaaggttgcatctatgccgagagaccacttgaatgtaattgtatgatattattttgttcatgtcaaatatttgttagaaactagttataata |
32157965 |
T |
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| Q |
318 |
ataacattattttaaactaatgtttgtgataatttttctacagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagag |
417 |
Q |
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| T |
32157964 |
ataacataattttaaactaatgtttgtgataatttttctacagatgacactttcgggactattgaatgcgacagatggtctctggtcgtgctgtggagaa |
32157865 |
T |
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| Q |
418 |
gaacacataattgt |
431 |
Q |
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| T |
32157864 |
gaacacataattgt |
32157851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 286 - 431
Target Start/End: Complemental strand, 32110703 - 32110557
Alignment:
| Q |
286 |
tgtcaaatatttgttagaaactagttataataataacattattttaaactaatgtttgt-gataatttttctacagatgacactttcaggactattgaat |
384 |
Q |
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|||||| ||||| | ||||| |||||||||| || |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| |
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| T |
32110703 |
tgtcaactatttttcagaaaatagttataatgatgacattattttaaactaatgtttgttgatactttttcaacagatgacactttcaggactattgaat |
32110604 |
T |
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| Q |
385 |
gcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
431 |
Q |
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| T |
32110603 |
gcagtagatggtctttggtcatgctgtggagaagaacacataattgt |
32110557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 32182677 - 32182603
Alignment:
| Q |
357 |
acagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
431 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32182677 |
acaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
32182603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 431
Target Start/End: Original strand, 32211879 - 32211978
Alignment:
| Q |
333 |
actaatgtttgt-gataatttttctacagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
431 |
Q |
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| T |
32211879 |
actaatgtttgttggtaatttttctacagatgacactttcgggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgt |
32211978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 32156826 - 32156741
Alignment:
| Q |
346 |
ataatttttctacagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
431 |
Q |
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| T |
32156826 |
ataatttgtcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgt |
32156741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 32206824 - 32206903
Alignment:
| Q |
352 |
tttctacagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
431 |
Q |
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| T |
32206824 |
tttcaacaggtgacactttcaggactgttgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgt |
32206903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 32174591 - 32174517
Alignment:
| Q |
357 |
acagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
431 |
Q |
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| T |
32174591 |
acaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgt |
32174517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 32118895 - 32118821
Alignment:
| Q |
357 |
acagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt |
431 |
Q |
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| T |
32118895 |
acaggtgacactttcaggactattgaatgctgttgatggtctttggtcatgctgcggagaagaacacataattgt |
32118821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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