View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710_high_9 (Length: 414)
Name: NF2710_high_9
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 10388141 - 10387751
Alignment:
| Q |
19 |
caagtctccttctatgtttcctggatccaaaaatgccacactcattagaagccctggccccgtgaagagccagagcttcttccatgaaaatggtggtaca |
118 |
Q |
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| T |
10388141 |
caagtctccttctatgtttcctggatccaaaaatgccacactcattagaagccctggccccgtgaagagccagagcttcttccatgaaaatggtggtaca |
10388042 |
T |
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| Q |
119 |
atcgttgacccggtggtgttgccatttgactctaagtcaaaaatatgaaccttgtccttcgccgcatacacatagtcctctttgttttcatcgtccaacg |
218 |
Q |
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| T |
10388041 |
atcgttgacccggtggtgttgccatttgactctaagtcaaaaatatgaaccttgtccttcgccgcatacacatagtcctctttgtttccatcgtccaaag |
10387942 |
T |
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| Q |
219 |
atgttgacaaagaggacgacggtgtggacaatggtatattctcgcattcttcggattgtagcagccggttttgttctccttctaattcaacgaaatcttt |
318 |
Q |
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| T |
10387941 |
atgttgacaaagaggacgacggtgttgacaatggtatattctcgcattcttcggattgtagcagccggttttgttctccttctaattcaacgaaatcttt |
10387842 |
T |
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| Q |
319 |
tttatgatgttgttgtgattgagtgtccatgtttcatgtgattggaaaatcattgactgttgtaatgttgtctgggttattgattatgttc |
409 |
Q |
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| T |
10387841 |
tttatgatgttgttgtgattgagtgtccatgtttcatgtgattggaaaatcattgactgttgtaatgttgtctgggttattgattatgttc |
10387751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 39672327 - 39672235
Alignment:
| Q |
22 |
gtctccttctatgtttcctggatccaaaaatgccacactcattagaagccctggccccgtgaagagccagagcttcttccatgaaaatggtgg |
114 |
Q |
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| T |
39672327 |
gtctccttctaagttccctggatccaaaaacgctatactcattagaaaaccaggtccagtgaatagccatagcttcttccatgaaaatggtgg |
39672235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 5805525 - 5805616
Alignment:
| Q |
23 |
tctccttctatgtttcctggatccaaaaatgccacactcattagaagccctggccccgtgaagagccagagcttcttccatgaaaatggtgg |
114 |
Q |
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|||||||| | |||||| |||||||||||||| | ||||||||||| ||||| || |||| | |||||| |||||||||||||| ||||| |
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| T |
5805525 |
tctccttccaagtttccaggatccaaaaatgctatactcattagaaaacctggtccactgaataaccagagtttcttccatgaaaacggtgg |
5805616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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