View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2710_low_14 (Length: 370)
Name: NF2710_low_14
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 52 - 355
Target Start/End: Complemental strand, 7079529 - 7079221
Alignment:
| Q |
52 |
ttcaagatctaagatcaaaatgaagaaataaaagaatttgttaggaaccctttctttgcaacatgcattctaacattcactcttttattgagtaaaatca |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
7079529 |
ttcaagatctaagatcaaaatgaagaaataaaagaatttgttaggaaccctttcattgcaacacgcattctaacattcactcttttattgagtaaaatta |
7079430 |
T |
|
| Q |
152 |
atgtagattccacgttttataaataagtcacccataaaatggtaagaatcgcatagattttaacaaataaaacagtgattgttgaaaaatgaatgtttcg |
251 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7079429 |
atgtagattccacgttttacaaataagtcacccataaaatggcaagaatcgcatagattttaacaaataaaacagtgattgttgaaaaatgaatgtttct |
7079330 |
T |
|
| Q |
252 |
tgcactccatgtaaaaaatta-tttaatgacaacccaggttgagattttaatataaatgatga----atattacttttgaaaggaatcttaacgtaatga |
346 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
7079329 |
tgcactccatgtaaaaaattattttaatgacaacccaggttgagattttaatataaatgatgaagacatagtacttttgaaaggaatcttaacgtaatga |
7079230 |
T |
|
| Q |
347 |
agaagttaa |
355 |
Q |
| |
|
||||||||| |
|
|
| T |
7079229 |
agaagttaa |
7079221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 52 - 355
Target Start/End: Original strand, 8813145 - 8813453
Alignment:
| Q |
52 |
ttcaagatctaagatcaaaatgaagaaataaaagaatttgttaggaaccctttctttgcaacatgcattctaacattcactcttttattgagtaaaatca |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
8813145 |
ttcaagatctaagatcaaaatgaagaaataaaagaatttgttaggaaccctttctttgcaacacgcattttaatattcactcttttattgagtaaaatca |
8813244 |
T |
|
| Q |
152 |
atgtagattccacgttttataaataagtcacccataaaatggtaagaatcgcatagattttaacaaataaaacagtgattgttgaaaaatgaatgtttcg |
251 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8813245 |
atgtagattctacgttttacaaataagtcacccataaaatggtaagaattgcatagattttaacaaataaaacagagattgttgaaaaatgaatgtttcg |
8813344 |
T |
|
| Q |
252 |
tgcactccatgtaaaaaatta-tttaatgacaacccaggttgagattttaatataaatgatga----atattacttttgaaaggaatcttaacgtaatga |
346 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
8813345 |
tgcactccatgtaaaaaattattttaatgacaacccaggttgagattttaatataaatgatgaagacatagtacttttgaaaggaatcttaacgtaatga |
8813444 |
T |
|
| Q |
347 |
agaagttaa |
355 |
Q |
| |
|
||||||||| |
|
|
| T |
8813445 |
agaagttaa |
8813453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 13070090 - 13070053
Alignment:
| Q |
120 |
tctaacattcactcttttattgagtaaaatcaatgtag |
157 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13070090 |
tctaacactcactcttttattgagtaaaatcaatgtag |
13070053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 21776992 - 21776956
Alignment:
| Q |
120 |
tctaacattcactcttttattgagtaaaatcaatgta |
156 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21776992 |
tctaacattcactcttttattggataaaatcaatgta |
21776956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 7599451 - 7599489
Alignment:
| Q |
119 |
ttctaacattcactcttttattgagtaaaatcaatgtag |
157 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
7599451 |
ttctaacactcacttttttattgagtaaaatcaatgtag |
7599489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 1110349 - 1110311
Alignment:
| Q |
119 |
ttctaacattcactcttttattgagtaaaatcaatgtag |
157 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
1110349 |
ttctaacattcactcttttattgggtgaaatcaatgtag |
1110311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 15508946 - 15508983
Alignment:
| Q |
119 |
ttctaacattcactcttttattgagtaaaatcaatgta |
156 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
15508946 |
ttctaacactcactcttttattgagtgaaatcaatgta |
15508983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 1110231 - 1110267
Alignment:
| Q |
120 |
tctaacattcactcttttattgagtaaaatcaatgta |
156 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
1110231 |
tctaacactcactcttttattgagtgaaatcaatgta |
1110267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 45909606 - 45909569
Alignment:
| Q |
120 |
tctaacattcactcttttattgagtaaaatcaatgtag |
157 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
45909606 |
tctaacactcactcttttattgggtaaaatcaatgtag |
45909569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University