View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710_low_2 (Length: 479)
Name: NF2710_low_2
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 10068979 - 10069415
Alignment:
| Q |
18 |
ggacttggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatggccactacaaccatagcaaaaaattgcttcatcttcaatgcttcca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
10068979 |
ggacttggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatggccactaccagcatagcaaaaaattgcttcatcttcaatgcttcca |
10069078 |
T |
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| Q |
118 |
tttctgaaaattttcttggaaattttgtttcttttcttgcgaggaaagaaatcgagaaaagtggttaggcaaagacaaggataggtagtggatgaatatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10069079 |
tttctgaaaattttcttggaaattttgtttcttttcttgcaaggaaagaaatcgagagaagtggttaggcaaagacaaggataggtagtggatgaatatt |
10069178 |
T |
|
| Q |
218 |
aagtgtatgtctatgtgactttatatagttgcaatagaggatgaaaataaaataaagcaaatttttgggattatttaatttctgatggccagcctgcctc |
317 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10069179 |
aagtgtatgtctatgcgactttatatagttgcaatagaggatgaaaataaaataaagcaaatttttgggattatttaatttttgatggccagcctgcctc |
10069278 |
T |
|
| Q |
318 |
aacttattgttttcgaggatttcaaggatgatgacaattgtcttgttgatgagagaggaaataagttttggtggtttcattcttcttgtttttgagacga |
417 |
Q |
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| T |
10069279 |
aacttattgttttcgaggatttcaaggatgatgacaattgtcttgttgatgagagaggaaataagttttggtggtttcattcttcttgtttttgagacga |
10069378 |
T |
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| Q |
418 |
ttaactaaacgcaacgcagatactcacatgcctcttt |
454 |
Q |
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| T |
10069379 |
ttaactgaacgcaacgcagaaactcacatgcctcttt |
10069415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 10106736 - 10106970
Alignment:
| Q |
17 |
aggacttggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatggccactacaaccatagcaaaaaattgcttcatcttcaatgcttcc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||| ||| |
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| T |
10106736 |
aggacttggagctggtgcatctgcagctgaaacacttgatgctgccatcatcatgaccactaccaccatagcaaaaatttgattcatcttcaatgcctcc |
10106835 |
T |
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| Q |
117 |
atttct---gaaaattttcttggaaattttgtttcttttcttgcgaggaaagaaatcgagaaaagtggttaggcaaagacaaggataggtagtggatgaa |
213 |
Q |
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| T |
10106836 |
atttctataaaaaaaaaacttggaaattttctttcttttcttttgaggaaagaaagtgagaggaatgggtaggcaaatacaaggataggtagtggatgaa |
10106935 |
T |
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| Q |
214 |
tattaagtgtatgtctatgtgactttatatagttg |
248 |
Q |
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| T |
10106936 |
tattaagtgtatgtctatgtgactttatatagttg |
10106970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 33252941 - 33252908
Alignment:
| Q |
18 |
ggacttggagctggtgcatctgcagctgaaacac |
51 |
Q |
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| T |
33252941 |
ggacttggagctggtgcatcagcagctgaaacac |
33252908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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