View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710_low_23 (Length: 274)
Name: NF2710_low_23
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 3810846 - 3810589
Alignment:
| Q |
1 |
tccaaccaagtagagggtgaattgtgtgaggtatgataaagacaggtgttacgtaagcagcaagtatgcaccacaatgctactaattttaggctgttgtg |
100 |
Q |
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| T |
3810846 |
tccaaccaagtagagggtgaattgtgtgaggtatgataaagactggtgttacgtaagcagcaagtatgcaccacaatgctactaattttaggctgctgtg |
3810747 |
T |
|
| Q |
101 |
tgccagggtgatgctcttatcggaacgcctaaaacatatttttgagaggctcggccttgccaaatgcgtcattgctattattcctatgtatattgcagat |
200 |
Q |
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| T |
3810746 |
tgccagggtgatgctcttatcggaacgcctaaaacatatttttgagaggctcggccttgccaaacgcgtcattgctattattcctatgtatattgcagat |
3810647 |
T |
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| Q |
201 |
tggataaatatcacagccatctccgaagcatacctgcaccaattataagtcaaatttt |
258 |
Q |
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| T |
3810646 |
tggataaatatcacagccatctccgaagcatacctgcaccaattataagtcaaatttt |
3810589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 41672783 - 41672925
Alignment:
| Q |
78 |
gctactaattttaggctgttgtgtgccagggtgatgctcttatcggaacgcctaaaacatatttttgagaggctcggccttgccaaatgcgtcattgcta |
177 |
Q |
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||||||| ||| ||| |||| ||| ||| |||||||||||||| || || | | |||| |||||||||||| |||||||||||| | |||| ||||| |
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| T |
41672783 |
gctactagtttgaggatgttttgtaccaatgtgatgctcttatcagagcggcggtagcataattttgagaggcttggccttgccaaacgagtcagtgcta |
41672882 |
T |
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| Q |
178 |
ttattcctatgtatattgcagattggataaatatcacagccat |
220 |
Q |
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| T |
41672883 |
ttattccaagatatattgctgattgaataagtatcacagccat |
41672925 |
T |
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