View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710_low_24 (Length: 265)
Name: NF2710_low_24
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 330893 - 331122
Alignment:
| Q |
16 |
attgactaattgtgtgtgatataagtagtataaatttgatgattagcggatatataaatatacaaatgctactaaaaataatatgtttacaaatattaat |
115 |
Q |
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| T |
330893 |
attgactaattgtgtgtgatataaatagtataaatttgatgattagcgaatatataaatatacaaatgctactaaaaataatatgtttacgaatattaat |
330992 |
T |
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| Q |
116 |
agttaattactagattaatatttacttcaaatttgaattaataatataactctttaactcttagatcaaatcagttgagctatttaacctaaaaatccgt |
215 |
Q |
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| T |
330993 |
agttaattattagattaatatttacttcaaatttgaactaataatataactctttaactcttatatcaaatcagttgagctatttaacctaaaaatccgt |
331092 |
T |
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| Q |
216 |
ctatattatttaaaaaacaaaacaatgtga |
245 |
Q |
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| T |
331093 |
ctatattatttaaaaaacaaaacaatgtga |
331122 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 29561328 - 29561291
Alignment:
| Q |
104 |
acaaatattaatagttaattactagattaatatttact |
141 |
Q |
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| T |
29561328 |
acaaatattattagttaattattagattaatatttact |
29561291 |
T |
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