View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710_low_29 (Length: 239)
Name: NF2710_low_29
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_low_29 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 4108234 - 4108446
Alignment:
| Q |
6 |
atatagtattcataaacaccttctaaatatctacaattcctttcatagatatatagattccactgaagaaaccaacaaatcctgaaagagagaacatttc |
105 |
Q |
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| T |
4108234 |
atatagtagtcataaacaccttctaaa-atctacaattcctttcattgatatatagattccactgaagaaaccaacaaatcctgaaagagagaacatttc |
4108332 |
T |
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| Q |
106 |
tactttaacttatacatcaatgttataggatcacatcacttaacataatcaataaatacattaacagtatatacctg--aacaacattgtcagaggattt |
203 |
Q |
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| T |
4108333 |
tactttagcttatacatcaatgttataggatcacatcacttaaca----caatcaatacattaacagtatatacctgttaacaacagtgtcagaggattt |
4108428 |
T |
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| Q |
204 |
gagaacatcaccatcagc |
221 |
Q |
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| T |
4108429 |
gagaacatcaccatcagc |
4108446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 8996773 - 8996697
Alignment:
| Q |
6 |
atatagtattcataaacacctt-ctaaatatctacaattcctttcatagatatatagattccactgaagaaaccaac |
81 |
Q |
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| T |
8996773 |
atataatattcacaaacacctttctaaatatctacaattcctttcatagatatgtagattccacagcagaaaccaac |
8996697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 8996214 - 8996136
Alignment:
| Q |
81 |
caaatcctgaaagagagaacatttctactttaacttatacatcaatgttataggatcacatcacttaacataatcaata |
159 |
Q |
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| T |
8996214 |
caaatcctgaaagagagaacatttctaccttagcttataagtcaatgttatagcataacgtcacttaacacaatcaata |
8996136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 20459 - 20535
Alignment:
| Q |
81 |
caaatcctgaaagagagaacatttctactttaacttatacatcaatgttataggatcacatcacttaacataatcaata |
159 |
Q |
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| T |
20459 |
caaatcctgaaagagagaacatttctaccttagcttataagtca--gttatagcataacgtcacttaacacaatcaata |
20535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 21411988 - 21412063
Alignment:
| Q |
6 |
atatagtattcataaacaccttctaaatatctacaat-tcctttcatagatatatagattccactgaagaaaccaa |
80 |
Q |
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| T |
21411988 |
atatagtattcacaaacaccttctaaatatctacaatcttaatacatagatatgtagattccacagcagaaaccaa |
21412063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 21412553 - 21412601
Alignment:
| Q |
81 |
caaatcctgaaagagagaacatttctactttaacttatacatcaatgtt |
129 |
Q |
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| T |
21412553 |
caaatcctgaaagagagaacatttctaccttagcttataagtcaatgtt |
21412601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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