View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2710_low_4 (Length: 475)
Name: NF2710_low_4
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 7 - 460
Target Start/End: Original strand, 6655074 - 6655529
Alignment:
| Q |
7 |
tatattattctctcttagccctttgtatcattttagtttatcttcttttgactatgtatacttgatcacgactatttagcaccctatttttgaagactct |
106 |
Q |
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| T |
6655074 |
tatattattctctcttagccctttgtatcattttagtttatcttcttttgactatgtatacttggtcacgactatttagcaccctatttttgaagactct |
6655173 |
T |
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| Q |
107 |
caacaattagaccattcattttcatgtcagatcatctaatatattaccatatcatgatattggatggtcaaatgttaggtggatcaaaatttctgaaatg |
206 |
Q |
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| T |
6655174 |
caacaattagaccattcattttcatgtcagatcatctaatatattaccatatcatgatattggatggtcaaatgttaggtggatcaaaattgcagaaatg |
6655273 |
T |
|
| Q |
207 |
gtgcaccaaaattgcttttaaacctatatgaacttataaccaaattgaaatcttttgaaacatttttcggccaaaatttttgaggcg--taaaactctag |
304 |
Q |
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| T |
6655274 |
gtgcaccaaaattgcttttaaacctatatgaacttataaccaaattgaaatcttttgaaacatttttcggccaaaatttttgaggcgtataaaactctag |
6655373 |
T |
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| Q |
305 |
tttaagcagctttacctcttagaccgaccctaaactcgaccgaatcaaaccaactcattattcatttgtttgattcaaattttgtggaaaaatgttgcaa |
404 |
Q |
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| T |
6655374 |
tttaagcagctttacctcttagaccgaccctaaactcgaccgaatcaaaccaactcattattcatttgtttgattcaaattttgtgcaaaaatgttgcaa |
6655473 |
T |
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| Q |
405 |
attttaattcatgcgttcctttgccatcacatgctctgagattactctacaattac |
460 |
Q |
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| T |
6655474 |
attttagttcatgcgttcctttgccatcacatgctctgagattactctacaattac |
6655529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 39237118 - 39237197
Alignment:
| Q |
99 |
aagactctcaacaattagaccattcattttcatgtcagatcatctaatatattaccatatcatgatattggatggtcaaa |
178 |
Q |
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| T |
39237118 |
aagactctcgagaattaaaccattcgttttcaagtcaggtcatctaatatattgccacatcattaaattagatggtcaaa |
39237197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 24503451 - 24503361
Alignment:
| Q |
88 |
ccctatttttgaagactctcaacaattagaccattcattttcatgtcagatcatctaatatattaccatatcatgatattggatggtcaaa |
178 |
Q |
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| T |
24503451 |
cccttttttttaagactcttaactattagaacattcgttttcatttcgagtcatctaatatattttcatatcatcaaattggatgggcaaa |
24503361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 31978147 - 31978090
Alignment:
| Q |
94 |
ttttgaagactctcaacaattagaccattcattttcatgtcagatcatctaatatatt |
151 |
Q |
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| T |
31978147 |
ttttgaagactttcaagaattagaacattcaccttcatgtcatgtcatctaatatatt |
31978090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 34314304 - 34314355
Alignment:
| Q |
86 |
caccctatttttgaagactctcaacaattagaccattcattttcatgtcagat |
138 |
Q |
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| T |
34314304 |
caccctatttttgaagagtctcaataacta-acctttcattttcatgtcagat |
34314355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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