View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2710_low_5 (Length: 460)
Name: NF2710_low_5
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2710_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 444
Target Start/End: Complemental strand, 29220767 - 29220333
Alignment:
| Q |
10 |
aagaatattgaaacgatgctaatcgtgacatctnnnnnnntctacttccaactaagtagcaaagccaattttctaaggataatatttgcggatatgtccg |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29220767 |
aagaatattggaacgatgctaatcgtgacatctaaaaaaatctacttccaactaagtagcaaagccaattttctaaggataatatttgcggatatgaccg |
29220668 |
T |
|
| Q |
110 |
gacattcgacacagttcatatttatcttgactgtttttctaaggcgtccatttcaatcgtaatgcgagtattgtttgggaaatctttctttaaccttcac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
29220667 |
gacattcgacacagttcatatttatcttaactgtttttctaaggcgtccatttcaatcgtaatgcgactattgtttgggaaatctttctttaaccttcgc |
29220568 |
T |
|
| Q |
210 |
atggttggattgtggcatattgacaaacctttataccggggccaataatttgagtcgtggaccacttcgaagacgacgtatacaccttcaagtaatgttc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29220567 |
atggttggattgtggcatattgacaaacctttatactcgggccaataatttgagtcgtggaccacttcaaagacgacgtatacaccttcaagtaatgttc |
29220468 |
T |
|
| Q |
310 |
tcgaatcaccgtcatgcaatgtttagtgaatgaatcactagaacctagccttgcttcagccatatgtgctctaagtgaaaacaagggcccaaacctatag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29220467 |
tcgaatcaccgtcatgcaatgtttagtgaatgaatcactagaacctagccttgcttcagccatatgtgctctaagtgaaaacaagggctcaaacctatag |
29220368 |
T |
|
| Q |
410 |
taggttggttggaccaaagttgtgatagggagatt |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
29220367 |
taggttggttggaccaaagttgtgatagggagatt |
29220333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University