View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2710_low_8 (Length: 431)

Name: NF2710_low_8
Description: NF2710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2710_low_8
NF2710_low_8
[»] chr2 (8 HSPs)
chr2 (18-431)||(32157851-32158264)
chr2 (286-431)||(32110557-32110703)
chr2 (357-431)||(32182603-32182677)
chr2 (333-431)||(32211879-32211978)
chr2 (346-431)||(32156741-32156826)
chr2 (352-431)||(32206824-32206903)
chr2 (357-431)||(32174517-32174591)
chr2 (357-431)||(32118821-32118895)


Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 32158264 - 32157851
Alignment:
Q  18 attgtcgaccatggttgatccagttggtaagatatgacacatggcttcaaaatatttacctgtgagggcattggttcgaaatagttgatccggttggtaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  32158264 attgtcgaccatggttgatccagttggtaagatatgacacatggcttcaaaatatttacatgtgagggcattggttcgaaatagttgatccagttggtaa 32158165  T
Q  118 gatatgatacatatgtaattactctttagtccatgatgtctatccagaacatggagattctttgagattcaactcacctaaacttttaaatatataatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||| ||||    
T  32158164 gatatgatacatatgtaattactctttagtccatgatgtctatccagaacatggagactctttgagatccaactcacctaaacttttatatatatgatga 32158065  T
Q  218 aattactgcaaggttgcatctatgccgagagaccacttgaatgcaattctatgatattattttgttcatgtcaaatatttgttagaaactagttataata 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32158064 aattactgcaaggttgcatctatgccgagagaccacttgaatgtaattgtatgatattattttgttcatgtcaaatatttgttagaaactagttataata 32157965  T
Q  318 ataacattattttaaactaatgtttgtgataatttttctacagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagag 417  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||     
T  32157964 ataacataattttaaactaatgtttgtgataatttttctacagatgacactttcgggactattgaatgcgacagatggtctctggtcgtgctgtggagaa 32157865  T
Q  418 gaacacataattgt 431  Q
    ||||||||||||||    
T  32157864 gaacacataattgt 32157851  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 286 - 431
Target Start/End: Complemental strand, 32110703 - 32110557
Alignment:
Q  286 tgtcaaatatttgttagaaactagttataataataacattattttaaactaatgtttgt-gataatttttctacagatgacactttcaggactattgaat 384  Q
    |||||| ||||| | ||||| |||||||||| || |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||    
T  32110703 tgtcaactatttttcagaaaatagttataatgatgacattattttaaactaatgtttgttgatactttttcaacagatgacactttcaggactattgaat 32110604  T
Q  385 gcgacagatggtctttggtcatgttgtggagaggaacacataattgt 431  Q
    ||   |||||||||||||||||| |||||||| ||||||||||||||    
T  32110603 gcagtagatggtctttggtcatgctgtggagaagaacacataattgt 32110557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 32182677 - 32182603
Alignment:
Q  357 acagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt 431  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32182677 acaggtgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt 32182603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 431
Target Start/End: Original strand, 32211879 - 32211978
Alignment:
Q  333 actaatgtttgt-gataatttttctacagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt 431  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||| || |||||||| ||||||||||||||    
T  32211879 actaatgtttgttggtaatttttctacagatgacactttcgggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgt 32211978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 32156826 - 32156741
Alignment:
Q  346 ataatttttctacagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt 431  Q
    ||||||| || |||| |||||||||||||||||||||||||   |||||||||||||||||| |||||||| ||||||||||||||    
T  32156826 ataatttgtcaacaggtgacactttcaggactattgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgt 32156741  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 32206824 - 32206903
Alignment:
Q  352 tttctacagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt 431  Q
    |||| |||| |||||||||||||||| ||||||||   |||||||||||||||||| |||||||| ||||||||||||||    
T  32206824 tttcaacaggtgacactttcaggactgttgaatgcagtagatggtctttggtcatgctgtggagaagaacacataattgt 32206903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 32174591 - 32174517
Alignment:
Q  357 acagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt 431  Q
    |||| |||||||||||||||||||||||||   ||||||||||||||| || |||||||| ||||||||||||||    
T  32174591 acaggtgacactttcaggactattgaatgcagtagatggtctttggtcgtgctgtggagaagaacacataattgt 32174517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 32118895 - 32118821
Alignment:
Q  357 acagatgacactttcaggactattgaatgcgacagatggtctttggtcatgttgtggagaggaacacataattgt 431  Q
    |||| |||||||||||||||||||||||||    ||||||||||||||||| || ||||| ||||||||||||||    
T  32118895 acaggtgacactttcaggactattgaatgctgttgatggtctttggtcatgctgcggagaagaacacataattgt 32118821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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