View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2711_high_1 (Length: 898)

Name: NF2711_high_1
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2711_high_1
NF2711_high_1
[»] chr8 (1 HSPs)
chr8 (19-885)||(34441759-34442614)


Alignment Details
Target: chr8 (Bit Score: 783; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 783; E-Value: 0
Query Start/End: Original strand, 19 - 885
Target Start/End: Original strand, 34441759 - 34442614
Alignment:
Q  19 caatgtccaattgtatcagttttggtcaatttgggccccaaacaaaacaatcaaatttatgaaactgtctgtatcagtatcatcacaaacttggattgga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34441759 caatgtccaattgtatcagttttggtcaatttgggccccaaacaaaacaatcaaatttatgaaactgtctgtatcagtatcatcacaaacttggattgga 34441858  T
Q  119 gcatcttatggccacgtgaaaaagtcagaagaaaactccattatcatacccctcagctcaggagtatcacagatcctctatgctcttcttaatcttacac 218  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34441859 gcatcttatggccacgtgaaaaagtcagaagaaacctccattatcatacccctcagctcaggagtatcacagatcctctatgctcttcttaatcttacac 34441958  T
Q  219 cgtccacgtgtccatccatcacacctcatgttatactattttatctacactagatctaatctagtataaccgttacaagtacaaccatagtttttaactc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||    
T  34441959 cgtccacgtgtccatccatcacacctcatgttatactattttatctacactagatcta-----gtataaccgttacaagtacaaccatagtttttaactc 34442053  T
Q  319 annnnnnnctctttggagacagtagaaatataacagtagtactatggttactattattaactagtagtagtattttcctacctagtggacttgtctctga 418  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||      | ||||||||||||||||||||||||||||||||||||    
T  34442054 atttttttctctttggagacagtagaaatataacagtagtactatggttactatta------actagtagtattttcctacctagtggacttgtctctga 34442147  T
Q  419 cacataaatcaataaaccaattgaattctaccatgattcctttgtttgctaactctatagagtgaagatatgaaatgtggattccaattccaacccacat 518  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34442148 cacataaatcaataaaccaattcaattctaccatgattcctttgtttgctaactctatagagtgaagatatgaaatgtggattccaattccaacccacat 34442247  T
Q  519 ggcacctgcattacttgcttagtaataataatattaataataaaaaagctcatcaatttccaaggtaaattgttattctatgtttcttcttttttatcta 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34442248 ggcacctgcattacttgcttagtaataataatattaataataaaaaagctcatcaatttccaaggtaaattgttattctatgtttcttcttttttatcta 34442347  T
Q  619 tctattcttgtcctaaatggcccccctccttttttgtgaaaccatgcacagtatattttgttaattattagtagtatattttaatattgaatggatctca 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34442348 tctattcttgtcctaaatggcccccctccttttttgtgaaaccatgcacagtatattttgttaattattagtagtatattttaatattgaatggatctca 34442447  T
Q  719 aattcactcatttctctgcaactctcagaatttcatggttttcaagtattaataagaaggtacatcatatcattcattctcttaaatagtaagcattgag 818  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34442448 aattcactcatttctctgcaactctcagaatttcatggttttcaagtattaataagaaggtacatcatatcattcattctcttaaacagtaagcattgag 34442547  T
Q  819 caatatatactctgaacttagtgtttaattctgtgttcctctaatatatgtctttcctcctcctttg 885  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34442548 caatatatactctgaacttagtgtttaattctgtgttcctctaatatatgtctttcttcctcctttg 34442614  T

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