View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_high_10 (Length: 473)
Name: NF2711_high_10
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 458
Target Start/End: Original strand, 4904420 - 4904868
Alignment:
| Q |
10 |
tatactgtatagcgattgtccaagttttcgagtttcatcaaagttattggttgatttcttaagatcttcaagagaaaattgatggcatagttcttttata |
109 |
Q |
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| T |
4904420 |
tatactgtatagtgattgtccaagttttcgagtttcatcaaagttattgcttgatttcttaagatcttcaagagaaaattgatggcatagttcttttata |
4904519 |
T |
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| Q |
110 |
gatgttggacattgctgcttcctggatgaacttttatggtttgagtattttacaggcatatttcccataatatttttgtttaatagccaatgatcaaggt |
209 |
Q |
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| T |
4904520 |
gatgttggacattgctgcttcctggatgaacttttatggtttgagtattttacaggcatatttcccataatatttttgtttaatagccaatgatcaaggt |
4904619 |
T |
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| Q |
210 |
tcacattcagaggtacataaataccaatcctaagatataataagtcatagaaattagcataagatataataagtcatttggtaaaaacattgcaatatgt |
309 |
Q |
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| T |
4904620 |
tcacattcagaggtacataaataccaatcctaagatataataagtcataggaattagcataagatataataagtcatttggtaaaaacattgcaatatgt |
4904719 |
T |
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| Q |
310 |
ggtgaaccnnnnnnngacaaaatagattaaaatttacctgcaagttcaatcctcatgtgctatcgtccatgatcagcaaaggaattagctcaatactttg |
409 |
Q |
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| T |
4904720 |
ggtgtaccaaaaaaagacaaaatagattaaattttacctgcaagttcaatcctcatgtgctatcgtccatgatcagcaaaggaattagctcaatactttg |
4904819 |
T |
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| Q |
410 |
ttgaaggaaggaatcttggaagcttattgtttatagaaaatggtatatg |
458 |
Q |
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| T |
4904820 |
ttgaaggaaggaatcttggaagcttattgtttatagaaaatggtatatg |
4904868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 4921609 - 4921461
Alignment:
| Q |
25 |
ttgtccaagttttcgagtttcatcaaagttattggttgatttcttaagatcttcaagagaaaattgatggcatagttcttttatagatgttggacattgc |
124 |
Q |
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| T |
4921609 |
ttgtccaatttttcgatttttatcaaagttattggtagctttcttaagatcgtccagagaaaactcatggcatagttcttttataaatgttgaacat--- |
4921513 |
T |
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| Q |
125 |
tgcttcctggatgaacttttatggtttgagtattttacaggcatatttccca |
176 |
Q |
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| T |
4921512 |
tgtttcttggacgaacttctacgctttgagtattttgcaagcatatttccca |
4921461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 4927848 - 4927703
Alignment:
| Q |
28 |
tccaagttttcgagtttcatcaaagttattggttgatttcttaagatcttcaagagaaaattgatggcatagttcttttatagatgttggacattgctgc |
127 |
Q |
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| T |
4927848 |
tccaatttttcgattttcatcaaagttattggtagctttcttaagctcgtccagagaaaactcatggcatagctcatttataaatgttgaacat---tgt |
4927752 |
T |
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| Q |
128 |
ttcctggatgaacttttatggtttgagtattttacaggcatatttccca |
176 |
Q |
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| T |
4927751 |
ttcttggacgaacttctacgctttgagtattttgcaagcatatttccca |
4927703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 5821909 - 5821797
Alignment:
| Q |
10 |
tatactgtatagcgattgtccaagttttcgagtttcatcaaagttattggttgatttcttaagatcttcaagagaaaattgatggcatagttcttttata |
109 |
Q |
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||||||| |||| |||| || || ||||||| |||| | |||||||||||||||||| |||| |||||||||||||||||||| ||||| |||| |||| |
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| T |
5821909 |
tatactgaatagtgattttctaatttttcgatcttcagcgaagttattggttgatttcctaagttcttcaagagaaaattgatgacatagctcttctata |
5821810 |
T |
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| Q |
110 |
gatgttggacatt |
122 |
Q |
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| T |
5821809 |
actgttggacatt |
5821797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 4908381 - 4908507
Alignment:
| Q |
47 |
tcaaagttattggttgatttcttaagatcttcaagagaaaattgatggcatagttcttttatagatgttggacattgctgcttcctggatgaacttttat |
146 |
Q |
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| T |
4908381 |
tcaaagttattagtagatttcttaagatcatccagagaaaattgatggcatcgctcttctataacagttggatat---tgtttcttggaaggacttttac |
4908477 |
T |
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| Q |
147 |
ggtttgagtattttacaggcatatttccca |
176 |
Q |
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| T |
4908478 |
gctttgaatattttacaagcatatttccca |
4908507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 434
Target Start/End: Complemental strand, 4927231 - 4927166
Alignment:
| Q |
370 |
tatcgtccatgatcagcaaa-ggaattagctcaatactttgttgaaggaaggaatcttggaagctt |
434 |
Q |
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| T |
4927231 |
tatcgtccatgttcagcaaaaggaattagctcaatgctgtgttcaacgaaggaatcttgaaagctt |
4927166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 427
Target Start/End: Complemental strand, 4920959 - 4920866
Alignment:
| Q |
335 |
attaaaatttacctgcaagttcaatcctcatgtgctatcgtccatgatca-gcaaaggaattagctcaata--ctttgttgaaggaaggaatcttg |
427 |
Q |
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| T |
4920959 |
attaaattttacctgcaagatcaatcctcaagcg-tatcgtcc-tgatcaggcaaaggaataaacacaatactctctgttgaaggaaggaatcttg |
4920866 |
T |
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