View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2711_high_11 (Length: 462)

Name: NF2711_high_11
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2711_high_11
NF2711_high_11
[»] chr4 (3 HSPs)
chr4 (1-444)||(5278196-5278639)
chr4 (113-444)||(5286289-5286620)
chr4 (13-444)||(5282457-5282892)
[»] chr5 (2 HSPs)
chr5 (26-444)||(20353849-20354267)
chr5 (113-444)||(20357675-20358006)
[»] chr2 (2 HSPs)
chr2 (122-444)||(6235270-6235592)
chr2 (27-89)||(6235192-6235254)
[»] scaffold0899 (1 HSPs)
scaffold0899 (135-256)||(3145-3265)
[»] chr6 (5 HSPs)
chr6 (247-396)||(702379-702528)
chr6 (275-381)||(710676-710782)
chr6 (275-381)||(717709-717815)
chr6 (275-396)||(712910-713031)
chr6 (194-263)||(14437443-14437512)
[»] chr1 (1 HSPs)
chr1 (241-444)||(35313550-35313753)
[»] scaffold1230 (1 HSPs)
scaffold1230 (138-257)||(1140-1259)


Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 5278196 - 5278639
Alignment:
1 atatagtcaagtaacaaacgtgaactttatttattacaataataataagcagagagggttgcttgcacaaggtgattcaaaacctaaagacaactatcaa 100  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
5278196 atatagtcaaataacaaatgtgaactttatttattacaataataataagcagagagggttgcttgcacaaggtgattcgaaacctaaagacacctatcaa 5278295  T
101 tttagagtaaacagtcgactgatcatgttctccgactagttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
5278296 tttagagtaaacagtcgactgatcatgttctccgactagttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacttgaaaag 5278395  T
201 ctttggtaagaacttcgtctgaaataagaggatcagatttaaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagc 300  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
5278396 ctttggtaagaacttcgtcggaaataagaggatctgatttaaacaaagcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagc 5278495  T
301 aacagcgttgccatatcccacattcagctgaaaatgaataagaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattg 400  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||    
5278496 aacagcgttgccatatcccacattcagttgaaaatgaataagaccaattgggaacacaaacacatcacccttgttgagcaccttggtaaagagacgattg 5278595  T
401 ttgtcttgatttgatgtgacaaatccaacataaagagtaccttc 444  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
5278596 ttgtcttgatttgatgtgacaaatccaacataaagagtgccttc 5278639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 113 - 444
Target Start/End: Original strand, 5286289 - 5286620
Alignment:
113 agtcgactgatcatgttctccgactagttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaa 212  Q
    |||| ||| |||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
5286289 agtcaactaatcatgttctcaaactagttgttgtcataccaagactgcttttgaagataatcaattatgctcttatccacttgaaaagctttggtaagaa 5286388  T
213 cttcgtctgaaataagaggatcagatttaaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgcc 312  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
5286389 cttcgtcggaaataagaggatctgatttaaacaaagcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagcaacggcgttgcc 5286488  T
313 atatcccacattcagctgaaaatgaataagaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtcttgattt 412  Q
    ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
5286489 atatcccacattcagttgaaaatgaataagaccaattgggaacacaaacacatcacccttgttgagcaccttggtaaagagacgattgttgtcttgattt 5286588  T
413 gatgtgacaaatccaacataaagagtaccttc 444  Q
    || ||||||||||||||||||||||| |||||    
5286589 gaagtgacaaatccaacataaagagtgccttc 5286620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 444
Target Start/End: Complemental strand, 5282892 - 5282457
Alignment:
13 aacaaacgtgaactttatttattacaataataataagcagagagggttgcttgcacaaggtgattcaaaacctaaagacaactatcaatttagagtaaac 112  Q
    ||||||| || | ||||||||||||||||||| |||| ||||| ||||| || |||||||||||| || | | |||| ||| |||| ||| |||||||||    
5282892 aacaaacatgtattttatttattacaataata-taagtagagatggttgattacacaaggtgattgaagaacgaaagtcaattatccattcagagtaaac 5282794  T
113 agtcgactgat-----catgttctccgactagttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggt 207  Q
      | ||||  |     |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||    
5282793 catggactattatattcatgttctccaactagttgttgtcgtaccaagactgcttttgaagataatcaattatgctcttatccacttgaaatgctttggt 5282694  T
208 aagaacttcgtctgaaataagaggatcagatttaaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcg 307  Q
    |||||||||||| |||||||| ||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
5282693 aagaacttcgtcggaaataagcggattcgatttaaacaaagcatttgctacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcg 5282594  T
308 ttgccatatcccacattcagctgaaaatgaataagaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtctt 407  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||    
5282593 ttgccatatcccacattcagctgaaaatgaataagaccaatcgggaacacaaacacatcacccttgttgagcactttggtgaagagacgattgttgtctt 5282494  T
408 gatttgatgtgacaaatccaacataaagagtaccttc 444  Q
    |||| || ||||||||||||||||||||||| |||||    
5282493 gattggacgtgacaaatccaacataaagagtgccttc 5282457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 26 - 444
Target Start/End: Complemental strand, 20354267 - 20353849
Alignment:
26 tttatttattacaataataataagcagagagggttgcttgcacaaggtgattcaaaacctaaagacaactatcaatttagagtaaacagtcgactgatca 125  Q
    |||||||| |||||| |||||||| ||||||||||| ||||||||||||||| || | | |||  ||| |||| ||| |||||||||  | || | ||||    
20354267 tttatttaatacaatgataataagtagagagggttgattgcacaaggtgattgaagaacgaaattcaattatccattcagagtaaaccatggaataatca 20354168  T
126 tgttctccgactagttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaacttcgtctgaaat 225  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
20354167 tgttctccaactagttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacttgaaaagctttggtaagaacttcgtcggaaat 20354068  T
226 aagaggatcagatttaaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattc 325  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
20354067 aagaggatcagatttaaacaaagcgtttgcaacagtgattactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattc 20353968  T
326 agctgaaaatgaataagaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtcttgatttgatgtgacaaatc 425  Q
    || ||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||||    
20353967 agttgaaaatgaataagaccaattgggaacacaaacacatcacccttgttgagcactttggtgaagagacgattgttgtcttgattggacgtgacaaatc 20353868  T
426 caacataaagagtaccttc 444  Q
    ||||||||||||| |||||    
20353867 caacataaagagtgccttc 20353849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 113 - 444
Target Start/End: Original strand, 20357675 - 20358006
Alignment:
113 agtcgactgatcatgttctccgactagttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaa 212  Q
    |||| ||| |||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
20357675 agtcaactaatcatgttctctaactagttgttgtcataccaagactgcttttgaagataatcaattatgctcttatccacttgaaaagctttggtaagaa 20357774  T
213 cttcgtctgaaataagaggatcagatttaaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgcc 312  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||    
20357775 cttcgtcggaaataagaggatctgatttaaacaaagcatttgcaacggtgataactcctggattttgactgctaagtccagcaatagcaacggcattgcc 20357874  T
313 atatcccacattcagctgaaaatgaataagaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtcttgattt 412  Q
    ||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
20357875 atatcccacattcagttgaaaatgaataagaccaattgggaacacaaacacatcacccttgttgagcactttggtaaagagacgattgttgtcttgattt 20357974  T
413 gatgtgacaaatccaacataaagagtaccttc 444  Q
    || ||||||||||||||||||||||| |||||    
20357975 gaagtgacaaatccaacataaagagtgccttc 20358006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 122 - 444
Target Start/End: Original strand, 6235270 - 6235592
Alignment:
122 atcatgttctccgactagttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaacttcgtctg 221  Q
    |||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
6235270 atcatgttcttcaactagttgttgtcataccaagactgcttttgaagataatcaattatgctcttatccacttgaaaagctttggtaagaacttcgtcgg 6235369  T
222 aaataagaggatcagatttaaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccac 321  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6235370 aaataagcggattagatttaaacaaagcatttgcaacggtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccac 6235469  T
322 attcagctgaaaatgaataagaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtcttgatttgatgtgaca 421  Q
    ||| || ||||||||||||||||| || |||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||| || ||||||    
6235470 atttagttgaaaatgaataagaccaattgggaacacaaacacatcacccttgtttagcactttggtgaagagacgattgttgtcttgattggacgtgaca 6235569  T
422 aatccaacataaagagtaccttc 444  Q
    ||||||||||||||||| |||||    
6235570 aatccaacataaagagtgccttc 6235592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 6235192 - 6235254
Alignment:
27 ttatttattacaataataataagcagagagggttgcttgcacaaggtgattcaaaacctaaag 89  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||    
6235192 ttatttaatacaataataataagtagagagggttggttgcacaaggtgattgaagacctaaag 6235254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0899 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 135 - 256
Target Start/End: Complemental strand, 3265 - 3145
Alignment:
135 actagttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaacttcgtctgaaataagaggatc 234  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||||||| || |||  |||||||||||||||||||||  || |||||| | ||||     
3265 actagttattgtcataccaagactgcttt-gaagataatcaattatgctctaatgcactcgaaaagctttggtaagaactttttcagaaataggcggatt 3167  T
235 agatttaaacaaagcatttgca 256  Q
    ||||||||  ||||||||||||    
3166 agatttaagaaaagcatttgca 3145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 247 - 396
Target Start/End: Original strand, 702379 - 702528
Alignment:
247 agcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaataagaccg 346  Q
    |||||| ||||  ||||| || ||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||||  || || ||||| |||||     
702379 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacca 702478  T
347 atcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacg 396  Q
    || || |||||||||||||| || ||||| ||||| || |||| ||||||    
702479 attggaaacacaaacacatctcctttgttcagtacttttgtaatgagacg 702528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 710676 - 710782
Alignment:
275 ttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaataagaccgatcgggaacacaaacacatcacccttgt 374  Q
    ||||| ||||||||||||||||||||||| || || ||||||||||||||||  || || ||||| ||||| || || |||||||||||||| || ||||    
710676 ttttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaaacacatctcctttgt 710775  T
375 tgagtac 381  Q
    | |||||    
710776 tcagtac 710782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 717709 - 717815
Alignment:
275 ttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaataagaccgatcgggaacacaaacacatcacccttgt 374  Q
    ||||| ||||||||||||||||||||||| || || ||||||||||||||||  || || ||||| ||||| || || |||||||||||||| || ||||    
717709 ttttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaaacacatctcctttgt 717808  T
375 tgagtac 381  Q
    | |||||    
717809 ttagtac 717815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 396
Target Start/End: Complemental strand, 713031 - 712910
Alignment:
275 ttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaataagaccgatcgggaacacaaacacatcacccttgt 374  Q
    ||||| ||||||||||||||||||||||| || || ||||| || |||||||  ||||| ||||| || || || || |||||||||||||| || ||||    
713031 ttttggctgctaagtccagcaatagcaactgcatttccatacccaacattcaattgaaagtgaatgaggccaattggaaacacaaacacatctcctttgt 712932  T
375 tgagtaccttggtaaagagacg 396  Q
    | ||||| || |||| ||||||    
712931 tcagtacttttgtaatgagacg 712910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 14437512 - 14437443
Alignment:
194 tgaaaagctttggtaagaacttcgtctgaaataagaggatcagatttaaacaaagcatttgcaacagtga 263  Q
    |||||||| || ||||||||||  || |||||| | | || ||||||||||||||||||||||| |||||    
14437512 tgaaaagcattcgtaagaactttttcagaaataggtgtattagatttaaacaaagcatttgcaatagtga 14437443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 444
Target Start/End: Complemental strand, 35313753 - 35313550
Alignment:
241 aaacaaagcatttgcaacagtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaata 340  Q
    ||||| |||||||||||  || || ||||| |||||||| || ||||| |||||||| |||| ||| |  ||||| || || ||||  || || |||||     
35313753 aaacacagcatttgcaatggtaatcactccagggttttggctactaagaccagcaatggcaatagcctccccataaccaacgttcaattggaagtgaatg 35313654  T
341 agaccgatcgggaacacaaacacatcacccttgttgagtaccttggtaaagagacgattgttgtcttgatttgatgtgacaaatccaacataaagagtac 440  Q
    |||||||| || |||||||| |||||||| ||||| | ||| ||||| |||||||| || |||||||||||||| |  ||||||||||| ||||| || |    
35313653 agaccgattggaaacacaaatacatcacctttgttcaatactttggtgaagagacggttattgtcttgatttgaggaaacaaatccaacgtaaagtgtgc 35313554  T
441 cttc 444  Q
    ||||    
35313553 cttc 35313550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1230 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1230
Description:

Target: scaffold1230; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 1140 - 1259
Alignment:
138 agttgttgtcataccaagactgtttttgaagataatcaattatgctcttatccacctgaaaagctttggtaagaacttcgtctgaaataagaggatcaga 237  Q
    |||| |||||||| |||||||| |||| |||||||||||||||||| |  || ||  ||||| ||||| |||||||||  |   ||||| | ||   |||    
1140 agttattgtcatatcaagactgcttttaaagataatcaattatgctttagtctactcgaaaaactttgctaagaactttctgaaaaataggcggcgtaga 1239  T
238 tttaaacaaagcatttgcaa 257  Q
    ||||||||||||||||||||    
1240 tttaaacaaagcatttgcaa 1259  T

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