View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_high_12 (Length: 452)
Name: NF2711_high_12
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 9368382 - 9368805
Alignment:
| Q |
18 |
caatggatgaatgtattttgtgataagaaatgtgggacaattattcttcgtttttaaagaaactaaactaatctacctaaattgacatcggaaaaagtaa |
117 |
Q |
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| T |
9368382 |
caatggatgaatgtattttgtgataagaaatgtgggacaattattcttcgtttttaaaaaaactaaactaatctacctaaattgacatcggagaaagtaa |
9368481 |
T |
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| Q |
118 |
aacatgaaattttgagaaggagcaacttctaagtcttaagccaatacggtgagatcaaccgtgcaaaccgatgtgaaatcttgtttttaaccaatgtgaa |
217 |
Q |
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| T |
9368482 |
aacatgaaatcttgagaaggagcaactcctaactcttaagtcaatacggtgagaccaaccgtgcaaaccgatgtgaaatcttgtttttaaccaatgtgaa |
9368581 |
T |
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| Q |
218 |
atcccctttctgtaa---tagtggacnnnnnnnngaatattcttacgatgtgctcctttctttctagtttccacgattacctctttatgaggaaatcttt |
314 |
Q |
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| T |
9368582 |
atcctctttctgtaatactagtggacaaaaaaatgaaacttcttacgatgtgctcctttctttttagtttccacgattacctctttatgaggaaatcatt |
9368681 |
T |
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| Q |
315 |
gagaaacnnnnnnngaagagacacactctaaccattcattattgtttgttttattttattggcaaaattatgattgtgatcttgtaagttaatctttttt |
414 |
Q |
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| T |
9368682 |
gagaaac-aaaaaagaagagacagactctaaccattcattattgtttgttttattttattggcaaaattatgattgtgatcttgtaagttaatctttttt |
9368780 |
T |
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| Q |
415 |
atttcttggattggtccttcaattt |
439 |
Q |
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| T |
9368781 |
atttcttggattggtccttcaattt |
9368805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 9373401 - 9373441
Alignment:
| Q |
396 |
ttgtaagttaatcttttttatttcttggattggtccttcaa |
436 |
Q |
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| T |
9373401 |
ttgtaagttgatcttttttatttcttggattggtccttcaa |
9373441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 15928001 - 15927955
Alignment:
| Q |
19 |
aatggatgaatgtattttgtgataagaaatgtgggacaattattctt |
65 |
Q |
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| T |
15928001 |
aatggatgaatatattttgtgataaaaaatgtgggataattattctt |
15927955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 15930030 - 15929986
Alignment:
| Q |
18 |
caatggatgaatgtattttgtgataagaaatgtgggacaattatt |
62 |
Q |
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| T |
15930030 |
caatggatgaatatattttgtgataaaaaatgtaggacaattatt |
15929986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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