View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2711_high_13 (Length: 429)
Name: NF2711_high_13
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Original strand, 6326790 - 6327190
Alignment:
| Q |
9 |
ttatagcaatacttgttagacaaagaaactaaacaacatgctgaaaaagtaaagatactactactataaactcaaacataaaacacttttttcttagttc |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
6326790 |
ttatagcaataattgttagacaaagaaactaaacaacatgctgaaaaagtaaagatactaatacta--aactaaaaaataaaacacttttttcttagttc |
6326887 |
T |
|
| Q |
109 |
ttgagaatgaaaagtgaaaatactagttctaagctacataacataatagggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaaca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6326888 |
ttgagaatgaaaagtgaaaatactagttctaagctacacaacataatagggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaaca |
6326987 |
T |
|
| Q |
209 |
ccgacctttccatctccaacaggatattctatggtgaattctgccactgagagtactgctttcaaatctttaagagaaggccagccaagaacaacattat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6326988 |
ccgacctttccatctccaacaggatattctatggtgaattctgccactgagagtactgctttcaaatctttaagagaaggccagccaagaacaacattat |
6327087 |
T |
|
| Q |
309 |
aaatagaaacagacggtggcgattcaacgacgaagtacctgaccttgatggttttggtattctcacctttaccaaaagttgtgtccaaatcaatgtatcc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6327088 |
aaatagaaacagacggtggcgattcaacgacgaagtacctgaccttgatggttttggtattctcacctttaccaaaagttgtgtccaaatcaatgtatcc |
6327187 |
T |
|
| Q |
409 |
ttt |
411 |
Q |
| |
|
||| |
|
|
| T |
6327188 |
ttt |
6327190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 116 - 413
Target Start/End: Original strand, 6317650 - 6317950
Alignment:
| Q |
116 |
tgaaaagtgaaaatactagttctaagctacataacataatagggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaacaccgacct |
215 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| | ||| ||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||| |
|
|
| T |
6317650 |
tgaaaagtgaaaatactagttcaaaactacataataaaatggggacacatatcgtgacacttcttggccgtctcaaggtctgcctcgacaacaccgacct |
6317749 |
T |
|
| Q |
216 |
ttccatctccaacaggatattctatggtgaattctgccactgagagt---actgctttcaaatctttaagagaaggccagccaagaacaacattataaat |
312 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||| ||||||| || || |||||||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
6317750 |
ttccatctccaatcgaatattctatggtgaggtctgcccatgagagtcgtacagcattcaaatctttaagtgcaggccagccaagaacaacattaaaaat |
6317849 |
T |
|
| Q |
313 |
agaaacagacggtggcgattcaacgacgaagtacctgaccttgatggttttggtattctcacctttaccaaaagttgtgtccaaatcaatgtatcctttg |
412 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6317850 |
agaaaaagacggtgccgactcaacgacgaagtacctgaccttgatggttttggtattctcacctttaccaaaagttgtgtccaaatcaatgtatcctttg |
6317949 |
T |
|
| Q |
413 |
a |
413 |
Q |
| |
|
| |
|
|
| T |
6317950 |
a |
6317950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 6329927 - 6330014
Alignment:
| Q |
158 |
ggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaacaccgacctttccatctccaacaggatattctatggtga |
245 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| || |||||| ||||| || |||||||||||||||| |||||||| ||||||| |
|
|
| T |
6329927 |
ggacgcatttcgtaacacttcttagccatctcaagatctgccctaacaactccaacctttccatctccaagaggatatttcatggtga |
6330014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 6309938 - 6310002
Alignment:
| Q |
172 |
acacttcttagccatctcgaggtctgcctcgacaacaccgacctttccatctccaacaggatatt |
236 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||| |||||| |||||||||||| |||||||| |
|
|
| T |
6309938 |
acactttttcgccatctcgaggtctgccttgacaagtccgaccattccatctccaataggatatt |
6310002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 55 - 236
Target Start/End: Original strand, 39832535 - 39832713
Alignment:
| Q |
55 |
aagtaaagatactactactataaactcaaacataaaacacttttttcttagttcttgagaatgaaaagtgaaaatactagttctaagctacataacataa |
154 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39832535 |
aagtaaagatactacttcta--aactcaaacataaaacacttttttcttagttcttgagaatgaaaagtgaaaatactacttctaagctacataacataa |
39832632 |
T |
|
| Q |
155 |
tagggacacatttcgtgacacttcttagccatctcgaggtctgcctcgacaacaccgacctttccatctccaacaggatatt |
236 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||||| |
|
|
| T |
39832633 |
aaggaacacatctcgtgacacttcttagccatctcaaggtctgcctcgacaacacc-acctttccatttccaacgggatatt |
39832713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University