View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2711_high_16 (Length: 399)

Name: NF2711_high_16
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2711_high_16
NF2711_high_16
[»] chr1 (25 HSPs)
chr1 (23-381)||(35295002-35295363)
chr1 (127-215)||(35213583-35213671)
chr1 (65-200)||(45526140-45526275)
chr1 (57-197)||(35272851-35272991)
chr1 (61-194)||(35203115-35203248)
chr1 (127-215)||(35206425-35206513)
chr1 (127-215)||(35216972-35217060)
chr1 (65-194)||(45534344-45534473)
chr1 (61-193)||(35192775-35192907)
chr1 (65-194)||(35476933-35477062)
chr1 (69-215)||(35145170-35145316)
chr1 (110-196)||(35228428-35228514)
chr1 (127-192)||(8640315-8640380)
chr1 (62-189)||(35265294-35265421)
chr1 (287-377)||(35273051-35273141)
chr1 (287-358)||(35228617-35228688)
chr1 (127-197)||(35222789-35222859)
chr1 (288-381)||(35207111-35207204)
chr1 (287-377)||(35265522-35265612)
chr1 (149-198)||(35253958-35254007)
chr1 (121-159)||(19267395-19267433)
chr1 (61-147)||(35148863-35148949)
chr1 (284-358)||(35222950-35223024)
chr1 (287-375)||(35146144-35146232)
chr1 (308-380)||(35254098-35254170)
[»] chr2 (3 HSPs)
chr2 (125-197)||(33137636-33137708)
chr2 (287-355)||(33136774-33136842)
chr2 (316-375)||(18558273-18558332)
[»] chr3 (4 HSPs)
chr3 (116-197)||(17663857-17663938)
chr3 (116-197)||(19246358-19246439)
chr3 (110-220)||(898894-899004)
chr3 (125-197)||(53921108-53921180)
[»] chr7 (1 HSPs)
chr7 (126-171)||(38635326-38635371)


Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 23 - 381
Target Start/End: Complemental strand, 35295363 - 35295002
Alignment:
Q  23 caaaggtaataggtaataatataatataaacttaaaagagctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35295363 caaaggtaataggtaataatataatataaacttaaaagagctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaa 35295264  T
Q  123 tagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttccaaagctt---attagcat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  35295263 tagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttccaaagcttattattagcat 35295164  T
Q  220 tttgaagtttgaactattcatttgaaacaacgtacaccaactttttgtacaataatcagttcagatgatacctttttaccatggtcaatgatcatagggc 319  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||    
T  35295163 tttgaagtttgaaatattcatttgaaacaacgtacaccaactttttgtacaataattaattcagatgatacctttttaccatggtcaatgattatagggc 35295064  T
Q  320 gatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattgt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35295063 gatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattgt 35295002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 35213583 - 35213671
Alignment:
Q  127 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttccaaagcttatta 215  Q
    ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35213583 gagagatctagcagcaagcatataacatttttttccactttttctctccaattgaaagctctgcatttcaatatttccaaagtttatta 35213671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 45526140 - 45526275
Alignment:
Q  65 aacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccac 164  Q
    |||||||||||| |||||| | ||||| |||||| ||| |||   ||||||||| ||||   ||||||||||||||||||||| ||||||||||| ||||    
T  45526140 aacctggaatcaggcatagcagtccagatccaatagcggtcatcatcaccccaaataatgtggagagatctagcagcaagcatgtaacacttttttccac 45526239  T
Q  165 tctttctctccaattgaaagctctgcatttcaatat 200  Q
    ||||||| ||||||||||||||||||||||||||||    
T  45526240 tctttctatccaattgaaagctctgcatttcaatat 45526275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 57 - 197
Target Start/End: Original strand, 35272851 - 35272991
Alignment:
Q  57 aaagagctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactt 156  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||   |   |||||||||  ||| |  ||||||||||||| |||||| ||||||||    
T  35272851 aaagagctaacctggaatcaggcatagaaatccagttccaatagcgtctatcatcaccccaaacaattgcaagagatctagcagaaagcatgtaacactt 35272950  T
Q  157 tttcccactctttctctccaattgaaagctctgcatttcaa 197  Q
    ||| |||||||||||||| ||||||| ||||||||||||||    
T  35272951 ttttccactctttctctctaattgaatgctctgcatttcaa 35272991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 35203115 - 35203248
Alignment:
Q  61 agctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttc 160  Q
    |||||||||||||||| |||||| ||||||||||||||  || |||   | |||||||  ||| | ||||||||||||||||||||| |||||||||||     
T  35203115 agctaacctggaatcaggcatagcaatccagttccaatatcgatcatcattaccccaagcaatggagagagatctagcagcaagcatgtaacactttttt 35203214  T
Q  161 ccactctttctctccaattgaaagctctgcattt 194  Q
    ||||||||||| |||||||||| |||||||||||    
T  35203215 ccactctttctatccaattgaatgctctgcattt 35203248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 35206425 - 35206513
Alignment:
Q  127 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttccaaagcttatta 215  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||    
T  35206425 gagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttcaatatttccaaagcttatta 35206513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 35216972 - 35217060
Alignment:
Q  127 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaatatttccaaagcttatta 215  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||    
T  35216972 gagagatctagcagaaagcatgtaacacttttttccactctttctatccaattggaaactctgcatttcaatatttccaaagcttatta 35217060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 45534344 - 45534473
Alignment:
Q  65 aacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccac 164  Q
    |||||||||||| |||||| |||||||||||| | ||| |     ||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||    
T  45534344 aacctggaatcaggcatagcaatccagttccagtagcggttgtcatcaccccaagtaatggcgagagatctagcagcaagcatgtaacactttttcccac 45534443  T
Q  165 tctttctctccaattgaaagctctgcattt 194  Q
    | ||||| || |||||||||||||||||||    
T  45534444 tatttctatctaattgaaagctctgcattt 45534473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 61 - 193
Target Start/End: Original strand, 35192775 - 35192907
Alignment:
Q  61 agctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttc 160  Q
    ||||||||| |||| | ||||||||||||||||||||| |||   |   |||||||||  ||| | |||||||||||||||||||||||||||||||||     
T  35192775 agctaacctagaattaggcatagaaatccagttccaatagcgtcgatcatcaccccaagcaatggagagagatctagcagcaagcatataacactttttt 35192874  T
Q  161 ccactctttctctccaattgaaagctctgcatt 193  Q
    |||||||| || |||||||||||||||| ||||    
T  35192875 ccactcttcctatccaattgaaagctctacatt 35192907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 35476933 - 35477062
Alignment:
Q  65 aacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccac 164  Q
    |||||||||||| | | || ||||||||| ||||  || |||   |||||||||  ||| | ||||||||||||||||||||| ||||||||||||||||    
T  35476933 aacctggaatcaggtacagcaatccagttgcaatatcgatcatcatcaccccaagcaatggcgagagatctagcagcaagcatgtaacactttttcccac 35477032  T
Q  165 tctttctctccaattgaaagctctgcattt 194  Q
    ||||||| |||||||||| |||||||||||    
T  35477033 tctttctatccaattgaaggctctgcattt 35477062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 69 - 215
Target Start/End: Original strand, 35145170 - 35145316
Alignment:
Q  69 tggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccactctt 168  Q
    |||||||||||| || ||||||||| ||||  || |||   |||| ||||  ||| | |||||||||||||| || ||| ||||||||||| | |||||     
T  35145170 tggaatcatgcacagcaatccagttgcaatatcgatcatcatcactccaagcaatggcgagagatctagcagaaaccatgtaacacttttttctactctc 35145269  T
Q  169 tctctccaattgaaagctctgcatttcaatatttccaaagcttatta 215  Q
    ||| | |||||||||||| ||||||||||||||||||||||||||||    
T  35145270 tctattcaattgaaagctttgcatttcaatatttccaaagcttatta 35145316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 35228428 - 35228514
Alignment:
Q  110 tcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttca 196  Q
    ||||||||| |||| |  ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| |||| |||||||    
T  35228428 tcaccccaagtaatggcaagagatctagcagaaagcatataacacttctttccactctttctctccaattgaaaactctacatttca 35228514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 8640315 - 8640380
Alignment:
Q  127 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcat 192  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||||||    
T  8640315 gagagatctagcagcaagcatgtaacacttttttccactctttctgtccaattgaacgctctgcat 8640380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 189
Target Start/End: Original strand, 35265294 - 35265421
Alignment:
Q  62 gctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcatataacactttttcc 161  Q
    ||||||||||||||| ||| || |||||||||||| | | ||| ||  |||||||||  ||| |  ||||||||||||| |||||| ||||||||||| |    
T  35265294 gctaacctggaatcaggcaaaggaatccagttccagtagtgcttagtatcaccccaaacaattgcaagagatctagcagaaagcatgtaacacttttttc 35265393  T
Q  162 cactctttctctccaattgaaagctctg 189  Q
    |||||||||| |||||||| || |||||    
T  35265394 cactctttctgtccaattggaaactctg 35265421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 35273051 - 35273141
Alignment:
Q  287 atacctttttaccatggtcaatgatcatagggcgatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaaggaga 377  Q
    ||||||||||| |||| || ||||| | ||||||||||||||| || ||||| |||||||||||||||||||  |||  ||||||||||||    
T  35273051 atacctttttatcatgatcgatgatgacagggcgatcagatagagcaagatagagatcctttttggtaggaatgttggtaagggaaggaga 35273141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 35228617 - 35228688
Alignment:
Q  287 atacctttttaccatggtcaatgatcatagggcgatcagatagggcgagataaagatcctttttggtaggaa 358  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||| || | ||| ||||| |||||||||||||    
T  35228617 atacctttttaccattgtcgatgatgatagggcgatcagatagagcaatatagagatcttttttggtaggaa 35228688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 35222789 - 35222859
Alignment:
Q  127 gagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 197  Q
    |||||||||||||||||||||   ||||||||| ||||||||||| |||||||||| |||||  |||||||    
T  35222789 gagagatctagcagcaagcatgacacacttttttccactctttctatccaattgaacgctcttaatttcaa 35222859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 381
Target Start/End: Original strand, 35207111 - 35207204
Alignment:
Q  288 tacctttttaccatggtcaatgatcatagggcgatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattgt 381  Q
    |||||||| ||||||  ||||||| ||||| |||||||| || |||||||| ||| |||||||||| ||||  ||| |||| ||||||||||||    
T  35207111 taccttttgaccatgagcaatgatgataggacgatcagagagagcgagatagagagcctttttggttggaatgttggcaagtgaaggagattgt 35207204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 377
Target Start/End: Original strand, 35265522 - 35265612
Alignment:
Q  287 atacctttttaccatggtcaatgatcatagggcgatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaaggaga 377  Q
    ||||||||||| |||| || ||||| ||||| |||||||| || |||||||| ||| | |||||||||||| | ||| |||| ||||||||    
T  35265522 atacctttttatcatgatcgatgatgataggacgatcagagagagcgagatacagagcttttttggtaggagcgttggcaagtgaaggaga 35265612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 35253958 - 35254007
Alignment:
Q  149 taacactttttcccactctttctctccaattgaaagctctgcatttcaat 198  Q
    ||||| ||||| ||||||||||| ||||||||||| ||||||||||||||    
T  35253958 taacaattttttccactctttctatccaattgaaaactctgcatttcaat 35254007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 19267433 - 19267395
Alignment:
Q  121 aatagtgagagatctagcagcaagcatataacacttttt 159  Q
    |||||||||||||||||||||||| || |||||||||||    
T  19267433 aatagtgagagatctagcagcaagaatgtaacacttttt 19267395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 147
Target Start/End: Original strand, 35148863 - 35148949
Alignment:
Q  61 agctaacctggaatcatgcatagaaatccagttccaatggcgctcagagtcaccccaattaatagtgagagatctagcagcaagcat 147  Q
    |||||||||||| ||| |||||  |||||||||||||| ||||| |   |||||||||  |||  ||||||||||||||| ||||||    
T  35148863 agctaacctggagtcaggcatattaatccagttccaatagcgcttatcatcaccccaagcaatgctgagagatctagcagaaagcat 35148949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 35222950 - 35223024
Alignment:
Q  284 atgatacctttttaccatggtcaatgatcatagggcgatcagatagggcgagataaagatcctttttggtaggaa 358  Q
    |||||||||||||||||| ||| ||||| |||||| ||| ||| ||||| ||||| |||  |||||| |||||||    
T  35222950 atgatacctttttaccatcgtcgatgatgatagggtgattagagagggcaagatagagagacttttttgtaggaa 35223024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 375
Target Start/End: Complemental strand, 35146232 - 35146144
Alignment:
Q  287 atacctttttaccatggtcaatgatcatagggcgatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaagga 375  Q
    ||||||||| |||||| || ||||| |||||  ||||| | || |||||||| ||| |||||||||| ||||  ||| |||||||||||    
T  35146232 ataccttttgaccatgatcgatgatgataggatgatcatagagagcgagatagagagcctttttggttggaatgttggcaagggaagga 35146144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 380
Target Start/End: Original strand, 35254098 - 35254170
Alignment:
Q  308 tgatcatagggcgatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattg 380  Q
    |||| ||| ||| ||||||||| |||||||| |||||||||||||| | | | ||| ||||||||||| ||||    
T  35254098 tgatgatacggcaatcagatagagcgagatagagatcctttttggtggaagcattggcaagggaaggaaattg 35254170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 33137708 - 33137636
Alignment:
Q  125 gtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 197  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||| | |||||||||||||||||||||||    
T  33137708 gtgagagatctagcagcaagcatgtaacacttttgtccactctttctgtgcaattgaaagctctgcatttcaa 33137636  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 33136842 - 33136774
Alignment:
Q  287 atacctttttaccatggtcaatgatcatagggcgatcagatagggcgagataaagatcctttttggtag 355  Q
    ||||||||||||||| ||| ||||| ||| ||||||||||||| |||||||||||| | ||||||||||    
T  33136842 atacctttttaccattgtcgatgatgatatggcgatcagatagagcgagataaagagcttttttggtag 33136774  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 18558332 - 18558273
Alignment:
Q  316 gggcgatcagatagggcgagataaagatcctttttggtaggaactttgacaagggaagga 375  Q
    ||||||||||||||||||||||| ||| |||||||||| ||| | ||| ||| |||||||    
T  18558332 gggcgatcagatagggcgagatagagagcctttttggttggagcgttggcaatggaagga 18558273  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 17663938 - 17663857
Alignment:
Q  116 caattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 197  Q
    |||| ||| ||||||||||||||||||||||  |||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  17663938 caatcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 17663857  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 19246439 - 19246358
Alignment:
Q  116 caattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 197  Q
    |||| ||| ||||||||||||||||||||||  |||||||| |  ||||||||||| | |||||||||||||||||||||||    
T  19246439 caatcaatggtgagagatctagcagcaagcaggtaacacttctgtccactctttctttgcaattgaaagctctgcatttcaa 19246358  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 899004 - 898894
Alignment:
Q  110 tcaccccaattaatagtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttca-atatttccaaag 208  Q
    ||||| |||| ||| ||||||||||| ||||||||||| |||||  |||| ||||| || || ||||||| ||||||||| |||||| ||| ||| || |    
T  899004 tcaccgcaatgaatggtgagagatctggcagcaagcatgtaacatatttttccacttttcctatccaatttaaagctctgaatttcatata-ttcaaagg 898906  T
Q  209 cttattagcatt 220  Q
    ||||||||||||    
T  898905 cttattagcatt 898894  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 53921180 - 53921108
Alignment:
Q  125 gtgagagatctagcagcaagcatataacactttttcccactctttctctccaattgaaagctctgcatttcaa 197  Q
    |||||||  ||||||| ||||||  |||| ||||||||||||||||| ||||||||||   ||||||||||||    
T  53921180 gtgagagccctagcagaaagcatgcaacattttttcccactctttctatccaattgaataatctgcatttcaa 53921108  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 38635326 - 38635371
Alignment:
Q  126 tgagagatctagcagcaagcatataacactttttcccactctttct 171  Q
    |||||||| |||||||||| || ||||||||||| |||||||||||    
T  38635326 tgagagatttagcagcaagaatgtaacacttttttccactctttct 38635371  T

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