View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2711_high_18 (Length: 366)

Name: NF2711_high_18
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2711_high_18
NF2711_high_18
[»] chr2 (37 HSPs)
chr2 (62-253)||(3888680-3888870)
chr2 (116-275)||(27414044-27414202)
chr2 (118-275)||(44721346-44721502)
chr2 (118-299)||(6590559-6590726)
chr2 (121-269)||(19159533-19159680)
chr2 (121-275)||(36210351-36210507)
chr2 (245-365)||(3889186-3889292)
chr2 (118-236)||(11941550-11941668)
chr2 (198-306)||(12497264-12497372)
chr2 (118-180)||(35310312-35310374)
chr2 (198-273)||(28813416-28813491)
chr2 (114-159)||(10500447-10500492)
chr2 (240-310)||(25904818-25904888)
chr2 (122-155)||(1705097-1705130)
chr2 (121-153)||(16550211-16550243)
chr2 (113-153)||(25083712-25083752)
chr2 (121-153)||(32656246-32656278)
chr2 (118-153)||(410031-410066)
chr2 (118-153)||(4860446-4860481)
chr2 (121-188)||(40534329-40534396)
chr2 (118-153)||(44068775-44068810)
chr2 (119-153)||(25626606-25626640)
chr2 (122-188)||(32227547-32227613)
chr2 (118-155)||(5559709-5559746)
chr2 (198-275)||(9374052-9374129)
chr2 (121-158)||(11941495-11941532)
chr2 (118-155)||(12972687-12972724)
chr2 (198-275)||(32656268-32656345)
chr2 (211-272)||(33830307-33830368)
chr2 (147-179)||(10399525-10399557)
chr2 (119-159)||(14776411-14776451)
chr2 (121-153)||(25083853-25083885)
chr2 (121-153)||(30354058-30354090)
chr2 (121-153)||(35310196-35310228)
chr2 (119-155)||(36528478-36528514)
chr2 (119-159)||(41465382-41465422)
chr2 (211-299)||(45075653-45075741)
[»] chr5 (15 HSPs)
chr5 (124-275)||(3344865-3345015)
chr5 (113-247)||(28085220-28085353)
chr5 (118-274)||(42655898-42656053)
chr5 (118-254)||(25037238-25037373)
chr5 (118-275)||(32135831-32135986)
chr5 (113-248)||(13789602-13789731)
chr5 (198-275)||(2903374-2903451)
chr5 (118-155)||(29429737-29429774)
chr5 (198-263)||(39796032-39796097)
chr5 (198-299)||(10333782-10333883)
chr5 (198-275)||(16285911-16285988)
chr5 (118-153)||(28735266-28735301)
chr5 (118-155)||(12289131-12289168)
chr5 (121-153)||(13789897-13789929)
chr5 (198-273)||(21369139-21369215)
[»] chr6 (8 HSPs)
chr6 (118-299)||(154187-154367)
chr6 (136-184)||(9464649-9464697)
chr6 (118-184)||(7269671-7269737)
chr6 (118-179)||(33972586-33972647)
chr6 (114-152)||(11109056-11109094)
chr6 (124-153)||(13243874-13243903)
chr6 (125-153)||(3159579-3159607)
chr6 (108-188)||(12141677-12141757)
[»] chr1 (28 HSPs)
chr1 (138-272)||(51672741-51672874)
chr1 (118-275)||(13132099-13132255)
chr1 (118-272)||(7648667-7648820)
chr1 (118-274)||(27211327-27211483)
chr1 (145-272)||(2614827-2614953)
chr1 (118-188)||(52141471-52141541)
chr1 (118-272)||(3491408-3491560)
chr1 (212-305)||(8550380-8550473)
chr1 (121-188)||(48022823-48022890)
chr1 (118-184)||(48217530-48217597)
chr1 (118-188)||(21276535-21276605)
chr1 (121-153)||(298201-298233)
chr1 (219-307)||(5198785-5198873)
chr1 (198-262)||(7473228-7473292)
chr1 (121-153)||(32544774-32544806)
chr1 (112-256)||(12521330-12521473)
chr1 (122-153)||(18436296-18436327)
chr1 (122-153)||(32441614-32441645)
chr1 (119-188)||(298310-298380)
chr1 (109-159)||(5198934-5198984)
chr1 (119-188)||(943196-943265)
chr1 (199-272)||(49872192-49872265)
chr1 (121-153)||(3491553-3491585)
chr1 (125-153)||(15881241-15881269)
chr1 (121-153)||(32441746-32441778)
chr1 (121-153)||(39412441-39412473)
chr1 (125-153)||(43949207-43949235)
chr1 (125-153)||(51295704-51295732)
[»] chr4 (37 HSPs)
chr4 (118-304)||(17268771-17268955)
chr4 (121-275)||(52278969-52279123)
chr4 (118-299)||(41460531-41460711)
chr4 (202-275)||(26889935-26890008)
chr4 (146-257)||(11348008-11348119)
chr4 (198-304)||(51675869-51675974)
chr4 (118-304)||(30537920-30538106)
chr4 (118-306)||(22409324-22409511)
chr4 (198-304)||(32055078-32055184)
chr4 (123-275)||(32318539-32318690)
chr4 (118-188)||(38794106-38794176)
chr4 (118-159)||(20574851-20574892)
chr4 (138-179)||(26889578-26889619)
chr4 (118-155)||(28675678-28675715)
chr4 (118-155)||(50297630-50297667)
chr4 (121-274)||(53039377-53039531)
chr4 (220-299)||(26533186-26533265)
chr4 (118-180)||(4960348-4960410)
chr4 (106-155)||(54997683-54997732)
chr4 (118-275)||(10109243-10109399)
chr4 (121-153)||(22409470-22409502)
chr4 (113-153)||(39414519-39414559)
chr4 (118-153)||(22019522-22019557)
chr4 (106-153)||(30617530-30617577)
chr4 (198-273)||(41069072-41069147)
chr4 (122-153)||(45219923-45219954)
chr4 (122-153)||(47388589-47388620)
chr4 (122-153)||(53133594-53133625)
chr4 (121-159)||(30255184-30255222)
chr4 (118-155)||(2554065-2554102)
chr4 (118-159)||(42898963-42899004)
chr4 (121-153)||(564107-564139)
chr4 (121-153)||(4960499-4960531)
chr4 (121-153)||(25435753-25435785)
chr4 (121-153)||(26533231-26533263)
chr4 (121-153)||(26889998-26890030)
chr4 (122-150)||(34291364-34291392)
[»] scaffold1157 (2 HSPs)
scaffold1157 (118-275)||(1860-2016)
scaffold1157 (121-152)||(2007-2038)
[»] chr3 (31 HSPs)
chr3 (118-275)||(38773534-38773690)
chr3 (134-299)||(21290141-21290305)
chr3 (118-275)||(37238761-37238917)
chr3 (118-256)||(25556455-25556593)
chr3 (122-256)||(12736089-12736222)
chr3 (118-275)||(28945845-28946000)
chr3 (118-159)||(51980687-51980728)
chr3 (118-159)||(13863584-13863625)
chr3 (122-184)||(30352883-30352946)
chr3 (118-188)||(972521-972591)
chr3 (118-188)||(28963357-28963427)
chr3 (118-159)||(43310592-43310633)
chr3 (118-155)||(45054767-45054804)
chr3 (121-153)||(12568749-12568781)
chr3 (121-153)||(13545213-13545245)
chr3 (118-154)||(24355450-24355486)
chr3 (121-153)||(28451858-28451890)
chr3 (121-153)||(30578754-30578786)
chr3 (202-273)||(11042747-11042818)
chr3 (116-175)||(35982381-35982440)
chr3 (118-153)||(50129175-50129210)
chr3 (213-300)||(50699805-50699892)
chr3 (121-155)||(37311771-37311805)
chr3 (118-152)||(37387475-37387509)
chr3 (216-270)||(44234448-44234502)
chr3 (116-153)||(32308997-32309034)
chr3 (198-275)||(36923581-36923658)
chr3 (118-159)||(52915451-52915492)
chr3 (121-153)||(972413-972445)
chr3 (121-153)||(37238907-37238939)
chr3 (123-159)||(52378712-52378748)
[»] chr7 (29 HSPs)
chr7 (119-306)||(21388009-21388195)
chr7 (118-305)||(38073567-38073753)
chr7 (121-301)||(31418043-31418220)
chr7 (198-274)||(45278724-45278800)
chr7 (120-190)||(39854083-39854153)
chr7 (118-275)||(10679121-10679278)
chr7 (118-159)||(11667121-11667162)
chr7 (118-159)||(20884451-20884492)
chr7 (121-157)||(38073709-38073745)
chr7 (119-161)||(45278827-45278869)
chr7 (118-155)||(7907583-7907620)
chr7 (118-179)||(8073529-8073590)
chr7 (118-159)||(38652632-38652673)
chr7 (118-155)||(45837939-45837976)
chr7 (122-153)||(17354485-17354516)
chr7 (118-153)||(25119872-25119907)
chr7 (122-153)||(36827792-36827823)
chr7 (112-155)||(42121447-42121490)
chr7 (118-153)||(43131881-43131916)
chr7 (122-153)||(48633903-48633934)
chr7 (105-159)||(31009905-31009959)
chr7 (118-152)||(39837394-39837428)
chr7 (121-179)||(45513089-45513147)
chr7 (118-159)||(21148528-21148569)
chr7 (118-155)||(48723227-48723264)
chr7 (121-153)||(19370150-19370182)
chr7 (121-153)||(32546839-32546871)
chr7 (113-153)||(32786923-32786963)
chr7 (121-153)||(41888934-41888966)
[»] chr8 (29 HSPs)
chr8 (122-299)||(24991727-24991904)
chr8 (140-304)||(17867437-17867600)
chr8 (202-299)||(2539835-2539931)
chr8 (118-275)||(11257879-11258034)
chr8 (198-269)||(31451294-31451365)
chr8 (118-184)||(2540225-2540291)
chr8 (154-274)||(38730197-38730316)
chr8 (142-250)||(40037507-40037615)
chr8 (113-158)||(9402859-9402904)
chr8 (114-155)||(14055906-14055947)
chr8 (118-159)||(26014840-26014881)
chr8 (118-238)||(3447428-3447545)
chr8 (119-159)||(31451376-31451416)
chr8 (118-178)||(38869877-38869937)
chr8 (118-157)||(30069696-30069735)
chr8 (118-179)||(36660701-36660762)
chr8 (121-153)||(11257857-11257889)
chr8 (118-157)||(7107435-7107474)
chr8 (118-153)||(8114297-8114332)
chr8 (113-184)||(22489084-22489155)
chr8 (198-272)||(1042780-1042854)
chr8 (118-152)||(9399661-9399695)
chr8 (118-188)||(36068414-36068484)
chr8 (118-159)||(5895992-5896033)
chr8 (211-280)||(7107518-7107587)
chr8 (118-159)||(40651748-40651789)
chr8 (121-153)||(2539837-2539869)
chr8 (118-158)||(8072435-8072474)
chr8 (121-153)||(30069843-30069875)
[»] scaffold0464 (1 HSPs)
scaffold0464 (129-304)||(6672-6847)
[»] scaffold0217 (1 HSPs)
scaffold0217 (118-275)||(21361-21519)
[»] scaffold0524 (1 HSPs)
scaffold0524 (211-269)||(1494-1552)
[»] scaffold0129 (1 HSPs)
scaffold0129 (198-272)||(37553-37627)
[»] scaffold0061 (1 HSPs)
scaffold0061 (114-176)||(9067-9129)
[»] scaffold0008 (1 HSPs)
scaffold0008 (121-155)||(240565-240599)
[»] scaffold0154 (1 HSPs)
scaffold0154 (198-275)||(36406-36483)
[»] scaffold0007 (1 HSPs)
scaffold0007 (118-159)||(260289-260330)
[»] scaffold0102 (2 HSPs)
scaffold0102 (118-159)||(21372-21413)
scaffold0102 (219-303)||(21229-21313)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 7e-68; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 62 - 253
Target Start/End: Original strand, 3888680 - 3888870
Alignment:
Q  62 acattgaaaattgttcatgcaaattaaactcatatattcagattattaataaatgagtcatgttaacttgtgcccttagggcacatgttaagcattaaat 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||    
T  3888680 acattgaaaattgttcatgcaaattaaactcatatattcagattattaataaatgagtcatgttaatttgtgccctcagggcacatattaaacattaaat 3888779  T
Q  162 tcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaataaattaacgcaatttctgagacataatttcta 253  Q
    |||||||||||||| ||| || ||||||        |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3888780 tcttgccactaatgataagta-ttaattaaaaaaaattaatattagattttttaagcaataaattaacgcaatttccgagacataatttcta 3888870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 116 - 275
Target Start/End: Original strand, 27414044 - 27414202
Alignment:
Q  116 gagtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagatttttta 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||       |||||||||||||||||     
T  27414044 gagtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccattaatggtaagtatt-aattgaaaaaaattaatattagattttttg 27414142  T
Q  216 agcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    |||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  27414143 agcaataaatgaacgcaatttccgagacataatttttattagtgaaatccttaacatgtg 27414202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 44721346 - 44721502
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||  | |||||||       |||||||||  |||||| ||    
T  44721346 gtcatgttaacttgtgcccttagagcacatgttaagcattaaattcttaccactaatggtaagca-ttaattgaaaaaaattaatattaactttttttag 44721444  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
     |||||||||||  |||||  || ||||||||| ||||| |||||||| |||||||||    
T  44721445 taataaattaacagaattttcgatacataatttttattagtgaaatccataacatgtg 44721502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 299
Target Start/End: Original strand, 6590559 - 6590726
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| |||||| |||||  ||| |               ||||||||||| ||||| ||    
T  6590559 gtcatgttaacttgtgcctttagggcacacgttaagcattaaatttttgccattaatgaaaaaaa--------------attaatattagaattttttag 6590644  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattt 299  Q
    |||||||||||| |||||||||| ||||||||||||||| || ||||||||||||||| ||||  || |||| |||||||||    
T  6590645 caataaattaacacaatttctgaaacataatttctattagtggaatccttaacatgtgtcataagggcacaagttaacattt 6590726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 269
Target Start/End: Complemental strand, 19159680 - 19159533
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaa 220  Q
    ||||||||||||||  | |||| |||||||||  ||||||||||| |||||||| |||| |||| |||||       ||||||||||| ||||| |||||    
T  19159680 atgttaacttgtgctataagggtacatgttaaatattaaattcttaccactaatagtaagtatt-aattggaaaaaattaatattagaatttttgagcaa 19159582  T
Q  221 taaattaacgcaatttctgagacataatttctattaatgaaatccttaa 269  Q
    |||| |||| ||||||  ||||||||||||||| |||||||||||||||    
T  19159581 taaagtaacacaattttcgagacataatttctactaatgaaatccttaa 19159533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 275
Target Start/End: Complemental strand, 36210507 - 36210351
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnn---ttaatattagattttttaag 217  Q
    ||||||||||||||||| | || ||||| ||||||||||||||||||||| |||||||| | ||||||||          ||||||||||| ||||| ||    
T  36210507 atgttaacttgtgccctaaaggtacatggtaagcattaaattcttgccaccaatggtaagt-tttaattgaaaaaaaaaattaatattagaatttttgag 36210409  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    ||||||| |||| |||||| ||||||||||||| || |||| |||| |||||||||||    
T  36210408 caataaaataacacaatttttgagacataatttttactaataaaattcttaacatgtg 36210351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 365
Target Start/End: Original strand, 3889186 - 3889292
Alignment:
Q  245 taatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttccttaataaatttataaaagaaatcaactttttcgataataaat 344  Q
    |||||||||||| ||||||||||||||| || |||| |||||||| ||||||||||              ||||||||||||||||||||||||||||||    
T  3889186 taatttctattagtgaaatccttaacatatgccataaaggtacaagttaacatttt--------------taaaagaaatcaactttttcgataataaat 3889271  T
Q  345 ataaaaattaattgtttgtaa 365  Q
    |||||||||||||||||||||    
T  3889272 ataaaaattaattgtttgtaa 3889292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 11941668 - 11941550
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattg-nnnnnnnttaatattagattttttaa 216  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||| || |||||||        ||||||||| ||||||| |    
T  11941668 gtcatgttaaattgtgcctttaggacacatgttaagcattaaattcttgccactaatgataagta-ttaattgaaaaaaaattaatattaaattttttga 11941570  T
Q  217 gcaataaattaacgcaattt 236  Q
     |||||||||||||||||||    
T  11941569 acaataaattaacgcaattt 11941550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 12497372 - 12497264
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacat 297  Q
    ||||||||| |  ||||||||||||||||||| ||||||| || |||| ||||||||||  | ||| ||||||||||| | ||  || ||||||||||||    
T  12497372 ttaatattaaacattttaagcaataaattaacacaatttccgacacatgatttctattagcggaattcttaacatgtgtcctaagggcacaaattaacat 12497273  T
Q  298 tttccttaa 306  Q
    |||||||||    
T  12497272 tttccttaa 12497264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 35310374 - 35310312
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaa 180  Q
    |||||||||||||||| ||||||||||||||| ||||||||| ||| || |||||||||||||    
T  35310374 gtcatgttaacttgtgtccttagggcacatgtgaagcattaatttcatgtcactaatggtaaa 35310312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 28813491 - 28813416
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatg 273  Q
    ||||||||| ||| ||||||||||||||||||  |||||| || ||||| ||| ||||||||||||| ||||||||    
T  28813491 ttaatattaaattctttaagcaataaattaacataatttccgatacatattttttattaatgaaatctttaacatg 28813416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 10500492 - 10500447
Alignment:
Q  114 atgagtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||    
T  10500492 atgagtcatgttaacttgtgccgttaaggcacatgttaagcattaa 10500447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 25904888 - 25904818
Alignment:
Q  240 agacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttccttaataaa 310  Q
    ||||||||||||||| | |||||| ||||||||||||| ||   |||||||||||||||| ||||| ||||    
T  25904888 agacataatttctatcagtgaaattcttaacatgtgacctaagagtacaaattaacatttcccttagtaaa 25904818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 1705130 - 1705097
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgttaagca 155  Q
    ||||||||||||||||||||||||||||||||||    
T  1705130 tgttaacttgtgcccttagggcacatgttaagca 1705097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 16550211 - 16550243
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||||||    
T  16550211 atgttaacttgtgcccttagggcacatgttaag 16550243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 25083712 - 25083752
Alignment:
Q  113 aatgagtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  25083712 aatgagtcttgttaacttgtgaccttagggcacatgttaag 25083752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 32656246 - 32656278
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||||||    
T  32656246 atgttaacttgtgcccttagggcacatgttaag 32656278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 410066 - 410031
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||| |||||||||||||||    
T  410066 gtcatgttaacttgtgccctaagggcacatgttaag 410031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 4860446 - 4860481
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||| ||||||    
T  4860446 gtcatgttaacttgtgcccttagggcacaagttaag 4860481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 40534396 - 40534329
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaat 188  Q
    |||||||||||||| ||||||||||||||||| |||||| ||| | ||| |||| ||||  |||||||    
T  40534396 atgttaacttgtgctcttagggcacatgttaaacattaatttcataccattaatagtaagaatttaat 40534329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 44068775 - 44068810
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||| |||||||||||||||    
T  44068775 gtcatgttaacttgtgccctaagggcacatgttaag 44068810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 25626640 - 25626606
Alignment:
Q  119 tcatgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||| |||||||||||||||    
T  25626640 tcatgttaacttgtgccctaagggcacatgttaag 25626606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 32227613 - 32227547
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaat 188  Q
    |||||| ||||||  ||||||||||||||||||||||| ||| | ||| |||||||||  |||||||    
T  32227613 tgttaatttgtgcttttagggcacatgttaagcattaatttcattccattaatggtaataatttaat 32227547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 5559746 - 5559709
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    ||||||||||||||||| || |||||||||||||||||    
T  5559746 gtcatgttaacttgtgctctaagggcacatgttaagca 5559709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 9374129 - 9374052
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    ||||||||| |  |||| |||||||||||||  |||||||  | ||||||||||| ||||||||||  ||||||||||    
T  9374129 ttaatattaaacattttgagcaataaattaaaacaatttccaatacataatttctgttaatgaaatttttaacatgtg 9374052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 11941495 - 11941532
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagcatta 158  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  11941495 atgttaacttgtgcctttagggcacatgttaaggatta 11941532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 12972687 - 12972724
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  12972687 gtcatgctaacttgtgctcttagggcacatgttaagca 12972724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 32656345 - 32656268
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    ||||||||| || |||||| |||||||||||| ||| ||   | |||| |||||||||| |||||| |||||||||||    
T  32656345 ttaatattaaatattttaatcaataaattaacacaagtttcaatacatgatttctattagtgaaattcttaacatgtg 32656268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 33830307 - 33830368
Alignment:
Q  211 ttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacat 272  Q
    |||| |||||||||||||| |||||||  | ||||||||||||||| | |||| ||||||||    
T  33830307 ttttgagcaataaattaacacaatttccaatacataatttctattagtaaaattcttaacat 33830368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 10399557 - 10399525
Alignment:
Q  147 tgttaagcattaaattcttgccactaatggtaa 179  Q
    ||||||||||||||||||||||||| |||||||    
T  10399557 tgttaagcattaaattcttgccactgatggtaa 10399525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 14776451 - 14776411
Alignment:
Q  119 tcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||||||||||||| ||||||| |||||||||| ||||||    
T  14776451 tcatgttaacttgtgtccttaggacacatgttaaacattaa 14776411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 25083885 - 25083853
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||| ||||||||    
T  25083885 atgttaacttgtgcccttagggcatatgttaag 25083853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 30354090 - 30354058
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||| |||||||||||||||||||    
T  30354090 atgttaacttgtgtccttagggcacatgttaag 30354058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 35310196 - 35310228
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||| ||||    
T  35310196 atgttaacttgtgcccttagggcacatgataag 35310228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 36528514 - 36528478
Alignment:
Q  119 tcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  36528514 tcatgttaacttgtgtccttagggtacatgttaagca 36528478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 41465382 - 41465422
Alignment:
Q  119 tcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||||||||||||| |||||||||| ||||||| ||||||    
T  41465382 tcatgttaacttgtgtccttagggcagatgttaatcattaa 41465422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 45075741 - 45075653
Alignment:
Q  211 ttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattt 299  Q
    ||||||||||||||||||| ||||||   | ||||||||| ||||| ||||||  |||||||||  | || ||  ||||||||||||||    
T  45075741 ttttaagcaataaattaacacaattttcaatacataatttatattagtgaaatttttaacatgtatcctaaagacacaaattaacattt 45075653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 124 - 275
Target Start/End: Original strand, 3344865 - 3345015
Alignment:
Q  124 ttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaataa 223  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||| |||||       ||||||||||||||||||||||||||    
T  3344865 ttaacttgtgcccttagagcacatgttaaacattaaatttttgccactaatggtaagtatt-aattgaaataaattaatattagattttttaagcaataa 3344963  T
Q  224 attaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  3344964 attaacgcaatttctaaaacataatttctattaatgaaatccttaacatgtg 3345015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 113 - 247
Target Start/End: Complemental strand, 28085353 - 28085220
Alignment:
Q  113 aatgagtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagatttt 212  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||| |||||       ||||||||| |||||    
T  28085353 aatgggtcatgttaacttgtgctcttagggcacatgttaagcattaaatttttgccattaatggtaaatatt-aattgaaaaaaattaatattaaatttt 28085255  T
Q  213 ttaagcaataaattaacgcaatttctgagacataa 247  Q
    |||||||||||||||||||||||||||||||||||    
T  28085254 ttaagcaataaattaacgcaatttctgagacataa 28085220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 118 - 274
Target Start/End: Original strand, 42655898 - 42656053
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    |||||||||||||||||||||| | |||||||||| ||||||||||||| |||||||||||| |||| |||||       ||||||||||||||||| ||    
T  42655898 gtcatgttaacttgtgcccttaagacacatgttaaacattaaattcttgacactaatggtaagtatt-aattgaaaaaaattaatattagattttttgag 42655996  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgt 274  Q
    ||||||||||| |||||||  ||||||||||||||| || | |||||||||||||||    
T  42655997 caataaattaatgcaattttcgagacataatttctactagtaaaatccttaacatgt 42656053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 118 - 254
Target Start/End: Original strand, 25037238 - 25037373
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| | ||||||||       ||||||||||||||||| ||    
T  25037238 gtcatgttaacttgtgctcttaggacacatgttaaacattaaattcttgccactaatggtaagt-tttaattgaaaaaaattaatattagattttttgag 25037336  T
Q  218 caataaattaacgcaatttctgagacataatttctat 254  Q
    |||||||||||||||||||  || | |||||||||||    
T  25037337 caataaattaacgcaattttcgaaatataatttctat 25037373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 118 - 275
Target Start/End: Complemental strand, 32135986 - 32135831
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    |||||||||||||||| | |||||| ||||||||| ||||||||||||| ||||||||  ||||||| |||||       ||||||||||||||||| ||    
T  32135986 gtcatgttaacttgtgtctttagggtacatgttaaacattaaattcttgtcactaatgaaaaatatt-aattgaaaaaa-ttaatattagattttttgag 32135889  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    |||||||||| ||||||||  |||||||||||||||||| || |||||||||||||||    
T  32135888 caataaattatcgcaatttacgagacataatttctattagtggaatccttaacatgtg 32135831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 13789602 - 13789731
Alignment:
Q  113 aatgagtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagatttt 212  Q
    |||||||||||||||||||||||||||||||     ||||||||| |||||||||||| |||| ||| |||| |||||       ||||||||| ||||     
T  13789602 aatgagtcatgttaacttgtgcccttagggc-----ttaagcatttaattcttgccacaaatgataagtatt-aattgaaaaaatttaatattaaattta 13789695  T
Q  213 ttaagcaataaattaacgcaatttctgagacataat 248  Q
    || |||||||||||||| |||||||||| |||||||    
T  13789696 ttgagcaataaattaacacaatttctgatacataat 13789731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 2903451 - 2903374
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    ||||||||||| ||||| ||||||||||||||  |||||| |||||||||||||||||| |  ||| |||||||||||    
T  2903451 ttaatattagaatttttgagcaataaattaacataatttccgagacataatttctattagtagaattcttaacatgtg 2903374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 29429774 - 29429737
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29429774 gtcatgttaacttgtgcccttagggcacatgttaagca 29429737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 263
Target Start/End: Complemental strand, 39796097 - 39796032
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaat 263  Q
    ||||||||| ||||||| |||||||||||||||||||||  || ||||||||| ||||| ||||||    
T  39796097 ttaatattaaatttttttagcaataaattaacgcaattttcgatacataatttgtattagtgaaat 39796032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 10333883 - 10333782
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacat 297  Q
    ||||||||| ||||||| ||||||||||||| ||| |||   ||||||||||| ||||| |  ||||||||| ||||| | ||  || ||||||||||||    
T  10333883 ttaatattaaattttttgagcaataaattaatgcatttttcaagacataatttttattagttgaatccttaatatgtgtcttaagggcacaaattaacat 10333784  T
Q  298 tt 299  Q
    ||    
T  10333783 tt 10333782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 16285911 - 16285988
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    ||||||||| || || | |||||||||||||| ||||||   |  ||||||||||||||||||||| |||||||||||    
T  16285911 ttaatattaaatattcttagcaataaattaacacaattttcaatgcataatttctattaatgaaattcttaacatgtg 16285988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 28735266 - 28735301
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||| ||||||    
T  28735266 gtcatgttaacttgtgcccttagggcacaagttaag 28735301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 12289168 - 12289131
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  12289168 gtcatattaacttgtgccctaagggcacatgttaagca 12289131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 13789929 - 13789897
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||| |||||||||||||||||||    
T  13789929 atgttaacttgtgtccttagggcacatgttaag 13789897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 21369215 - 21369139
Alignment:
Q  198 ttaatattagattttttaagc-aataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatg 273  Q
    ||||||||| || |||||||| ||||||||||| ||||||   | |||| || ||||||| ||||||||||||||||    
T  21369215 ttaatattaaatattttaagctaataaattaacacaattttcaatacatgatatctattagtgaaatccttaacatg 21369139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 118 - 299
Target Start/End: Complemental strand, 154367 - 154187
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    |||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| |||| |||||       ||||||||||||||||| ||    
T  154367 gtcatgttaacttgtgcccttaagacacatgttaaacattaaattcttgccactaatggtaagtatt-aattgaaaaaaattaatattagatttttttag 154269  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattt 299  Q
    |||||||||||||||||||||||  |||||||||||||| || ||||||||||||||| | || |||  |||||||||||||    
T  154268 caataaattaacgcaatttctgaagcataatttctattagtggaatccttaacatgtgccctaaaggcgcaaattaacattt 154187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 9464697 - 9464649
Alignment:
Q  136 cttagggcacatgttaagcattaaattcttgccactaatggtaaatatt 184  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  9464697 cttagggcacatgttaagcattaaattattgccactaatggtaagtatt 9464649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 7269671 - 7269737
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatt 184  Q
    ||||| |||||||||||| |||||||||||||||| ||||||||||||| || |||| |||| ||||    
T  7269671 gtcatattaacttgtgcctttagggcacatgttaaacattaaattcttgtcagtaatagtaagtatt 7269737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 33972586 - 33972647
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaa 179  Q
    ||||||||||||||||| ||||| |||||||||||||||||| ||| | ||| |||||||||    
T  33972586 gtcatgttaacttgtgctcttagagcacatgttaagcattaatttcattccattaatggtaa 33972647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 11109056 - 11109094
Alignment:
Q  114 atgagtcatgttaacttgtgcccttagggcacatgttaa 152  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  11109056 atgagtcatgttaacttgtgccctaaggacacatgttaa 11109094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 13243903 - 13243874
Alignment:
Q  124 ttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||||    
T  13243903 ttaacttgtgcccttagggcacatgttaag 13243874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 153
Target Start/End: Original strand, 3159579 - 3159607
Alignment:
Q  125 taacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||    
T  3159579 taacttgtgcccttagggcacatgttaag 3159607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 12141677 - 12141757
Alignment:
Q  108 taataaatgagtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaat 188  Q
    ||||||| | |||||||||||||||||  ||| | |||||||||| |||||| ||| | ||| ||||| |||| |||||||    
T  12141677 taataaaagggtcatgttaacttgtgcatttaagacacatgttaaacattaatttcattccattaatgataaaaatttaat 12141757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 138 - 272
Target Start/End: Complemental strand, 51672874 - 51672741
Alignment:
Q  138 tagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaataaattaacgcaatttc 237  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||       ||||||||||||||||| ||||||||||||||||||||||    
T  51672874 tagggcacatgttaagcattaaattcttgccactaatggtaagtatt-aattgaaaaaaattaatattagattttttgagcaataaattaacgcaatttc 51672776  T
Q  238 tgagacataatttctattaatgaaatccttaacat 272  Q
     |||||||||||||||||| || ||||||||||||    
T  51672775 cgagacataatttctattagtggaatccttaacat 51672741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 13132099 - 13132255
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| ||| |||| |||||       |||||||||||||||||  |    
T  13132099 gtcatgttaacttgtgcccttagggcacattttaagcattaaattattaccactaatgataagtatt-aattgaaaaaaattaatattagattttttggg 13132197  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    |||||||||||||||||||| || ||||||||||||||| || |||||||||||||||    
T  13132198 caataaattaacgcaatttccgaaacataatttctattagtggaatccttaacatgtg 13132255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 118 - 272
Target Start/End: Original strand, 7648667 - 7648820
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    |||||||||||||||| | ||||  ||||||||||||||||| || ||||||||||| |||| |||| |||||       ||||| |||||||||||||     
T  7648667 gtcatgttaacttgtgtctttagatcacatgttaagcattaactttttgccactaatagtaagtatt-aattgaaaaaaattaattttagattttttaaa 7648765  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacat 272  Q
    ||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||    
T  7648766 caataaattaacgcaatttctgaaacataatttatattagtggaatccttaacat 7648820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 118 - 274
Target Start/End: Complemental strand, 27211483 - 27211327
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaa-ttcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||| |||| ||       ||||||||| | |||||||    
T  27211483 gtcatgttaacttgtgcccttagggcacatgttaagcattaaatttcttgccacgaatgataaata-ttaaatgataaaaattaatattaaaatttttaa 27211385  T
Q  217 gcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgt 274  Q
     ||||||||||||  |||||  || ||||||||||||||| || |||| | |||||||    
T  27211384 acaataaattaacataattttcgatacataatttctattagtggaatcttgaacatgt 27211327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 145 - 272
Target Start/End: Complemental strand, 2614953 - 2614827
Alignment:
Q  145 catgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaataaattaacgcaatttctgagaca 244  Q
    |||||||| ||||||||||||||||||||||||||||||| | |||       ||||||||| ||||||| || |||||||||||||||||||  | |||    
T  2614953 catgttaaacattaaattcttgccactaatggtaaatatt-atttgaaaaaaattaatattaaattttttgagaaataaattaacgcaatttcaaaaaca 2614855  T
Q  245 taatttctattaatgaaatccttaacat 272  Q
    |||||| |||||||| ||||||||||||    
T  2614854 taatttttattaatggaatccttaacat 2614827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 52141471 - 52141541
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaat 188  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||| ||||||||    
T  52141471 gtcatgttaacttgtgcccttagggcatatgttaagcattaatttcattccactaatggtaagtatttaat 52141541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 272
Target Start/End: Original strand, 3491408 - 3491560
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||| | ||| |||||||||  |||||||         ||||||||| |  |||| ||    
T  3491408 gtcatgttaacttgtgcccttagggcacatgttaaacattaatttcattccattaatggtaagaatttaat--gaaaaaattaatattaaaaattttgag 3491505  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacat 272  Q
    |||||||||| | |||||||  | ||||||||||||||| || ||| ||||||||    
T  3491506 caataaattatcacaatttccaatacataatttctattagtggaattcttaacat 3491560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 305
Target Start/End: Original strand, 8550380 - 8550473
Alignment:
Q  212 tttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttcctta 305  Q
    |||||||||||||||||| |||||||  | ||||||||||||||| || ||| |||||||| || ||||| || |||| ||||||||| |||||    
T  8550380 tttaagcaataaattaacacaatttccaatacataatttctattagtggaattcttaacatatgtcatacgggcacaagttaacatttccctta 8550473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 48022890 - 48022823
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaat 188  Q
    |||||||||||||||||||||||||||||||| |||||| ||| | ||| |||||||||  |||||||    
T  48022890 atgttaacttgtgcccttagggcacatgttaaacattaatttcattccattaatggtaagaatttaat 48022823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 48217530 - 48217597
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaa-ttcttgccactaatggtaaatatt 184  Q
    ||||||||| |||||||||||||||||| |||||||||||||| || ||| || ||||||||||||||    
T  48217530 gtcatgttatcttgtgcccttagggcacgtgttaagcattaaattttttgtcattaatggtaaatatt 48217597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 21276535 - 21276605
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaat 188  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||| | | | |||||||||  |||||||    
T  21276535 gtcatgttaacttgtgcccttaggacacatgttaagcattaatttcattctattaatggtaagaatttaat 21276605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 298201 - 298233
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||||||    
T  298201 atgttaacttgtgcccttagggcacatgttaag 298233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 5198873 - 5198785
Alignment:
Q  219 aataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttccttaat 307  Q
    ||||||||||| |||||||  | ||||||||||||||| |  ||| ||||||||||| || |  ||||||| |||||||||||| ||||    
T  5198873 aataaattaacacaatttccaatacataatttctattagtagaattcttaacatgtgtcacaagggtacaagttaacattttccataat 5198785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 7473292 - 7473228
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaa 262  Q
    ||||||||| ||||||| || |||||||||||| ||||| | | | |||||||||||||||||||    
T  7473292 ttaatattatattttttgagaaataaattaacgtaatttttaaaagataatttctattaatgaaa 7473228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 32544774 - 32544806
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||||||    
T  32544774 atgttaacttgtgcccttagggcacatgttaag 32544806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 12521473 - 12521330
Alignment:
Q  112 aaatgagtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattt 211  Q
    ||||| ||| |||||||||||||||| ||| |||||||||| |||||| ||| | | | |||||||||  ||||||||        ||||||||| |  |    
T  12521473 aaatgggtcgtgttaacttgtgccctaaggacacatgttaaacattaatttcattctattaatggtaagaatttaatt-aaaaaaattaatattaaacat 12521375  T
Q  212 tttaagcaataaattaacgcaatttctgagacataatttctatta 256  Q
    ||| ||||||||||||||  ||||| | | |||||||||||||||    
T  12521374 tttgagcaataaattaacataatttttaatacataatttctatta 12521330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 153
Target Start/End: Original strand, 18436296 - 18436327
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||||||    
T  18436296 tgttaacttgtgcccttagggcacatgttaag 18436327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 153
Target Start/End: Original strand, 32441614 - 32441645
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||||||    
T  32441614 tgttaacttgtgcccttagggcacatgttaag 32441645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 298380 - 298310
Alignment:
Q  119 tcatgttaacttgtgcccttagggc-acatgttaagcattaaattcttgccactaatggtaaatatttaat 188  Q
    ||||||||||||||||||||| ||| |||||||||||||||| ||| | ||| |||| ||||  |||||||    
T  298380 tcatgttaacttgtgcccttaaggcaacatgttaagcattaatttcattccattaatagtaagaatttaat 298310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 5198984 - 5198934
Alignment:
Q  109 aataaatgagtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    |||| ||| ||||| ||||||||||| ||||||||||||||||| ||||||    
T  5198984 aatatatgggtcatattaacttgtgctcttagggcacatgttaaacattaa 5198934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 943265 - 943196
Alignment:
Q  119 tcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaat 188  Q
    ||||||||||||||||||| |||| ||||||||| |||||| ||| | ||| |||| ||||  |||||||    
T  943265 tcatgttaacttgtgccctcagggtacatgttaaacattaatttcattccattaatagtaagaatttaat 943196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 49872265 - 49872192
Alignment:
Q  199 taatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacat 272  Q
    |||||||| ||||||| |||||||||||||| ||||||  || |||  |||| ||||| || ||||||||||||    
T  49872265 taatattaaattttttgagcaataaattaacacaattttcgatacaacatttttattagtggaatccttaacat 49872192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 3491585 - 3491553
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||| ||||||||    
T  3491585 atgttaacttgtgcccttagggcaaatgttaag 3491553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 15881269 - 15881241
Alignment:
Q  125 taacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||    
T  15881269 taacttgtgcccttagggcacatgttaag 15881241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 32441778 - 32441746
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||| |||||||||||||    
T  32441778 atgttaacttgtgcccttatggcacatgttaag 32441746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 39412441 - 39412473
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||| ||||||||||||||||||    
T  39412441 atgttaacttgtgctcttagggcacatgttaag 39412473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 43949235 - 43949207
Alignment:
Q  125 taacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||    
T  43949235 taacttgtgcccttagggcacatgttaag 43949207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 153
Target Start/End: Original strand, 51295704 - 51295732
Alignment:
Q  125 taacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||    
T  51295704 taacttgtgcccttagggcacatgttaag 51295732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 118 - 304
Target Start/End: Original strand, 17268771 - 17268955
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    |||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| || |||| |||||       |||||||||||||||||||     
T  17268771 gtcatgttaacttgtgcctttagggcacatgttaagcattcaattattgccactaatggcaagtatt-aattgaaaaaa-ttaatattagattttttaaa 17268868  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttcctt 304  Q
    |||||||||||| |||| || ||||||||||||||||||||  ||| ||||||||||| | || |||| ||| ||||||||| ||||    
T  17268869 caataaattaacacaatctccgagacataatttctattaatagaattcttaacatgtgccctaaaggttcaagttaacatttccctt 17268955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 121 - 275
Target Start/End: Original strand, 52278969 - 52279123
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattg-nnnnnnnttaatattagattttttaagca 219  Q
    |||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||| || |||||||         || ||||||||||||| ||||    
T  52278969 atgttaacttatgcccttatggcacatgttaagcattaaatttttgccactaatggtaagta-ttaattgaaaaaaaaatagtattagattttttgagca 52279067  T
Q  220 ataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    |||||||||| |||||||| | ||||||||||||||| ||||||| ||||| ||||    
T  52279068 ataaattaacacaatttcttaaacataatttctattagtgaaatcattaacttgtg 52279123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 118 - 299
Target Start/End: Original strand, 41460531 - 41460711
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaa-ttcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaa 216  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||||||| |||| ||       ||||||||| |||||||||    
T  41460531 gtcatgttaacttgtgcccttagagcacatgttaaacattaaatttcttgccgctaatggtaaata-ttaaatgaaaaaaattaatattaaattttttaa 41460629  T
Q  217 gcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattt 299  Q
    | ||||||||||| |||||| | | |||| |||||||||| || ||| ||||||||||| | || ||| |||| |||||||||    
T  41460630 gtaataaattaacacaatttttaatacat-atttctattactggaattcttaacatgtgtcctaaaggcacaagttaacattt 41460711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 26889935 - 26890008
Alignment:
Q  202 tattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    ||||||||||||| |||||| ||||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  26889935 tattagattttttgagcaattaattaacgcaattttcgagacataatttctattagtgaaatccttaacatgtg 26890008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 146 - 257
Target Start/End: Original strand, 11348008 - 11348119
Alignment:
Q  146 atgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaataaattaacgcaatttctga-gaca 244  Q
    ||||||| |||||||||||||||| ||| ||||| |||| |||||       |||||||||||||||||||||||||||||||||||||||| ||  |||    
T  11348008 atgttaaacattaaattcttgccattaacggtaagtatt-aattgaaaaaaattaatattagattttttaagcaataaattaacgcaatttccgataaca 11348106  T
Q  245 taatttctattaa 257  Q
    |||||||||||||    
T  11348107 taatttctattaa 11348119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 198 - 304
Target Start/End: Complemental strand, 51675974 - 51675869
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacat 297  Q
    ||||||||| ||||||||| |||||||||||||||||||| |||||||||| ||||||| | |||||||||| || || |||| ||| |||| |||||||    
T  51675974 ttaatattaaattttttaa-caataaattaacgcaatttccgagacataatatctattagtaaaatccttaaaatatgtcataaaggcacaagttaacat 51675876  T
Q  298 tttcctt 304  Q
    || ||||    
T  51675875 ttccctt 51675869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 304
Target Start/End: Original strand, 30537920 - 30538106
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    ||||||||||||||| ||||||||||||||||||| |||||  ||| | ||| |||||||||  ||||||| |       | ||||||| |  |||| ||    
T  30537920 gtcatgttaacttgttcccttagggcacatgttaaacattagtttcattccaataatggtaagaatttaatggaaaaaaatgaatattaaacattttgag 30538019  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttcctt 304  Q
    |||||||||||| ||||||   | |||||||||||||||||| ||| ||||||||||    ||  ||||||||||||||||| ||||    
T  30538020 caataaattaacacaattttcaatacataatttctattaatggaattcttaacatgtattctaagggtacaaattaacatttccctt 30538106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 306
Target Start/End: Original strand, 22409324 - 22409511
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    ||||||||||||||||||||||  ||||||||||| |||||| ||| | ||| |||||||||  |||||| ||       ||||||||| |  |||||||    
T  22409324 gtcatgttaacttgtgcccttaatgcacatgttaaacattaatttcattccattaatggtaagaatttaa-tgaaaaaaattaatattaaacattttaag 22409422  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttccttaa 306  Q
    |||||||||||| |||||||  | |||| |||||||||| |  ||| ||||||||||| | ||  || |||| ||||||||| ||||||    
T  22409423 caataaattaacacaatttccaatacatgatttctattagtagaattcttaacatgtgccctaagggcacaagttaacatttcccttaa 22409511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 198 - 304
Target Start/End: Original strand, 32055078 - 32055184
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacat 297  Q
    ||||||||| ||||||||| |||||||||||| ||||||  || |||||||||||||||||| |||| ||||||||||   ||  || |||| |||||||    
T  32055078 ttaatattatattttttaaacaataaattaacacaattttcgatacataatttctattaatggaatctttaacatgtgctttaagggcacaagttaacat 32055177  T
Q  298 tttcctt 304  Q
    |||||||    
T  32055178 tttcctt 32055184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 275
Target Start/End: Complemental strand, 32318690 - 32318539
Alignment:
Q  123 gttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaata 222  Q
    |||||||||||||||||||||||||||||||||||||  || |  || || | || |||| || ||||       ||||||||| |  |||| | |||||    
T  32318690 gttaacttgtgcccttagggcacatgttaagcattaatgtcatttcattagt-gttaataatttattgaaaaaaattaatattaaacattttgaacaata 32318592  T
Q  223 aattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    ||||||| ||||||   | |||||||||||||||||||||| |||||||||||    
T  32318591 aattaacacaattttcaatacataatttctattaatgaaattcttaacatgtg 32318539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 38794176 - 38794106
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaat 188  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| | ||| |||| ||||  |||||||    
T  38794176 gtcatgttaacttgtgcccttagggcccatgttaagcattaatttcattccattaatagtaagaatttaat 38794106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 20574851 - 20574892
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  20574851 gtcatgttaacttgtgcccttagggcacatgttaaacattaa 20574892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 26889578 - 26889619
Alignment:
Q  138 tagggcacatgttaagcattaaattcttgccactaatggtaa 179  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  26889578 tagggcacatgttaagcattaaattcttgctactaatggtaa 26889619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 28675678 - 28675715
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28675678 gtcatgttaacttgtgcccttagggcacatgttaagca 28675715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 50297630 - 50297667
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50297630 gtcatgttaacttgtgcccttagggcacatgttaagca 50297667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 274
Target Start/End: Original strand, 53039377 - 53039531
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaat-tgnnnnnnnttaatattagattttttaagca 219  Q
    ||||||||||||| |||||||||| |||||||||||||| ||| |  || |||||||||| |||||||          | ||||||| | |||||| |||    
T  53039377 atgttaacttgtgtccttagggcatatgttaagcattaatttcatttcattaatggtaaaaatttaataaaaaaaaaataaatattaaactttttatgca 53039476  T
Q  220 ataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgt 274  Q
    |||||||||| |||||    | ||||||||||||||| |||||| ||||||||||    
T  53039477 ataaattaacacaattatcaatacataatttctattagtgaaattcttaacatgt 53039531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 26533186 - 26533265
Alignment:
Q  220 ataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattt 299  Q
    |||||||||| ||||||| || ||||||||||||||| || ||| ||||||||||| ||||  || |||| |||||||||    
T  26533186 ataaattaacacaatttccgatacataatttctattagtggaattcttaacatgtgccataagggcacaagttaacattt 26533265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 4960348 - 4960410
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaa 180  Q
    ||||| ||||||| |||||||||| ||||||||||||||||| ||| | ||| ||||||||||    
T  4960348 gtcatattaacttatgcccttaggacacatgttaagcattaatttcattccattaatggtaaa 4960410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 54997683 - 54997732
Alignment:
Q  106 attaataaatgagtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    |||||| | ||||||||||||||||||| | |||||||||||||||||||    
T  54997683 attaattattgagtcatgttaacttgtgtcattagggcacatgttaagca 54997732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 275
Target Start/End: Complemental strand, 10109399 - 10109243
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    |||||||||||||||| | |||||||||||||||| |||||  ||| |  || |||||||||| |||| | ||       ||||||||| |  |||| ||    
T  10109399 gtcatgttaacttgtgtctttagggcacatgttaaacattattttcatttcaataatggtaaaaatttga-tgaaaaaagttaatattaaacattttgag 10109301  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    |||||||||||| ||||||   | ||||||||||||||| || ||| ||||| |||||    
T  10109300 caataaattaacacaattttcaatacataatttctattagtggaattcttaatatgtg 10109243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 22409502 - 22409470
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||||||    
T  22409502 atgttaacttgtgcccttagggcacatgttaag 22409470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 39414559 - 39414519
Alignment:
Q  113 aatgagtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  39414559 aatgggtcatgttaacttgtgcccttagggcacaagttaag 39414519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 22019557 - 22019522
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||| |||||||||||||||    
T  22019557 gtcatgttaacttgtgccctaagggcacatgttaag 22019522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 30617530 - 30617577
Alignment:
Q  106 attaataaatgagtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||| ||||| |||||| |||||||||||||||||||||| ||||||    
T  30617530 attaaaaaatgggtcatgctaacttgtgcccttagggcacaagttaag 30617577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 41069072 - 41069147
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatg 273  Q
    ||||||||| || ||||||||||||||||||| ||||||   | ||||||||||||||| | |||| ||| |||||    
T  41069072 ttaatattaaatattttaagcaataaattaacacaattttcaaaacataatttctattagtaaaattctttacatg 41069147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 153
Target Start/End: Original strand, 45219923 - 45219954
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||||||    
T  45219923 tgttaacttgtgcccttagggcacatgttaag 45219954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 153
Target Start/End: Complemental strand, 47388620 - 47388589
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||||||    
T  47388620 tgttaacttgtgcccttagggcacatgttaag 47388589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 153
Target Start/End: Complemental strand, 53133625 - 53133594
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||||||    
T  53133625 tgttaacttgtgcccttagggcacatgttaag 53133594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 30255184 - 30255222
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  30255184 atgttaacttgtgcccttagggcacattttaaacattaa 30255222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 2554065 - 2554102
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  2554065 gtcatgctaacttgtgcccttcgggcacatgttaagca 2554102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 42898963 - 42899004
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||| |||||||||| |||||||||||||||||| ||||||    
T  42898963 gtcatcttaacttgtgtccttagggcacatgttaaacattaa 42899004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 564107 - 564139
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||| ||||||||||||||||||||    
T  564107 atgttaacttgtacccttagggcacatgttaag 564139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 4960531 - 4960499
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||| |||||||||||||||||||    
T  4960531 atgttaacttgtgtccttagggcacatgttaag 4960499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 25435785 - 25435753
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||| |||||||||||||||||||    
T  25435785 atgttaacttgtgaccttagggcacatgttaag 25435753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 26533263 - 26533231
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||| |||||||||||||    
T  26533263 atgttaacttgtgcccttatggcacatgttaag 26533231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 26890030 - 26889998
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||| |||||||||||||||||||    
T  26890030 atgttaacttgtgtccttagggcacatgttaag 26889998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 150
Target Start/End: Complemental strand, 34291392 - 34291364
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgtt 150  Q
    |||||||||||||||||||||||||||||    
T  34291392 tgttaacttgtgcccttagggcacatgtt 34291364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1157 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold1157
Description:

Target: scaffold1157; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 1860 - 2016
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    |||||||||||| ||| ||||| | |||||||||||||||| |||||||||||||||||||| |||| |||||        |||||||||||||||||||    
T  1860 gtcatgttaactcgtgtccttaagccacatgttaagcattacattcttgccactaatggtaattatt-aattgaaaaaaactaatattagattttttaag 1958  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    |||||||||||| ||||||  |||||||||||||||||| || |||| ||||||||||    
T  1959 caataaattaacacaattttcgagacataatttctattagtggaatcattaacatgtg 2016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1157; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 2038 - 2007
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaa 152  Q
    ||||||||||||||||||||||||||||||||    
T  2038 atgttaacttgtgcccttagggcacatgttaa 2007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 275
Target Start/End: Complemental strand, 38773690 - 38773534
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||       |||||||||||| |||| |     
T  38773690 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttaccactaatggtaagtatt-aattgaaaataattaatattagatattttgaa 38773592  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    || ||||||||||||||||   ||||| |||||| |||| |||||| ||||| |||||    
T  38773591 cattaaattaacgcaattttcaagacaaaatttccattagtgaaattcttaatatgtg 38773534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 134 - 299
Target Start/End: Original strand, 21290141 - 21290305
Alignment:
Q  134 cccttagggcacatgttaagcattaaatt-cttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaataaattaacgca 232  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||   |||| ||       ||||||||| ||||||||||||||||||||||  |    
T  21290141 cccttagggcacatgttaagcattaaatttcttgccactaatggtaaaa--ttaaatgaaaaaaattaatattatattttttaagcaataaattaacata 21290238  T
Q  233 atttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattt 299  Q
    ||||| || |||||||||||||||||| |||  |||||||||| ||||  || ||||||||||||||    
T  21290239 atttccgatacataatttctattaatggaatatttaacatgtgccataagggcacaaattaacattt 21290305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 37238761 - 37238917
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||  |||||| ||       | ||||||| |  ||||||     
T  37238761 gtcatgttaacttgtgcccttagggcacatgttaagcattaatttcattccattaatggtaataatttaa-tgaaaaatatcaatattaaacattttaaa 37238859  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    |||||||||||| |||||||  | | |||||||||||||||| ||| |||||||||||    
T  37238860 caataaattaacacaatttccaaaaaataatttctattaatggaattcttaacatgtg 37238917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 118 - 256
Target Start/End: Complemental strand, 25556593 - 25556455
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattg-nnnnnnnttaatattagattttttaa 216  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||||| ||| || |||||||        ||||||||||||||||| |    
T  25556593 gtcatgctaacttgtgcctttagggcacattttaagcattaaattcttgtcactaatgataagta-ttaattgaaaaaaaattaatattagattttttga 25556495  T
Q  217 gcaataaattaacgcaatttctgagacataatttctatta 256  Q
    ||| |||| || ||||||||| || ||||||||| |||||    
T  25556494 gcagtaaactatcgcaatttccgatacataatttttatta 25556455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 256
Target Start/End: Original strand, 12736089 - 12736222
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaat 221  Q
    ||||||||| |||||||||  |||||||||||| ||||||| |||||||| |||||||  | |||||||       ||||||||||||||||| |  | |    
T  12736089 tgttaacttatgcccttagaacacatgttaagcgttaaatttttgccactgatggtaagca-ttaattgaaaaaaattaatattagatttttttaaaagt 12736187  T
Q  222 aaattaacgcaatttctgagacataatttctatta 256  Q
    |||||||||||||||  |||||||||||| |||||    
T  12736188 aaattaacgcaattttcgagacataatttttatta 12736222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 275
Target Start/End: Complemental strand, 28946000 - 28945845
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    |||||||||||||||||||||| |||| ||||||| |||||| ||| | ||| |||||||||| |||||||         ||||||||| |  |||||||    
T  28946000 gtcatgttaacttgtgcccttaaggcatatgttaaacattaatttcattccattaatggtaaaaatttaat--gaaaaaattaatattaaacattttaag 28945903  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    |||||||||||| |||||||  | |||| |||| ||||| || ||| |||||||||||    
T  28945902 caataaattaacacaatttccaatacatgatttttattagtggaattcttaacatgtg 28945845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 51980687 - 51980728
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  51980687 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 51980728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 13863584 - 13863625
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  13863584 gtcatgttaacttgtgcccttaggacacatgttaagcattaa 13863625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 30352883 - 30352946
Alignment:
Q  122 tgttaacttgtgccc-ttagggcacatgttaagcattaaattcttgccactaatggtaaatatt 184  Q
    |||||| |||||||| ||||  ||||||||||||||||||||||||| ||||||||||| ||||    
T  30352883 tgttaatttgtgccccttagaacacatgttaagcattaaattcttgctactaatggtaagtatt 30352946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 972591 - 972521
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaat 188  Q
    |||||||||||||||||  ||||||||||||||||||||||| ||| |  || |||||||||  |||||||    
T  972591 gtcatgttaacttgtgcttttagggcacatgttaagcattaatttcatttcattaatggtaagaatttaat 972521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 28963357 - 28963427
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaat 188  Q
    ||||||||||||||||  ||||||||||||||| |||||||| ||| | ||| |||||||||  |||||||    
T  28963357 gtcatgttaacttgtgttcttagggcacatgtttagcattaatttcattccattaatggtaagaatttaat 28963427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 43310633 - 43310592
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    |||||| ||||||||||||| |||||||||||||||||||||    
T  43310633 gtcatgctaacttgtgccctcagggcacatgttaagcattaa 43310592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 45054804 - 45054767
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    |||||||||||||||||||| |||||||||||||||||    
T  45054804 gtcatgttaacttgtgccctaagggcacatgttaagca 45054767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 12568781 - 12568749
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||||||    
T  12568781 atgttaacttgtgcccttagggcacatgttaag 12568749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 13545245 - 13545213
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||||||    
T  13545245 atgttaacttgtgcccttagggcacatgttaag 13545213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 24355450 - 24355486
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagc 154  Q
    |||||||||||||||||||||| ||||||||||||||    
T  24355450 gtcatgttaacttgtgcccttaaggcacatgttaagc 24355486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 28451890 - 28451858
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||||||    
T  28451890 atgttaacttgtgcccttagggcacatgttaag 28451858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 30578754 - 30578786
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||||||    
T  30578754 atgttaacttgtgcccttagggcacatgttaag 30578786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 11042818 - 11042747
Alignment:
Q  202 tattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatg 273  Q
    ||||| ||||||| ||||||||||||||  ||||| ||| |||  |||||||||| || |||||||||||||    
T  11042818 tattaaattttttgagcaataaattaacataatttttgatacaatatttctattattggaatccttaacatg 11042747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 35982440 - 35982381
Alignment:
Q  116 gagtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatg 175  Q
    |||||||||||||||||||  ||| ||||||| ||||||||||| ||| | |||||||||    
T  35982440 gagtcatgttaacttgtgcatttacggcacatattaagcattaatttcattccactaatg 35982381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 50129210 - 50129175
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||| ||||||    
T  50129210 gtcatgttaacttgtgcccttagggcacaagttaag 50129175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 300
Target Start/End: Original strand, 50699805 - 50699892
Alignment:
Q  213 ttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacatttt 300  Q
    ||||||||||||||||| |||||||  | |||| |||||||||| || ||| ||||||||||| | ||  || | |||||||||||||    
T  50699805 ttaagcaataaattaacacaatttccaatacatgatttctattagtggaattcttaacatgtgccctaagggcataaattaacatttt 50699892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 37311805 - 37311771
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagca 155  Q
    |||||||||||||||||||| ||||||||||||||    
T  37311805 atgttaacttgtgcccttagagcacatgttaagca 37311771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 37387509 - 37387475
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaa 152  Q
    |||||||||||||||||||| ||||||||||||||    
T  37387509 gtcatgttaacttgtgccctaagggcacatgttaa 37387475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 44234502 - 44234448
Alignment:
Q  216 agcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaac 270  Q
    ||||||||||||||||||||| | ||| ||||||||||| | ||||||| |||||    
T  44234502 agcaataaattaacgcaatttttaagatataatttctatcagtgaaatcattaac 44234448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 32309034 - 32308997
Alignment:
Q  116 gagtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  32309034 gagtcatgttaacttgtgcctttagagcacatgttaag 32308997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 36923581 - 36923658
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    ||||||||| |  |||| |||||||||||||| |||||||  | ||||||||||||||| || ||| ||||| |||||    
T  36923581 ttaatattaaacattttgagcaataaattaacacaatttccaatacataatttctattagtggaattcttaatatgtg 36923658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 52915451 - 52915492
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||||||||||||||| |||| | |||||||||||||||||    
T  52915451 gtcatgttaacttgtgctcttatgacacatgttaagcattaa 52915492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 972413 - 972445
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||| |||||||||||||||||||    
T  972413 atgttaacttgtgtccttagggcacatgttaag 972445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 37238939 - 37238907
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||| |||||||||||||||    
T  37238939 atgttaacttgtgccctaagggcacatgttaag 37238907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 52378748 - 52378712
Alignment:
Q  123 gttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  52378748 gttaacttgtgcctttagggcacatgttaaacattaa 52378712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 119 - 306
Target Start/End: Original strand, 21388009 - 21388195
Alignment:
Q  119 tcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagc 218  Q
    ||||||||||||||| ||| | | |||||||||||||||||||||||| || |||||||||||||| |||||       ||||||||||| ||||| ||     
T  21388009 tcatgttaacttgtgtcctaatgacacatgttaagcattaaattcttgtcattaatggtaaatatt-aattgaaaaaaattaatattagaatttttgagt 21388107  T
Q  219 aataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttccttaa 306  Q
    |||||| |||| ||||||  ||||||||||||||| ||||| ||||||||| ||||| ||||  || |||| ||||||||| ||||||    
T  21388108 aataaagtaacacaattttcgagacataatttctactaatggaatccttaagatgtgtcataagggcacaagttaacatttcccttaa 21388195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 118 - 305
Target Start/End: Original strand, 38073567 - 38073753
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||| | ||| |||||||||  |||||| ||       |||||| || || |||| ||    
T  38073567 gtcatgttaacttgtgcccttagggcacatgttaaacattaatttcattccattaatggtaagaatttaa-tgaaataaattaatactaaatattttgag 38073665  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttcctta 305  Q
    |||||||||||| |||||||| | |||||||||||||||  ||||| ||||||||||| | ||  || |||| ||||||||| |||||    
T  38073666 caataaattaacacaatttctaatacataatttctattagagaaatgcttaacatgtgccctaagggcacaagttaacatttccctta 38073753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 121 - 301
Target Start/End: Complemental strand, 31418220 - 31418043
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaa 220  Q
    |||||||| |||| | |||||||||| ||||| ||||||||||||||||||  | |||| |||| |||||       ||||||||| |||||| || |||    
T  31418220 atgttaacgtgtgtctttagggcacaggttaaacattaaattcttgccactggtagtaagtatt-aattgaaaaaa-ttaatattaaatttttaaa-caa 31418124  T
Q  221 taaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttc 301  Q
    |||||||||||||||| |||||||||||||||||||||| |||| |||||||||| | ||  || |||| |||||||||||    
T  31418123 taaattaacgcaatttttgagacataatttctattaatggaatcattaacatgtgtcttaagggcacaagttaacattttc 31418043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 274
Target Start/End: Complemental strand, 45278800 - 45278724
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgt 274  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| || ||||||||| ||||    
T  45278800 ttaatattagattttttgagcaataaattaacgcaatttttgaaacataatttctattagtggaatccttaagatgt 45278724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 39854083 - 39854153
Alignment:
Q  120 catgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattg 190  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| | ||| |||||||||| |||||||||    
T  39854083 catgttaacttgtgcccttagggcatatgttaagcattaatttcattccattaatggtaaaaatttaattg 39854153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 275
Target Start/End: Complemental strand, 10679278 - 10679121
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaa-ttcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaa 216  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||| || ||||  ||| || |||||||       ||||||||  ||||||| |    
T  10679278 gtcatgttaacttgtgcccttagggcacatgttaaacattaaatttcttgtcattaataataagta-ttaattgaaaaaaattaatattgaattttttga 10679180  T
Q  217 gcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    ||||||||||||| ||||||  || |||  |||| ||||| || |||| ||||||||||    
T  10679179 gcaataaattaacacaattttcgatacaatatttttattattggaatctttaacatgtg 10679121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 11667162 - 11667121
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11667162 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 11667121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 20884451 - 20884492
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  20884451 gtcatgttaacttgtgcccttagggtacatgttaagcattaa 20884492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 38073745 - 38073709
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagcatt 157  Q
    |||||||||||||||||||||||||||||||||||||    
T  38073745 atgttaacttgtgcccttagggcacatgttaagcatt 38073709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 45278869 - 45278827
Alignment:
Q  119 tcatgttaacttgtgcccttagggcacatgttaagcattaaat 161  Q
    |||||||||||||||||| ||||||||||||||| ||||||||    
T  45278869 tcatgttaacttgtgcccctagggcacatgttaatcattaaat 45278827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 7907620 - 7907583
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    |||||||||||||||||||||| |||||||||||||||    
T  7907620 gtcatgttaacttgtgcccttaaggcacatgttaagca 7907583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 8073529 - 8073590
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaa 179  Q
    |||||| ||||||||||| || ||||||||||||||||||||  || | |||||||||||||    
T  8073529 gtcatgctaacttgtgcctttggggcacatgttaagcattaatgtcattccactaatggtaa 8073590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 38652632 - 38652673
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  38652632 gtcatgttaacttgtgcccttagggtacatgttaaacattaa 38652673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 45837976 - 45837939
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    |||||| |||||||||||||||||||||||||||||||    
T  45837976 gtcatgctaacttgtgcccttagggcacatgttaagca 45837939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 153
Target Start/End: Complemental strand, 17354516 - 17354485
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||||||    
T  17354516 tgttaacttgtgcccttagggcacatgttaag 17354485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 25119907 - 25119872
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||| |||||||||||||||    
T  25119907 gtcatgttaacttgtgccctaagggcacatgttaag 25119872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 153
Target Start/End: Original strand, 36827792 - 36827823
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||||||    
T  36827792 tgttaacttgtgcccttagggcacatgttaag 36827823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 42121490 - 42121447
Alignment:
Q  112 aaatgagtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||    
T  42121490 aaatgggtcatgttaacttatgccctaagggcacatgttaagca 42121447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 43131881 - 43131916
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||| ||||||    
T  43131881 gtcatgttaacttgtgcccttagggcacaagttaag 43131916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 153
Target Start/End: Original strand, 48633903 - 48633934
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||||||||    
T  48633903 tgttaacttgtgcccttagggcacatgttaag 48633934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 31009959 - 31009905
Alignment:
Q  105 tattaataaatgagtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    |||||| ||||| ||||||||||||||||||| || | |||||||||| ||||||    
T  31009959 tattaaaaaatgggtcatgttaacttgtgcccgtaagacacatgttaaacattaa 31009905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 39837394 - 39837428
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaa 152  Q
    ||||||||||||||||||||||||||| |||||||    
T  39837394 gtcatgttaacttgtgcccttagggcatatgttaa 39837428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 45513089 - 45513147
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaa 179  Q
    ||||||||||||||||||| | ||||||||||||| ||| ||| | ||| |||||||||    
T  45513089 atgttaacttgtgcccttaagacacatgttaagcactaatttcattccattaatggtaa 45513147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 21148569 - 21148528
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    |||||||||| ||||||||| |||||||||||||| ||||||    
T  21148569 gtcatgttaatttgtgccctaagggcacatgttaaacattaa 21148528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 48723227 - 48723264
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  48723227 gtcatgctaacttgtgcccttatggcacatgttaagca 48723264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 19370150 - 19370182
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||| |||||||||||||||||    
T  19370150 atgttaacttgtgcctttagggcacatgttaag 19370182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 32546871 - 32546839
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||||||||||| |||||    
T  32546871 atgttaacttgtgcccttagggcacatattaag 32546839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 32786963 - 32786923
Alignment:
Q  113 aatgagtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    |||| |||||| ||||||||||||| |||||||||||||||    
T  32786963 aatgggtcatgctaacttgtgccctaagggcacatgttaag 32786923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 41888966 - 41888934
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||| ||||    
T  41888966 atgttaacttgtgcccttagggcacatgataag 41888934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 122 - 299
Target Start/End: Complemental strand, 24991904 - 24991727
Alignment:
Q  122 tgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaat 221  Q
    |||||| || ||||||||||||||||||||| |||||||||||||||| |||| |||| |||| |||||       ||||||||| ||||||| | ||||    
T  24991904 tgttaaattatgcccttagggcacatgttaaacattaaattcttgccattaatagtaagtatt-aattgaaaaaaattaatattaaattttttgaacaat 24991806  T
Q  222 aaattaacgcaatttctgagacataatttctattaatgaaatc-cttaacatgtgacatacaggtacaaattaacattt 299  Q
    ||||||||||| |||| |||||||||||||||||| |  ||||  |||| ||||| |||| ||| ||||||||||||||    
T  24991805 aaattaacgcagtttccgagacataatttctattagtagaatcttttaatatgtgccataaaggcacaaattaacattt 24991727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 140 - 304
Target Start/End: Complemental strand, 17867600 - 17867437
Alignment:
Q  140 gggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaataaattaacgcaatttctg 239  Q
    ||||||| ||||||||||||||||||| || ||||||||| |||| |||||        |||||||| |||||||||| ||||||||||| ||||||| |    
T  17867600 gggcacaggttaagcattaaattcttgtcattaatggtaagtatt-aattgaaaaaaaataatattaaattttttaagtaataaattaacacaatttccg 17867502  T
Q  240 agacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttcctt 304  Q
    | |||||||||||||||||||||| ||||||||||| | ||  |  |||||||||||||| ||||    
T  17867501 atacataatttctattaatgaaattcttaacatgtgccttaaggacacaaattaacatttccctt 17867437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 2539931 - 2539835
Alignment:
Q  202 tattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattt 299  Q
    ||||||||||||| ||||||||||||| |||||||  |||||||||||||||||||| |||| ||||||||||| ||||  || |||| |||||||||    
T  2539931 tattagattttttgagcaataaattaatgcaattttcgagacataatttctattaataaaat-cttaacatgtgccataagggcacaagttaacattt 2539835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 275
Target Start/End: Complemental strand, 11258034 - 11257879
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||| | | | |||||||||  |||||||         ||||||||| |  |||||||    
T  11258034 gtcatgttaacttgtgcccttagggcacatgttaaacattattttcattcaaataatggtaagaatttaat--gaaaaaattaatattaaacattttaag 11257937  T
Q  218 caataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    |||||||||||| |||||| | | ||||||||||||||| || ||| |||||||||||    
T  11257936 caataaattaacacaatttataatacataatttctattagtggaattcttaacatgtg 11257879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 31451365 - 31451294
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaa 269  Q
    ||||||||||||||||| | ||||||||||||  ||||||  |||||||||||||||||||| |||||||||    
T  31451365 ttaatattagattttttgaacaataaattaacaaaatttccaagacataatttctattaatgcaatccttaa 31451294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 2540291 - 2540225
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatt 184  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||| || ||||||||| ||||    
T  2540291 gtcatgttaacttgtacccttagaacacatgttaagcattaaattcttgtcagtaatggtaagtatt 2540225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 274
Target Start/End: Complemental strand, 38730316 - 38730197
Alignment:
Q  154 cattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaagcaataaattaacgcaatttctgagacataatttcta 253  Q
    ||||||||||||| || ||||||||| |||| |||||       ||||||||| ||||||| | |||||||||||||||||||  || | ||||||||||    
T  38730316 cattaaattcttgtcattaatggtaagtatt-aattgaaaaaaattaatattaaattttttgaacaataaattaacgcaattttcgacatataatttcta 38730218  T
Q  254 ttaatgaaatccttaacatgt 274  Q
    |||||  |||| |||||||||    
T  38730217 ttaatagaatctttaacatgt 38730197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 40037615 - 40037507
Alignment:
Q  142 gcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnn--ttaatattagattttttaagcaataaattaacgcaatttctg 239  Q
    |||||||||||||||||||||||||||| ||||| ||| |||| |||||         ||||||||||||||||| ||||| |||||||| || ||||||    
T  40037615 gcacatgttaagcattaaattcttgccattaatgataagtatt-aattgaaaaaaaaattaatattagattttttgagcaa-aaattaactcagtttctg 40037518  T
Q  240 agacataattt 250  Q
    |||||||||||    
T  40037517 agacataattt 40037507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 9402859 - 9402904
Alignment:
Q  113 aatgagtcatgttaacttgtgcccttagggcacatgttaagcatta 158  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||    
T  9402859 aatgggtcatgttaacttctgcccttagggcacatgttaagcatta 9402904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 14055947 - 14055906
Alignment:
Q  114 atgagtcatgttaacttgtgcccttagggcacatgttaagca 155  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  14055947 atgagtcatgttaacttgtgccattagggcacatgttaagca 14055906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 26014840 - 26014881
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  26014840 gtcatgttaacttgtacccttagggcacatgttaagcattaa 26014881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 238
Target Start/End: Complemental strand, 3447545 - 3447428
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnnttaatattagattttttaag 217  Q
    ||||||||||||||||  ||||||||| |   ||| ||||||||||||| || ||||| |||||||| |||||       ||||||||||||||||| ||    
T  3447545 gtcatgttaacttgtggtcttagggcataa--taaacattaaattcttgtcattaatgataaatatt-aattgaaaaaaattaatattagattttttgag 3447449  T
Q  218 caataaattaacgcaatttct 238  Q
    ||||||||||||  |||||||    
T  3447448 caataaattaacataatttct 3447428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 31451416 - 31451376
Alignment:
Q  119 tcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  31451416 tcatgttaacttgtgctcttagggcacatgttaagcattaa 31451376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 38869937 - 38869877
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggta 178  Q
    |||||||||||||||||||||| |||||||||||| |||||| ||| | ||| ||||||||    
T  38869937 gtcatgttaacttgtgcccttaaggcacatgttaaacattaatttcattccattaatggta 38869877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 30069696 - 30069735
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcatt 157  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  30069696 gtcatgttaacttgtgctcttagggcacatgttaagcatt 30069735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 36660762 - 36660701
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaa 179  Q
    |||||||||||||||||||||| |||| ||||||| |||||| ||| | ||| |||||||||    
T  36660762 gtcatgttaacttgtgcccttaaggcatatgttaaccattaatttcgttccattaatggtaa 36660701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 11257857 - 11257889
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||||||||||||||||    
T  11257857 atgttaacttgtgcccttagggcacatgttaag 11257889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 7107435 - 7107474
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcatt 157  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  7107435 gtcatgctaacttgtgcccttatggcacatgttaagcatt 7107474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 8114297 - 8114332
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaag 153  Q
    |||||||||||||||||||| |||||||||||||||    
T  8114297 gtcatgttaacttgtgccctaagggcacatgttaag 8114332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 22489155 - 22489084
Alignment:
Q  113 aatgagtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatt 184  Q
    ||||||||||||||| ||||||| | | | |||||||||| |||||||||||  ||| |||| |||||||||    
T  22489155 aatgagtcatgttaatttgtgccataaagacacatgttaaacattaaattctcaccattaatagtaaatatt 22489084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 1042780 - 1042854
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacat 272  Q
    ||||||||| |  ||||||||||||||||||| ||||||   | ||||||||||||||| ||||||  |||||||    
T  1042780 ttaatattaaacattttaagcaataaattaacacaattttcaatacataatttctattagtgaaatttttaacat 1042854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 9399695 - 9399661
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaa 152  Q
    ||||||||||||||||||||||||||||| |||||    
T  9399695 gtcatgttaacttgtgcccttagggcacaagttaa 9399661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 36068484 - 36068414
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaat 188  Q
    |||||||||||||||||||| | | ||||||||||||||||  ||| | ||| |||||||||  |||||||    
T  36068484 gtcatgttaacttgtgccctcaagacacatgttaagcattattttcattccaataatggtaagaatttaat 36068414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 5895992 - 5896033
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||    
T  5895992 gtcattttaacttgtacccttagggcatatgttaagcattaa 5896033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 7107518 - 7107587
Alignment:
Q  211 ttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacata 280  Q
    |||| ||||||||||| || |||||||  | ||||||||||||||| || ||| ||||||||||| ||||    
T  7107518 ttttgagcaataaatttacacaatttccaatacataatttctattagtggaattcttaacatgtgccata 7107587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 40651789 - 40651748
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||| ||||| |||||| |||||||||||||||||||||||    
T  40651789 gtcatattaacgtgtgcctttagggcacatgttaagcattaa 40651748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 2539837 - 2539869
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||| |||||||||||||    
T  2539837 atgttaacttgtgcccttatggcacatgttaag 2539869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 8072435 - 8072474
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcatta 158  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  8072435 gtcatgttaattt-tgcccttagggcacatgttaagcatta 8072474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 30069875 - 30069843
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaag 153  Q
    ||||||||||||||||||| |||||||||||||    
T  30069875 atgttaacttgtgcccttaaggcacatgttaag 30069843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 129 - 304
Target Start/End: Complemental strand, 6847 - 6672
Alignment:
Q  129 ttgtgcccttagggcacatgttaagcattaaattcttgccactaatggtaaatatttaattgnnnnnnn-ttaatattagattttttaagcaataaatta 227  Q
    |||||||||||| ||||||||||||||||||||| ||  |||||||||||| |||| |||||        ||||||||| ||||||| ||||||||||||    
T  6847 ttgtgcccttagcgcacatgttaagcattaaatttttatcactaatggtaagtatt-aattgaaaaaaaattaatattatattttttgagcaataaatta 6749  T
Q  228 acgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttcctt 304  Q
    ||||||||||  ||| |||||||||||| ||| |||||||||||||||   || ||| |||| ||||||||| ||||    
T  6748 acgcaatttccaagatataatttctatttatggaatccttaacatgtgctctaaaggcacaagttaacatttccctt 6672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 21361 - 21519
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaa-gcattaaatt-cttgccactaatggtaaatatttaattgnnnnnnnttaatattagatttttta 215  Q
    |||||||| ||||||| |||||||| ||||||||| |||||||||| |||| || |||||||||||| |||| ||       |||||||||  ||||||     
T  21361 gtcatgtttacttgtgaccttagggtacatgttaaagcattaaatttcttgtcaataatggtaaata-ttaaatgaaaaaaattaatattaatttttttt 21459  T
Q  216 agcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    |||||||||||||| |||||   || ||||||| |||| || || || ||||||||||||    
T  21460 agcaataaattaacacaattatggatacataatctctaatagtggaaaccttaacatgtg 21519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 1494 - 1552
Alignment:
Q  211 ttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaa 269  Q
    |||| |||||||||||||| ||||||| || |||||||||||||||||| ||| |||||    
T  1494 ttttgagcaataaattaacacaatttccgatacataatttctattaatggaattcttaa 1552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 37627 - 37553
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacat 272  Q
    ||||||||| |  ||||||||||||||||||| |||||||| | |||| | |||||||| |||||| ||||||||    
T  37627 ttaatattaaacattttaagcaataaattaacacaatttctaatacatgacttctattagtgaaattcttaacat 37553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 9067 - 9129
Alignment:
Q  114 atgagtcatgttaacttgtgcccttagggcacatgttaagcattaaattcttgccactaatgg 176  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||| ||  | ||||||||||    
T  9067 atgactcatgttaacttgttcccttaggacacatgttaagcattaattttattccactaatgg 9129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 240565 - 240599
Alignment:
Q  121 atgttaacttgtgcccttagggcacatgttaagca 155  Q
    |||||||||||||||||||||||||||||||||||    
T  240565 atgttaacttgtgcccttagggcacatgttaagca 240599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 36406 - 36483
Alignment:
Q  198 ttaatattagattttttaagcaataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtg 275  Q
    ||||||||| || |||| || ||||||||||| |||||||  | ||||||||||||||| || ||| |||||||||||    
T  36406 ttaatattaaatattttgagaaataaattaacacaatttccaatacataatttctattagtggaattcttaacatgtg 36483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 260289 - 260330
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  260289 gtcatgttaacttgtgcccttagggtccatgttaagcattaa 260330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 21413 - 21372
Alignment:
Q  118 gtcatgttaacttgtgcccttagggcacatgttaagcattaa 159  Q
    ||||| |||||||||| | |||||||||||||||||||||||    
T  21413 gtcatattaacttgtgtctttagggcacatgttaagcattaa 21372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 21313 - 21229
Alignment:
Q  219 aataaattaacgcaatttctgagacataatttctattaatgaaatccttaacatgtgacatacaggtacaaattaacattttcct 303  Q
    ||||||||||| |||||||  | | ||||||| ||||| || ||| ||||||||||| | || ||| |||| |||||||||||||    
T  21313 aataaattaacacaatttccaatatataatttttattattggaattcttaacatgtgtcctaaaggcacaagttaacattttcct 21229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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