View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2711_high_19 (Length: 357)
Name: NF2711_high_19
Description: NF2711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2711_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 9241424 - 9241487
Alignment:
| Q |
20 |
gggacggtgtcttgaattaaattaaccaaacttagaggtaatcaagaaagcacgttaactccgt |
83 |
Q |
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| T |
9241424 |
gggacggtgtcttgaattaaattaaccaaacttagaggtaatcaagaaagcacgttaattccgt |
9241487 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 9225920 - 9225971
Alignment:
| Q |
20 |
gggacggtgtcttgaattaaattaaccaaacttagaggtaatcaagaaagca |
71 |
Q |
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| T |
9225920 |
gggacagtgtcttgaattaaattaaccaaacttaggggtaatcaagaaagca |
9225971 |
T |
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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 9241745 - 9241779
Alignment:
| Q |
296 |
atatggcaatctgataaacgttggattaaatatta |
330 |
Q |
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| T |
9241745 |
atatggcaatctgataaacgttggattaaatatta |
9241779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 344
Target Start/End: Original strand, 9241790 - 9241823
Alignment:
| Q |
311 |
aaacgttggattaaatattaaataatagtataat |
344 |
Q |
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| T |
9241790 |
aaacgttggattaaatattaaataatagtataat |
9241823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 9241904 - 9241957
Alignment:
| Q |
266 |
gaatggaacgctaaagttagaatagccctaatatggcaatctgataaacgttgg |
319 |
Q |
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| T |
9241904 |
gaatgtaatgctaaagttaaaatagccctaatatggcaaactaattaacgttgg |
9241957 |
T |
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